EWM27596.1, cds3093 (CDS) Nannochloropsis gaditana

Overview
NameEWM27596.1
Unique Namecds3093
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:716133..716171 +
Alignment locationCM002460.1:716310..717302 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27596.1
Productring u-box domain-containing protein
Orig transcript idgnl|cribi|Naga_100015g61.6412.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:716133..716171 +
CM002460.1supercontigCM002460.1:716310..717302 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|585109863|gb|EWM27596.1| (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 697.197 bits (1798), Expect = 0.000e+0
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query:    1 MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSFERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG 343
            MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSFERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG
Sbjct:    1 MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSFERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG 343          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|575485450|ref|XP_006682019.1| (hypothetical protein BATDEDRAFT_37445 [Batrachochytrium dendrobatidis JAM81] >gi|328767307|gb|EGF77357.1| hypothetical protein BATDEDRAFT_37445 [Batrachochytrium dendrobatidis JAM81])

HSP 1 Score: 75.8702 bits (185), Expect = 2.834e-12
Identity = 42/145 (28.97%), Postives = 67/145 (46.21%), Query Frame = 0
Query:  186 ASEDLI---DLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCID 327
            AS+D+I   D++  C+ S   +++     +      P    +  +D              C V   + H+ KA          +  P+K++   ++D  C IC++DY +GD+L  LPC H  H  CS  WLK+R  CPLC  CI+
Sbjct:   45 ASKDMIRQIDIVRYCSLSKNESSKDTLEDISVDIHKPVESISPSVDTD-----------ICKVNQSNNHIPKAKGTHGITQNKTNVPIKELYISNEDAHCAICIDDYKDGDQLHHLPCGHHLHFVCSKKWLKQRSRCPLCNCCIN 178          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|169599386|ref|XP_001793116.1| (hypothetical protein SNOG_02512 [Parastagonospora nodorum SN15] >gi|111069604|gb|EAT90724.1| hypothetical protein SNOG_02512 [Parastagonospora nodorum SN15])

HSP 1 Score: 77.0258 bits (188), Expect = 7.560e-12
Identity = 52/170 (30.59%), Postives = 70/170 (41.18%), Query Frame = 0
Query:  161 GELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCH-------VPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDW-LKRRKTCPLC 322
            G   +LGR R  R R L R          ++D +P   F  +  A+     L   + +  G +A+      G N      +T         VP       + G   A  V       K   SHD+++ C IC ED+ +G  LRVLPC H+FH EC   W L    TCPLC
Sbjct:  233 GPRNVLGRPRQSRARGLGRA---------ILDTIPIVKFGEKEPAKPTDVELASTAESSRGPEAAGAQTTTGANNVSTTPETAEPAEAMREVPTAPVEEQQEGIAPAQPVMTGAGASKDSSSHDENLGCSICTEDFEKGQDLRVLPCDHKFHPECVDPWLLNVSGTCPLC 393          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|298705934|emb|CBJ29064.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.8626 bits (172), Expect = 8.961e-11
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0
Query:  277 DDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLC 322
            DD ++CRICL DY  GD++R+LPCFHRFH     DWL R   CPLC
Sbjct:  120 DDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLC 165          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|947048362|gb|KRG97890.1| (hypothetical protein GLYMA_18G037200 [Glycine max])

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-10
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0
Query:  252 MLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEG 340
            M +A S   AE   ++  +  + + DDD++C +CLE    GD LR LPC H+FHA C   WL+++ TCP+C        R    WS+ G
Sbjct:  182 MQQASSSTPAEKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK------FRAGSGWSDNG 264          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|873234548|emb|CEM01892.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 73.1738 bits (178), Expect = 1.393e-10
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query:  264 PGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCID 327
            P   PP + ++S DD ++CRICL  +   + +R LPCFHRFH+ C++ WL++ K CP+C   ID
Sbjct:  582 PAHPPPSEDIES-DDRLTCRICLAPFENDELIRCLPCFHRFHSTCATSWLRQSKVCPICKMAID 644          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|947048365|gb|KRG97893.1| (hypothetical protein GLYMA_18G037200 [Glycine max])

HSP 1 Score: 69.707 bits (169), Expect = 1.833e-10
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0
Query:  254 KAGSIKAAEVPGSTPPLKKVDSH---------DDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEG 340
            + G     +   STP  KK D+          DDD++C +CLE    GD LR LPC H+FHA C   WL+++ TCP+C        R    WS+ G
Sbjct:  105 QCGGSSMQQASSSTPAEKKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK------FRAGSGWSDNG 194          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|955381736|ref|XP_014625693.1| (PREDICTED: uncharacterized protein LOC100777936 isoform X2 [Glycine max])

HSP 1 Score: 69.707 bits (169), Expect = 2.842e-10
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0
Query:  254 KAGSIKAAEVPGSTPPLKKVDSH---------DDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEG 340
            + G     +   STP  KK D+          DDD++C +CLE    GD LR LPC H+FHA C   WL+++ TCP+C        R    WS+ G
Sbjct:  127 QCGGSSMQQASSSTPAEKKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK------FRAGSGWSDNG 216          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|908476223|ref|XP_013090328.1| (PREDICTED: RING-H2 finger protein ATL2-like [Biomphalaria glabrata])

HSP 1 Score: 68.5514 bits (166), Expect = 2.845e-10
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query:  279 DVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCI 326
            DV C ICL+D+  GD+ R+LPC H FH EC+  WL+R  TCP+C   I
Sbjct:  118 DVRCSICLKDFETGDQKRILPCIHNFHTECADKWLRRNATCPVCRHLI 165          
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|908483751|ref|XP_013092878.1| (PREDICTED: NEP1-interacting protein 1-like [Biomphalaria glabrata])

HSP 1 Score: 68.5514 bits (166), Expect = 3.004e-10
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query:  279 DVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCI 326
            DV C ICL+D+  GD+ R+LPC H FH EC+  WL+R  TCP+C   I
Sbjct:  126 DVRCSICLKDFETGDQKRILPCIHNFHTECADKWLRRNATCPVCRHLI 173          
The following BLAST results are available for this feature:
BLAST of EWM27596.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109863|gb|EWM27596.1|0.000e+0100.00ring u-box domain-containing protein [Nannochlorop... [more]
gi|575485450|ref|XP_006682019.1|2.834e-1228.97hypothetical protein BATDEDRAFT_37445 [Batrachochy... [more]
gi|169599386|ref|XP_001793116.1|7.560e-1230.59hypothetical protein SNOG_02512 [Parastagonospora ... [more]
gi|298705934|emb|CBJ29064.1|8.961e-1160.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|947048362|gb|KRG97890.1|1.046e-1038.20hypothetical protein GLYMA_18G037200 [Glycine max][more]
gi|873234548|emb|CEM01892.1|1.393e-1045.31unnamed protein product [Vitrella brassicaformis C... [more]
gi|947048365|gb|KRG97893.1|1.833e-1037.50hypothetical protein GLYMA_18G037200 [Glycine max][more]
gi|955381736|ref|XP_014625693.1|2.842e-1037.50PREDICTED: uncharacterized protein LOC100777936 is... [more]
gi|908476223|ref|XP_013090328.1|2.845e-1054.17PREDICTED: RING-H2 finger protein ATL2-like [Biomp... [more]
gi|908483751|ref|XP_013092878.1|3.004e-1054.17PREDICTED: NEP1-interacting protein 1-like [Biomph... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3101rna3101Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications