EWM27561.1, cds3087 (CDS) Nannochloropsis gaditana

Overview
NameEWM27561.1
Unique Namecds3087
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:701784..703871 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27561.1
ProductExtracellular ligand-binding receptor
Orig transcript idgnl|cribi|Naga_100015g68.6377.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:701784..703871 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR028082Peripla_BP_I
IPR001828ANF_lig-bd_rcpt
Homology
[Close]
BLAST of EWM27561.1 vs. NCBI_GenBank
Match: gi|585109828|gb|EWM27561.1| (Extracellular ligand-binding receptor [Nannochloropsis gaditana])

HSP 1 Score: 1414.82 bits (3661), Expect = 0.000e+0
Identity = 695/695 (100.00%), Postives = 695/695 (100.00%), Query Frame = 0 
Query:    1 MTRAVILIPSALACRQHSPYRRAIEAALIAQFKSSSGANTLTWQWREPVYQTTCVSAYDDRPGCNGGPGGFANGMKMGSLQAQAQALLKSDPDLDFVLIPGLEAPYQARYLTRVFRTGMDDSSTDGKGQKMKRAAPSASAGVSSIIHVTTLRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGIHIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRATHQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELALLEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGSDSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPSPASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASGGKLASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPHGIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRAHPRDLVEGWGTQGEGPDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKRKELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLRSVEVDMKDVVMKRRGGGHRPGILLYCVQGILPELARGDQGVATGG 695
            MTRAVILIPSALACRQHSPYRRAIEAALIAQFKSSSGANTLTWQWREPVYQTTCVSAYDDRPGCNGGPGGFANGMKMGSLQAQAQALLKSDPDLDFVLIPGLEAPYQARYLTRVFRTGMDDSSTDGKGQKMKRAAPSASAGVSSIIHVTTLRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGIHIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRATHQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELALLEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGSDSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPSPASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASGGKLASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPHGIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRAHPRDLVEGWGTQGEGPDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKRKELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLRSVEVDMKDVVMKRRGGGHRPGILLYCVQGILPELARGDQGVATGG
Sbjct:    1 MTRAVILIPSALACRQHSPYRRAIEAALIAQFKSSSGANTLTWQWREPVYQTTCVSAYDDRPGCNGGPGGFANGMKMGSLQAQAQALLKSDPDLDFVLIPGLEAPYQARYLTRVFRTGMDDSSTDGKGQKMKRAAPSASAGVSSIIHVTTLRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGIHIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRATHQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELALLEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGSDSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPSPASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASGGKLASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPHGIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRAHPRDLVEGWGTQGEGPDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKRKELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLRSVEVDMKDVVMKRRGGGHRPGILLYCVQGILPELARGDQGVATGG 695
[Close]
BLAST of EWM27561.1 vs. NCBI_GenBank
Match: gi|553183847|ref|XP_005853979.1| (deah (asp-glu-ala-his) box polypeptide 36 [Nannochloropsis gaditana CCMP526] >gi|422295081|gb|EKU22380.1| deah (asp-glu-ala-his) box polypeptide 36 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1194.1 bits (3088), Expect = 0.000e+0
Identity = 588/591 (99.49%), Postives = 589/591 (99.66%), Query Frame = 0 
Query:   77 MGSLQAQAQALLKSDPDLDFVLIPGLEAPYQARYLTRVFRTGMDDSSTDGKGQKMKRAAPSASAGVSSIIHVTTLRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGIHIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRATHQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELALLEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGSDSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPSPASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASGGKLASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPHGIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRAHPRDLVEGWGTQGEGPDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKRKELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLRSVEVDMKDVVMKRRGGG 667
            MGSLQAQAQALLKSDPDLDFVLIPGLEAPYQARYLTRVFRTGMDDSSTDGKG+KMKRAAPSASAGVSSIIHVTTLRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGIHIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRATHQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELALLEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGSDSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPSPASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASGGK ASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPHGIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRA PRDLVEGWGTQGEGPDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKRKELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLRSVEVDMKDVVMKRRGGG
Sbjct:    1 MGSLQAQAQALLKSDPDLDFVLIPGLEAPYQARYLTRVFRTGMDDSSTDGKGKKMKRAAPSASAGVSSIIHVTTLRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGIHIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRATHQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELALLEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGSDSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPSPASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASGGKPASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPHGIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRAQPRDLVEGWGTQGEGPDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKRKELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLRSVEVDMKDVVMKRRGGG 591
The following BLAST results are available for this feature:
BLAST of EWM27561.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109828|gb|EWM27561.1|0.000e+0100.00Extracellular ligand-binding receptor [Nannochloro... [more]
gi|553183847|ref|XP_005853979.1|0.000e+099.49deah (asp-glu-ala-his) box polypeptide 36 [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3095rna3095Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications