rna3101, rna3101 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3101
Unique Name	rna3101
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1785
Alignment location	CM002460.1:715791..717729 +

Link to JBrowse

Properties


Property Name	Value
Product	ring u-box domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100015g61.6412.mrna
Orig protein id	gnl\|cribi\|Naga_100015g61.6412
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:715791..717729 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g61	gene2979	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3101	rna3101-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27596.1	cds3093	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:715791..717729+
coding sequence from alignment at CM002460.1:715791..717729+

mRNA sequence

>rna3101 ID=rna3101|Name=rna3101|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp
TGTGGCCATCCCCCCTTAGCTACGCCGTCGAGTCCATGTCTGAGGTACGG
ACTAAGGGGCCTTGCGCGGATGCATGGATGCGTCGCACGCCCCTTCTTTT
TCGTCGTCCAGCCCTGAAACCACTCAAGTTGTGATTCATCGCGATGTGTA
TCCATGTTGCATTTTATTATATCTCACTCTACCGGCGTGCTACCACGCTC
CTTTACCCTCAACCAAAGGGATCATTGCAGGAGGCAGGAGGCTAGAGGGC
GTACAAGGTGACGACAAAACATCCACCAACACTGCACGCAATTTGAGCGC
CACCACGAAGATGATCGTGATAACAGAAAAGGAACTTACCCTTCTTGCGG
GTGCGGGCGGTCTGGCATTGTACGCGGGGAAGCAAGGGCCAAAGTGCCCC
TTCCACCGCATGCTGTTTGCGGCCTCCAACCTGGTGCTGCTGGGCGGGGG
AGTCTACGTTTTGTGGCGTTCCTGGTCGCAGTCTCCACCGGCATTTTGGT
GCTCTTTGCAAACAGTCCGGAAGAAGAGCAGAGAGCGGCTACGCGGGGGA
AAAAAGGCTCGGGGAGAGGATGCAAAGCATCAGGACGCCCGGGTGGCGGC
AGTTCTCGACTTGGTGCGACCTAACATTTGGGAACTAGAGCCGTATCGAT
GCGCGCGGGACGACTACAGCGAAGGAATTTTGCTGGACGCGAACGAGAAC
TCGTTTGGATCGGCCCTGCCGCCCGAAGACCGTGTCTTGGAATTGGAGCG
GTATCCTGACCCCTACCAGCAGCCTTTGAAAGAGAAGATAGCGGTGTTTC
GAAACGTCCGTCCGGAGCAAATTTTCGTCGGGGTGGGGAGCGACGAGGCC
ATCGACTTGATCATGCGCGTTTTTTGTGAGCCCGGGAGGGATCAGATTCT
CGTCACCCCCCCCACGTACGGCATGTACAAGGTGTCCGCCAAAACCAACG
ACGTGGGCATCGTCGCCGTGCCCCTGACGCCGGAATTTGCCGTCCGGGTG
CCCGAGGTCCTTCAGGCGGTCGCTGTCTCTCCGCGCGTCAAGGTCATTTT
CCTCTGCTCGCCGGGCAATCCAACAGCCAAGCTCGTGCCCTTAGAGGTGG
TGGAGCAAGTGCTGCAAGGCGCCTCGGGCTGCATGGTGGTCGTGGATGAG
GCCTACGTTGATTTTGCGAACGCGAATGCGGTGAGTGCCTGTCAACTTGT
GGAGAAATACCCGAACTGCCTCGTCCTGCAGACCCTTTCCAAGGCCTTCG
GTCTGGCAGGCATCCGGTGCGGCATGGCCATAGGACACCCGGCGGTCATT
CAGGTTCTGAACAATGTCAAGGCGCCTTACAACGTGAGCCAGCTCACCTC
CCACATGGCCCACAAGGTTTTCACTGCTGAGAACCTGGCGGTGCTCCAGC
AGAACGTGAGTGACATACTAAAGGAGAAAACGCGGGTGGTGGAGGCCCTG
CAAGGCCTGCCTGCAGTGAAGAAGATCCATCCTTCGGATACAAATTTTAT
TCTCTTTGAAGTGCCGCGGGCTCAGGAAATCTATCGAGACATGGCTGAGG
CAGGGGTCGTTGCGCGGTTTCGGGGCCACGAATTGCATTGCAAGGATTGC
ATTCGTCTGACCATCGGCCAGGCCCACGAGAACGACACATTTTTGGACCT
TTTCAAGAAAACCACAGAGAAATACCTTGGCAAGTACACATAAGAGTGAG
TAGTGCGACGGGTCATCTACTAAACAAGAGGACACTTGAGACACGTACCC
CACCAATTGCAGCCCGACCAGTAGGGCCTTCTTGC

protein sequence of rna3101

>rna3101-protein ID=rna3101-protein|Name=rna3101|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQS
TSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSF
ERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPL
NDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFS
AEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDF
HMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPC
FHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG

mRNA from alignment at CM002460.1:715791..717729+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3101 ID=rna3101|Name=rna3101|organism=Nannochloropsis gaditana|type=mRNA|length=1939bp|location=Sequence derived from alignment at CM002460.1:715791..717729+ (Nannochloropsis gaditana)
GATGCGATTCAGCCTGGATAACGTGAAGGGAGCCGAGAAGAAATGCAACA
GATCGAGTTGAAAGCACGCCCATCGTGCGCCTAATTGAAAGCCACAGGCA
ATCACACGTAGACTGTGAGCGGCAGTTTTTGGGTTTCATGCTGACGTGAC
CACGTTATGTTTGCATGGGTATACACGTGTGTTGTCATGTCCTTCATAGG
GAGCGAATGATTTTTGCGATTACTGGGCTGTTGCCTTGCCTTCATAGGGG
ACTCCCCGGAGGAGCGGCAAGAAGCGTCATCTTTCCGTCAACTCTTCCCC
ACTGATGCCCCCTGCACAGGCGTTTCTGTCGTAGCTGAAATCATGGGCAA
CCGAAACACATATCCTGCAGAGCACCACAGTGTAAGTCACGGGGGGGTGA
TCTCTGGGCGAAGAGATATTCAATAAAAGGGTGGTTAGAAggagcttcct
ccccctgatGCCAGCGTGtgactccctcctcaccctgtACAATATTGTCC
ATTGAAACATTTTGAATAGTCGACAAGGAGCACAAGGTCTGCTTCACCAT
CATCTACGGCAGCTGAATCGCAGGGCAGCGGCAGGAGAAGTAGTGGGGAA
CGGCCAAATGGCAATTTTTTATACCAATCTACCAGCGCGGCGGGCACCTC
TTCTCCGTCGCATCAAACAATGTGCCCTCAATGTCAACGAGTACTCCTAA
TCCCACCAAATGCGCCCTTGTTTCGGTGTCCTTGCGGCGTTTTGTTCAGG
ACAGAGACATTGGATCCCCATCGGAGCTTCGAACGACCTACGAGTGGCCT
TCTGGGAGCTACCGGTTTGATGGGCCGCTCTGTTATTTGCCGACGCTGCC
GTCGACTTTCGATGCTACCGCAAGATGGTTCCAGTGATGGCATTGCTATA
TGTCCATGCGGCTCTCCAGCTTTGCCGCTGAATGACATGGTCATGTCCTT
GCTGGCCGAGGGTGAACTGGGCTTGTTGGGACGTGGGCGACACGGGCGCC
GGAGGGCTTTATTTCGGCAAGGAGACGTGGAAGGAGCCTCAGAGGACTTG
ATAGACTTGCTACCGACCTGCACGTTTTCGGCAGAGGCAGCGGCGCGGGC
AGCGACTGCCCGCTTGGGGGGGAAATCTCCGGCGCCCTCCGGGGTCCAGG
CTTCTgtgctggacgagggagcggggaagaATTGTtgcggggagaggaaa
aagacatgTCACGTACCGCCCGAGGATTTCCATATGCTCAAAGCAGGATC
GATCAAAGCGGCAGAGGTGCCCGGGTCCACGCCTCCTTTGAAAAAGGTAG
ATTCGCATGACGATGACGTTTCGTGTCGCATATGTTTGGAAGACTACGCC
GAGGGAGACCGGTTGCGGGttctcccctgcttccaccGATTTCACGCGGA
GTGCTCTTCCGACTGGTTGAAGCGGAGAAAGACGTGTCCCTTGTGCACAA
CCTGCATTGATGTGATCATGCGGCGGCCGGAGGACtggagcgaggaaggc
gtcTCCGGATGAGGGCCTAGAGTTTCGGCCCCATAGAGGACCATGATGGG
GATCGACGTTGTTTTATGCTGTTGAAGCGAAGAATAGTGTAAAAAAGCGA
TGACCGGACAGTAATGTAAATAGATGGATCTCTCCCCGTCTGCCCCGATT
TTCTATAGAGGGAAATCAGGCATTATCGGCTTTAAGACTTGCACGACATG
TGATAATAATAGAAAGAAGACGGCCTTTTCATCGCAAGAACATGGGAATC
TCCAGTCGAGGGCATCAGGCGCTACTTTTGTTTCGACTACTTTGCGGGAG
TCCTGGTCTTGCCGCACAGTACACGCATGCTTTCGGGTCATTTTCTGCAA
AAGACGACAACGTCATCGTCTATCCCGTTGTCATCGATGACCCaatttct
tctcctgcctttACACATGATCACTTTTCCACTACCCCA

Coding sequence (CDS) from alignment at CM002460.1:715791..717729+

>rna3101 ID=rna3101|Name=rna3101|organism=Nannochloropsis gaditana|type=CDS|length=2064bp|location=Sequence derived from alignment at CM002460.1:715791..717729+ (Nannochloropsis gaditana)
ATGGGCAACCGAAACACATATCCTGCAGAGCACCACAGTTCGACAAGGAG
CACAAGGTCTGCTTCACCATCATCTACGGCAGCTGAATCGCAGGGCAGCG
GCAGGAGAAGTAGTGGGGAACGGCCAAATGGCAATTTTTTATACCAATCT
ACCAGCGCGGCGGGCACCTCTTCTCCGTCGCATCAAACAATGTGCCCTCA
ATGTCAACGAGTACTCCTAATCCCACCAAATGCGCCCTTGTTTCGGTGTC
CTTGCGGCGTTTTGTTCAGGACAGAGACATTGGATCCCCATCGGAGCTTC
GAACGACCTACGAGTGGCCTTCTGGGAGCTACCGGTTTGATGGGCCGCTC
TGTTATTTGCCGACGCTGCCGTCGACTTTCGATGCTACCGCAAGATGGTT
CCAGTGATGGCATTGCTATATGTCCATGCGGCTCTCCAGCTTTGCCGCTG
AATGACATGGTCATGTCCTTGCTGGCCGAGGGTGAACTGGGCTTGTTGGG
ACGTGGGCGACACGGGCGCCGGAGGGCTTTATTTCGGCAAGGAGACGTGG
AAGGAGCCTCAGAGGACTTGATAGACTTGCTACCGACCTGCACGTTTTCG
GCAGAGGCAGCGGCGCGGGCAGCGACTGCCCGCTTGGGGGGGAAATCTCC
GGCGCCCTCCGGGGTCCAGGCTTCTgtgctggacgagggagcggggaaga
ATTGTtgcggggagaggaaaaagacatgTCACGTACCGCCCGAGGATTTC
CATATGCTCAAAGCAGGATCGATCAAAGCGGCAGAGGTGCCCGGGTCCAC
GCCTCCTTTGAAAAAGGTAGATTCGCATGACGATGACGTTTCGTGTCGCA
TATGTTTGGAAGACTACGCCGAGGGAGACCGGTTGCGGGttctcccctgc
ttccaccGATTTCACGCGGAGTGCTCTTCCGACTGGTTGAAGCGGAGAAA
GACGTGTCCCTTGTGCACAACCTGCATTGATGTGATCATGCGGCGGCCGG
AGGACtggagcgaggaaggcgtcTCCGGATGAATGGGCAACCGAAACACA
TATCCTGCAGAGCACCACAGTTCGACAAGGAGCACAAGGTCTGCTTCACC
ATCATCTACGGCAGCTGAATCGCAGGGCAGCGGCAGGAGAAGTAGTGGGG
AACGGCCAAATGGCAATTTTTTATACCAATCTACCAGCGCGGCGGGCACC
TCTTCTCCGTCGCATCAAACAATGTGCCCTCAATGTCAACGAGTACTCCT
AATCCCACCAAATGCGCCCTTGTTTCGGTGTCCTTGCGGCGTTTTGTTCA
GGACAGAGACATTGGATCCCCATCGGAGCTTCGAACGACCTACGAGTGGC
CTTCTGGGAGCTACCGGTTTGATGGGCCGCTCTGTTATTTGCCGACGCTG
CCGTCGACTTTCGATGCTACCGCAAGATGGTTCCAGTGATGGCATTGCTA
TATGTCCATGCGGCTCTCCAGCTTTGCCGCTGAATGACATGGTCATGTCC
TTGCTGGCCGAGGGTGAACTGGGCTTGTTGGGACGTGGGCGACACGGGCG
CCGGAGGGCTTTATTTCGGCAAGGAGACGTGGAAGGAGCCTCAGAGGACT
TGATAGACTTGCTACCGACCTGCACGTTTTCGGCAGAGGCAGCGGCGCGG
GCAGCGACTGCCCGCTTGGGGGGGAAATCTCCGGCGCCCTCCGGGGTCCA
GGCTTCTgtgctggacgagggagcggggaagaATTGTtgcggggagagga
aaaagacatgTCACGTACCGCCCGAGGATTTCCATATGCTCAAAGCAGGA
TCGATCAAAGCGGCAGAGGTGCCCGGGTCCACGCCTCCTTTGAAAAAGGT
AGATTCGCATGACGATGACGTTTCGTGTCGCATATGTTTGGAAGACTACG
CCGAGGGAGACCGGTTGCGGGttctcccctgcttccaccGATTTCACGCG
GAGTGCTCTTCCGACTGGTTGAAGCGGAGAAAGACGTGTCCCTTGTGCAC
AACCTGCATTGATGTGATCATGCGGCGGCCGGAGGACtggagcgaggaag
gcgtcTCCGGATGA

Synonyms

Publications