rna3095, rna3095 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3095
Unique Name	rna3095
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1068
Alignment location	CM002460.1:701784..703871 -

Link to JBrowse

Properties


Property Name	Value
Product	Extracellular ligand-binding receptor
Orig transcript id	gnl\|cribi\|Naga_100015g68.6377.mrna
Orig protein id	gnl\|cribi\|Naga_100015g68.6377
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:701784..703871 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g68	gene2973	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27561.1	cds3087	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3095	rna3095-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:701784..703871-
coding sequence from alignment at CM002460.1:701784..703871-

mRNA sequence

>rna3095 ID=rna3095|Name=rna3095|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp
ATGCTGCACAAAGATCTGCGGCACCCCAATGTGGTCATGTTCCGGGGAGC
GTCGTGGCGAGACGGGCGGTTGCTGATGCTGATCGATTACGCGGGTCGTG
GGACATTGGCGGACGTGCTGCGACGTTCTAAAGGCACTTTGAGGTGGAAA
CCTGTCAAGCTTAACATGGCCCTCGGGATTGCCAAGGGCATGGCATTCTT
GCACCAGACGCGGTATTACGACATGTGGACGTCGTCCTATCAACGCTGTG
TGGTTCATCGGGATCTGAAGCCTCAGAACATACTTGTCACAGACTCTTAC
CACGTCCAGATTACCGACTTCGGAGAGGCCCGCACCGTCGACCACGAGAA
CACCATGACCCAAGTGGGCACACAGCTTTTTGTGGCTCCGGAGGTGGTCC
GGGGCGAGCGCTATTCCGAGAAATGCGACGTCTACTCCTTTGCGGTCGTC
CTCCTTGCCATGCTCGAGCTTCGGCCGGATGTCTTGGACGTTTTTGCGGA
GTCTTTGCCAGAGGTAGAGCGAAGCGAAACGGGAATTACGAAGGAGCGAC
TGAAGGAACCGGAAGGTGTGGAGGTCACGGACGCTTGTAAAACCTGCCCG
CTCAACAAGGCCAATCAGCCACCGCCCGGGGTATCCTTGGCGCAGGCTCA
GGCGGCGGCCTCCACGCCCGAACACGAATGCCCTCTGGCGCAGCATAAGG
AGTTCAAGGGGGTAGTGGCTCATGCCGTGACACGTGCAATTGTCTATGAT
GACTTCCGACCCCCTATTAAAGGTTGCCCGTATCAGGGTTTAAAAACACT
GATAGAAAAGTGCTGGATTCCCGATGTCAACGACCGTCCTGGTTTCGCGG
CAGTCGTCGAGGCTTTGGACGGGCGCGTCCGCCGGGAAGTAAGCGACTAC
GTCCGCCCTAATGGCGGCAGCACTAGCAGCCATTCAACGGGCTCTACCTC
TTGCTTTACTTCTGGGAGTATAGATCTCATGATGGTCCGAGACGGGTCTC
GGCAAGGATTTCGCGTGGCAAGTGGGGATGTAGCACGTTTACGTGCTCCA
CATGGCACAAATACATGA

protein sequence of rna3095

>rna3095-protein ID=rna3095-protein|Name=rna3095|organism=Nannochloropsis gaditana|type=polypeptide|length=695bp
MTRAVILIPSALACRQHSPYRRAIEAALIAQFKSSSGANTLTWQWREPVY
QTTCVSAYDDRPGCNGGPGGFANGMKMGSLQAQAQALLKSDPDLDFVLIP
GLEAPYQARYLTRVFRTGMDDSSTDGKGQKMKRAAPSASAGVSSIIHVTT
LRLAPAERTYATAAALCRHFGWSNVVLLSSDDDRMQSAQGLRQQLTAAGI
HIRRHQIFSPSHTYQGAASSASSSSILSHDLDAIRTSGTRIVFLLSSCRA
THQVLSAARQKKMLRDYAWVVLHPNSACALDDAPSGFHDADVSEEGELAL
LEMYQGVLGLVWDGATAANGAAWSSTGKTSNSSDISSQAAGALSDFCRGS
DSHAYDASGPLSEREPAGAPADVLDLSPRFLFETMRHLASLSSTPSANPS
PASSSHPVGEVMRDTVGGSDMDGDVVLHPDLAVSVLSFSGARRASWEASG
GKLASNDTHGVSESASRGKRRRGSNSTANKDPVRIEVIHQPIARLALSPH
GIDPSSSAPADPLDSLGRLELLTARPLRWPGDVRAHPRDLVEGWGTQGEG
PDFLFSPTAGRDMQGLVHGLGLWSVIFGMAAMCIALTPLWNWVYKRLFKR
KELSPPCLDGGCAPIPAISEVKDAASQEEDRAFIATRMAELTEKQAELLR
SVEVDMKDVVMKRRGGGHRPGILLYCVQGILPELARGDQGVATGG

mRNA from alignment at CM002460.1:701784..703871-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3095 ID=rna3095|Name=rna3095|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp|location=Sequence derived from alignment at CM002460.1:701784..703871- (Nannochloropsis gaditana)
ATGACACGAGCGGTTATATTGATACCGTCGGCCCTTGCGTGTCGACAGCA
CTCACCGTACCGACGAGCGATAGAAGCGGCCTTGATAGCACAGTTCAAGT
CGAGTAGTGGCGCCAACACGCTTACATGGCAGTGGCGAGAACCAGTTTAT
CAAACAACTTGTGTATCTGCTTATGACGATCGACCAGGCTGCAATGGTGG
TCCGGGAGGCTTTGCCAATGGTATGAAGATGGGCAGCCTGCAGGCCCAGG
CCCAAGCCTTGCTGAAGTCGGACCCCGACCTTGATTTCGTCTTGATTCCT
GGATTAGAGGCCCCATATCAAGCCAGGTATCTGACGCGGGTTTTCCGCAC
GGGAATGGATGATTCCAGCACCGACGGGAAGGGCCAAAAAATGAAGCGAG
CTGCGCCCTCCGCCTCGGCCGGCGTTTCCTCGATCATTCACGTCACGACC
CTACGCCTCGCCCCCGCGGAGCGCACCTATGCAACGGCAGCCGCACTTTG
CCGACACTTTGGCTGGAGCAATGTGGTACTCTTGAGCTCGGATGATGATC
GCATGCAATCTGCGCAGGGATTACGTCAACAGTTGACCGCCGCAGGCATC
CATATCCGCCGTCATCAAATATTTTCTCCTTCCCACACCTACCAAGGTGC
AGCAAGCTCCGCCTCCTCCTCATCCATCCTTTCACATGATCTAGATGCAA
TCCGCACTAGTGGAACTCGTATAGTCTTCCTCCTTTCCTCCTGTCGAGCC
ACTCACCAGGTTCTGAGCGCGGCGCGACAAAAGAAGATGCTAAGGGATTA
CGCCTGGGTAGTCCTGCATCCGAATTCTGCGTGCGCCTTGGATGACGCGC
CAAGCGGTTTTCACGATGCAGATGTCTCGGAGGAAGGGGAGTTGGCGCTC
TTGGAGATGTACCAAGGTGTGTTGGGCCTGGTCTGGGACGGCGCGACGGC
CGCGAACGGCGCGGCGTGGTCCTCCACCGGCAAGACAAGCAATTCGTCGG
ACATTTCCTCGCAGGCTGCCGGTGCTCTGAGCGACTTTTGTAGAGGCAGC
GATAGCCACGCATACGACGCCAGTGGCCCTCTAAGCGAGCGGGAGCCGGC
GGGTGCCCCGGCGGATGTGCTGGACCTGTCCCCTCGCTTCCTCTTCGAGA
CCATGCGACACTTGGCATCTCTTTCCTCCACGCCCTCGGCCAATCCCTCC
CCTGCGTCTTCGTCCCATCCTGTTGGTGAGGTCATGCGTGACACGGTGGG
GGGCAGTGACATGGACGGAGACGTGGTGCTGCACCCGGACCTAGCCGTAT
CGGTTTTGAGCTTCTCGGGCGCGCGGCGGGCGTCATGGGAGGCCTCAGGG
GGTAAACTTGCCTCCAACGACACTCACGGTGTGAGTGAGAGCGCGAGCCG
GGGTAAAAGACGTCGGGGGAGCAACAGCACCGCCAACAAGGACCCGGTAC
GGATTGAGGTCATCCATCAGCCTATCGCCCGCTTGGCTCTATCCCCCCAT
GGCATCGATCCGTCATCCTCCGCCCCTGCAGATCCCTTGGACAGTCTGGG
ACGCCTGGAGCTTTTGACGGCACGGCCCCTCCGGTGGCCTGGGGATGTGC
GAGCGCATCCGCGAGACCTGGTGGAGGGGTGGGGTACGCAAGGGGAGGGG
CCCGACTTCCTCTTCTCTCCCACGGCGGGGCGGGACATGCAGGGCCTGGT
CCATGGCCTTGGGCTCTGGTCGGTGATTTTTGGGATGGCCGCGATGTGCA
TTGCCCTGACGCCCTTGTGGAACTGGGTGTACAAGCGCCTGTTCAAGCGC
AAAGAGCTGTCTCCTCCCTGTCTGGACGGGGGCTGCGCACCCATCCCTGC
CATCAGCGAGGTGAAGGACGCGGCCAGCCAGGAGGAAGACCGCGCCTTCA
TTGCCACACGCATGGCGGAGCTCACCGAAAAGCAAGCGGAGCTCCTTCGA
TCCGTGGAGGTGGACATGAAAGACGTGGTAATGAAGCGGCGCGGGGGGGG
GCATCGGCCAGGGATCCTTCTCTATTGTGTACAAGGGATACTACCAGAAC
TCGCACGTGGCGATCAAGGTGTTGCGACGGGTGGATGA

Coding sequence (CDS) from alignment at CM002460.1:701784..703871-

>rna3095 ID=rna3095|Name=rna3095|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002460.1:701784..703871- (Nannochloropsis gaditana)
ATGACACGAGCGGTTATATTGATACCGTCGGCCCTTGCGTGTCGACAGCA
CTCACCGTACCGACGAGCGATAGAAGCGGCCTTGATAGCACAGTTCAAGT
CGAGTAGTGGCGCCAACACGCTTACATGGCAGTGGCGAGAACCAGTTTAT
CAAACAACTTGTGTATCTGCTTATGACGATCGACCAGGCTGCAATGGTGG
TCCGGGAGGCTTTGCCAATGGTATGAAGATGGGCAGCCTGCAGGCCCAGG
CCCAAGCCTTGCTGAAGTCGGACCCCGACCTTGATTTCGTCTTGATTCCT
GGATTAGAGGCCCCATATCAAGCCAGGTATCTGACGCGGGTTTTCCGCAC
GGGAATGGATGATTCCAGCACCGACGGGAAGGGCCAAAAAATGAAGCGAG
CTGCGCCCTCCGCCTCGGCCGGCGTTTCCTCGATCATTCACGTCACGACC
CTACGCCTCGCCCCCGCGGAGCGCACCTATGCAACGGCAGCCGCACTTTG
CCGACACTTTGGCTGGAGCAATGTGGTACTCTTGAGCTCGGATGATGATC
GCATGCAATCTGCGCAGGGATTACGTCAACAGTTGACCGCCGCAGGCATC
CATATCCGCCGTCATCAAATATTTTCTCCTTCCCACACCTACCAAGGTGC
AGCAAGCTCCGCCTCCTCCTCATCCATCCTTTCACATGATCTAGATGCAA
TCCGCACTAGTGGAACTCGTATAGTCTTCCTCCTTTCCTCCTGTCGAGCC
ACTCACCAGGTTCTGAGCGCGGCGCGACAAAAGAAGATGCTAAGGGATTA
CGCCTGGGTAGTCCTGCATCCGAATTCTGCGTGCGCCTTGGATGACGCGC
CAAGCGGTTTTCACGATGCAGATGTCTCGGAGGAAGGGGAGTTGGCGCTC
TTGGAGATGTACCAAGGTGTGTTGGGCCTGGTCTGGGACGGCGCGACGGC
CGCGAACGGCGCGGCGTGGTCCTCCACCGGCAAGACAAGCAATTCGTCGG
ACATTTCCTCGCAGGCTGCCGGTGCTCTGAGCGACTTTTGTAGAGGCAGC
GATAGCCACGCATACGACGCCAGTGGCCCTCTAAGCGAGCGGGAGCCGGC
GGGTGCCCCGGCGGATGTGCTGGACCTGTCCCCTCGCTTCCTCTTCGAGA
CCATGCGACACTTGGCATCTCTTTCCTCCACGCCCTCGGCCAATCCCTCC
CCTGCGTCTTCGTCCCATCCTGTTGGTGAGGTCATGCGTGACACGGTGGG
GGGCAGTGACATGGACGGAGACGTGGTGCTGCACCCGGACCTAGCCGTAT
CGGTTTTGAGCTTCTCGGGCGCGCGGCGGGCGTCATGGGAGGCCTCAGGG
GGTAAACTTGCCTCCAACGACACTCACGGTGTGAGTGAGAGCGCGAGCCG
GGGTAAAAGACGTCGGGGGAGCAACAGCACCGCCAACAAGGACCCGGTAC
GGATTGAGGTCATCCATCAGCCTATCGCCCGCTTGGCTCTATCCCCCCAT
GGCATCGATCCGTCATCCTCCGCCCCTGCAGATCCCTTGGACAGTCTGGG
ACGCCTGGAGCTTTTGACGGCACGGCCCCTCCGGTGGCCTGGGGATGTGC
GAGCGCATCCGCGAGACCTGGTGGAGGGGTGGGGTACGCAAGGGGAGGGG
CCCGACTTCCTCTTCTCTCCCACGGCGGGGCGGGACATGCAGGGCCTGGT
CCATGGCCTTGGGCTCTGGTCGGTGATTTTTGGGATGGCCGCGATGTGCA
TTGCCCTGACGCCCTTGTGGAACTGGGTGTACAAGCGCCTGTTCAAGCGC
AAAGAGCTGTCTCCTCCCTGTCTGGACGGGGGCTGCGCACCCATCCCTGC
CATCAGCGAGGTGAAGGACGCGGCCAGCCAGGAGGAAGACCGCGCCTTCA
TTGCCACACGCATGGCGGAGCTCACCGAAAAGCAAGCGGAGCTCCTTCGA
TCCGTGGAGGTGGACATGAAAGACGTGGTAATGAAGCGGCGCGGGGGGGG
GCATCGGCCAGGGATCCTTCTCTATTGTGTACAAGGGATACTACCAGAAC
TCGCACGTGGCGATCAAGGTGTTGCGACGGGTGGATGA

Synonyms

Publications