EWM27569.1, cds3082 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|585109836|gb|EWM27569.1| (intraflagellar transport protein 72 74 [Nannochloropsis gaditana]) HSP 1 Score: 431.024 bits (1107), Expect = 1.143e-152 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 Query: 1 MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVRQLFEEEKREELCSPR 215 MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVRQLFEEEKREELCSPR Sbjct: 1 MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVRQLFEEEKREELCSPR 215
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|675194181|ref|XP_008905975.1| (hypothetical protein PPTG_11613 [Phytophthora parasitica INRA-310] >gi|568094000|gb|ETN08788.1| hypothetical protein PPTG_11613 [Phytophthora parasitica INRA-310]) HSP 1 Score: 62.7734 bits (151), Expect = 6.637e-8 Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA + + L+ +E E R + Sbjct: 242 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 366 HSP 2 Score: 62.3882 bits (150), Expect = 8.088e-8 Identity = 30/102 (29.41%), Postives = 60/102 (58.82%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENA 103 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA Sbjct: 106 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNA 207
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|566023619|gb|ETI46530.1| (hypothetical protein F443_09085 [Phytophthora parasitica P1569]) HSP 1 Score: 62.3882 bits (150), Expect = 8.324e-8 Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA + + L+ +E E R + Sbjct: 106 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 230
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|970661666|gb|KUF99117.1| (ATPase family AAA domain-containing protein 5 [Phytophthora nicotianae]) HSP 1 Score: 62.3882 bits (150), Expect = 8.516e-8 Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA + + L+ +E E R + Sbjct: 54 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 178
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|567960913|gb|ETK86460.1| (hypothetical protein L915_08902 [Phytophthora parasitica] >gi|567989628|gb|ETL39878.1| hypothetical protein L916_08821 [Phytophthora parasitica] >gi|568018843|gb|ETL93006.1| hypothetical protein L917_08742 [Phytophthora parasitica] >gi|568049306|gb|ETM46303.1| hypothetical protein L914_08775 [Phytophthora parasitica] >gi|570327279|gb|ETO75227.1| hypothetical protein F444_09139 [Phytophthora parasitica P1976] >gi|570951066|gb|ETP16323.1| hypothetical protein F441_09049 [Phytophthora parasitica CJ01A1] >gi|570984928|gb|ETP44376.1| hypothetical protein F442_09017 [Phytophthora parasitica P10297]) HSP 1 Score: 62.3882 bits (150), Expect = 8.808e-8 Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA + + L+ +E E R + Sbjct: 106 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 230
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|970659556|gb|KUF97185.1| (Intraflagellar Transport Protein 72/74 [Phytophthora nicotianae]) HSP 1 Score: 61.2326 bits (147), Expect = 1.959e-7 Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA + + L+ +E E R + Sbjct: 915 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 1039
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|970629404|gb|KUF76671.1| (Intraflagellar Transport Protein 72/74 [Phytophthora nicotianae]) HSP 1 Score: 61.2326 bits (147), Expect = 2.092e-7 Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ T+ +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA + + L+ +E E R + Sbjct: 916 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 1040
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|953488686|emb|CEG47726.1| (hypothetical protein PHALS_04870 [Plasmopara halstedii]) HSP 1 Score: 60.8474 bits (146), Expect = 2.375e-7 Identity = 38/142 (26.76%), Postives = 76/142 (53.52%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQ 143 ++IG ++ Q+ SF K L + ++ E+ L+++++ + K+ + +++ L +VR+ E L YNLA+DK+R++TDPA++ + Q NA + + L+ +E E RA+ E + + E + K+ Q Sbjct: 3 MRIGTAGPGRQVQDASFFKGKLHSKTAEISSEIDKLKREIEQDAKDKAQCAQLERKYEKLALEVRDLEGQLADYNLAMDKMRSATDPAEICQVKDQLHQRNAQEAEDVDRVFLMNKEQEKSLRAMEAETKEIHEKHQDKINQ 144
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|669145590|ref|XP_008608357.1| (hypothetical protein SDRG_04460 [Saprolegnia diclina VS20] >gi|530739788|gb|EQC38030.1| hypothetical protein SDRG_04460 [Saprolegnia diclina VS20]) HSP 1 Score: 59.6918 bits (143), Expect = 6.547e-7 Identity = 29/96 (30.21%), Postives = 55/96 (57.29%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQ 97 ++IG ++ Q+ S+ L ++ + E+ + K++ + KS + +K+ L +VR+ E L YNLA+DK+R++TDPA++R Q+Q Sbjct: 92 MRIGTAGPGRQVQDASYFTGKLHQKTSEITAEIDKITKEIDQDAKDKSQYAQLEKKYEQLAVEVRDLEGQLADYNLAMDKLRSATDPAEIRQVQEQ 187
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|301103921|ref|XP_002901046.1| (Intraflagellar Transport Protein 72/74 [Phytophthora infestans T30-4] >gi|262101384|gb|EEY59436.1| Intraflagellar Transport Protein 72/74 [Phytophthora infestans T30-4]) HSP 1 Score: 59.3066 bits (142), Expect = 7.511e-7 Identity = 29/102 (28.43%), Postives = 59/102 (57.84%), Query Frame = 0 Query: 2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENA 103 +++G ++ Q+ SF K L + + E+ L+++++ + K+ + +++ + +VR+ E L YNLA+DK+R++TDPA++R Q+Q NA Sbjct: 127 MRVGSAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREVEQDAKDKAQCAQLERKYEKMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNA 228 The following BLAST results are available for this feature:
BLAST of EWM27569.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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