EWM27596.1, cds3093 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|585109863|gb|EWM27596.1| (ring u-box domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 697.197 bits (1798), Expect = 0.000e+0 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query: 1 MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSFERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG 343
MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSFERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG
Sbjct: 1 MGNRNTYPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRSFERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG 343
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|575485450|ref|XP_006682019.1| (hypothetical protein BATDEDRAFT_37445 [Batrachochytrium dendrobatidis JAM81] >gi|328767307|gb|EGF77357.1| hypothetical protein BATDEDRAFT_37445 [Batrachochytrium dendrobatidis JAM81]) HSP 1 Score: 75.8702 bits (185), Expect = 2.834e-12 Identity = 42/145 (28.97%), Postives = 67/145 (46.21%), Query Frame = 0
Query: 186 ASEDLI---DLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCID 327
AS+D+I D++ C+ S +++ + P + +D C V + H+ KA + P+K++ ++D C IC++DY +GD+L LPC H H CS WLK+R CPLC CI+
Sbjct: 45 ASKDMIRQIDIVRYCSLSKNESSKDTLEDISVDIHKPVESISPSVDTD-----------ICKVNQSNNHIPKAKGTHGITQNKTNVPIKELYISNEDAHCAICIDDYKDGDQLHHLPCGHHLHFVCSKKWLKQRSRCPLCNCCIN 178
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|169599386|ref|XP_001793116.1| (hypothetical protein SNOG_02512 [Parastagonospora nodorum SN15] >gi|111069604|gb|EAT90724.1| hypothetical protein SNOG_02512 [Parastagonospora nodorum SN15]) HSP 1 Score: 77.0258 bits (188), Expect = 7.560e-12 Identity = 52/170 (30.59%), Postives = 70/170 (41.18%), Query Frame = 0
Query: 161 GELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQASVLDEGAGKNCCGERKKTCH-------VPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDW-LKRRKTCPLC 322
G +LGR R R R L R ++D +P F + A+ L + + G +A+ G N +T VP + G A V K SHD+++ C IC ED+ +G LRVLPC H+FH EC W L TCPLC
Sbjct: 233 GPRNVLGRPRQSRARGLGRA---------ILDTIPIVKFGEKEPAKPTDVELASTAESSRGPEAAGAQTTTGANNVSTTPETAEPAEAMREVPTAPVEEQQEGIAPAQPVMTGAGASKDSSSHDENLGCSICTEDFEKGQDLRVLPCDHKFHPECVDPWLLNVSGTCPLC 393
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|298705934|emb|CBJ29064.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 70.8626 bits (172), Expect = 8.961e-11 Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0
Query: 277 DDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLC 322
DD ++CRICL DY GD++R+LPCFHRFH DWL R CPLC
Sbjct: 120 DDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLC 165
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|947048362|gb|KRG97890.1| (hypothetical protein GLYMA_18G037200 [Glycine max]) HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-10 Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0
Query: 252 MLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEG 340
M +A S AE ++ + + + DDD++C +CLE GD LR LPC H+FHA C WL+++ TCP+C R WS+ G
Sbjct: 182 MQQASSSTPAEKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK------FRAGSGWSDNG 264
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|873234548|emb|CEM01892.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 73.1738 bits (178), Expect = 1.393e-10 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 264 PGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCID 327
P PP + ++S DD ++CRICL + + +R LPCFHRFH+ C++ WL++ K CP+C ID
Sbjct: 582 PAHPPPSEDIES-DDRLTCRICLAPFENDELIRCLPCFHRFHSTCATSWLRQSKVCPICKMAID 644
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|947048365|gb|KRG97893.1| (hypothetical protein GLYMA_18G037200 [Glycine max]) HSP 1 Score: 69.707 bits (169), Expect = 1.833e-10 Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0
Query: 254 KAGSIKAAEVPGSTPPLKKVDSH---------DDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEG 340
+ G + STP KK D+ DDD++C +CLE GD LR LPC H+FHA C WL+++ TCP+C R WS+ G
Sbjct: 105 QCGGSSMQQASSSTPAEKKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK------FRAGSGWSDNG 194
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|955381736|ref|XP_014625693.1| (PREDICTED: uncharacterized protein LOC100777936 isoform X2 [Glycine max]) HSP 1 Score: 69.707 bits (169), Expect = 2.842e-10 Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0
Query: 254 KAGSIKAAEVPGSTPPLKKVDSH---------DDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEG 340
+ G + STP KK D+ DDD++C +CLE GD LR LPC H+FHA C WL+++ TCP+C R WS+ G
Sbjct: 127 QCGGSSMQQASSSTPAEKKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK------FRAGSGWSDNG 216
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|908476223|ref|XP_013090328.1| (PREDICTED: RING-H2 finger protein ATL2-like [Biomphalaria glabrata]) HSP 1 Score: 68.5514 bits (166), Expect = 2.845e-10 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query: 279 DVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCI 326
DV C ICL+D+ GD+ R+LPC H FH EC+ WL+R TCP+C I
Sbjct: 118 DVRCSICLKDFETGDQKRILPCIHNFHTECADKWLRRNATCPVCRHLI 165
BLAST of EWM27596.1 vs. NCBI_GenBank
Match: gi|908483751|ref|XP_013092878.1| (PREDICTED: NEP1-interacting protein 1-like [Biomphalaria glabrata]) HSP 1 Score: 68.5514 bits (166), Expect = 3.004e-10 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query: 279 DVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCI 326
DV C ICL+D+ GD+ R+LPC H FH EC+ WL+R TCP+C I
Sbjct: 126 DVRCSICLKDFETGDQKRILPCIHNFHTECADKWLRRNATCPVCRHLI 173 The following BLAST results are available for this feature:
BLAST of EWM27596.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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