rna3090, rna3090 (mRNA) Nannochloropsis gaditana

Overview
Namerna3090
Unique Namerna3090
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1050
Alignment locationCM002460.1:686083..687631 +

Link to JBrowse

Properties
Property NameValue
Productintraflagellar transport protein 72 74
Orig transcript idgnl|cribi|Naga_100015g73.6385.mrna
Orig protein idgnl|cribi|Naga_100015g73.6385
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:686083..687631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g73gene2968Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3090rna3090-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27569.1cds3082Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3090 ID=rna3090|Name=rna3090|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp
ATGCCTGGGCCAGGCATAGCAACGGCTCTGACTGCGAGCGACTTGACCGG
TCCACTTGCGGACCCCGAATACGGCTTGCGATTTCTTAATCTGCTTGCGG
ATAGGCGAATGGTCAGCAGGGGCACCACCACGAAGCGGTCCACTCCACAA
CTTTTCTTCGTCTTTGTCCTCCTTTGCCTGGTCCACACAACTGTAGCTTT
CTTGCCACAGTCCCTTCGAACACCAACGTCTTGGCGGATACGAAGCGGAG
CAAGCGTACAGCCTTTGAGGGTTAAGCGGCAGGGCCGACGGGGGGGCGGA
GGCAGTGGAACGGGGAGGGGAAACAGCAACACGGGTGGGAAGTTTGGAAG
CAGGCGAAGAAATACAAATGATGGAGCCGAGGCATCCAAAGACCCTGAAA
AAAGGCTGATCAACCTAAACAGAAAATTGACCAGCATTCTTGAGCTCGAG
AGGATTTCGTATGAGGATTTGAACGAGGATCAACGTCGCAAAGTGGACAG
AAAGGAAGAGGTGTTGGAAGAAATCAGTCGCCTCACGAAGCGAGTGCGAA
AAGAGGACTTCATTGAGGAAGCCGCGGAGCAACGAGCGGGCGCCACCTCG
GCGGAAGATCTGAATGATGACGTTGTAGGCGGGCGCATTCCTCGCACCAT
TTTGAAGCTCCTCGTCTACTGTCGTCTGTCCGATAAGGCCACCTGTGAGA
TTCTGTTGGAGCTCGGAAAAGTGAAGGTGAATGGCGTGGTTTGCGACGAT
CCAGTCGCACTTGTAGATCTTGTCAAAGATAAAATCGAATTTGACGGAGA
GCCGGTAACGTTGCCAGAGACACGACTGAAACACAAACTTCGCTCCATCG
CAGCCCAAGGGGAAGGTGACGACTTGGATGACGGGGCGCCTAAAGATTAC
TGTGCTCGGATCGATGGAGGACTGCTTATAGACTTGACCCGCAACATTCA
GAAATCTCGGGGCGACTACGTGGACAAAAGCCCGTACATAATGCGCGACG
CACAAAGGCATGGTGGTATGGGCGGCTCGGGGAGCCGTCGGGGAAGATAG
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protein sequence of rna3090

>rna3090-protein ID=rna3090-protein|Name=rna3090|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSS
TQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQI
ENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERF
QVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVR
QLFEEEKREELCSPR
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mRNA from alignment at CM002460.1:686083..687631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3090 ID=rna3090|Name=rna3090|organism=Nannochloropsis gaditana|type=mRNA|length=1549bp|location=Sequence derived from alignment at CM002460.1:686083..687631+ (Nannochloropsis gaditana)
AAGTCGCTCGCAGTCAGAGCCGTTGCTATGCCTGGCCCAGGCATAACCGG
GTTTCCCACCAGCGGTGAGAACGCTGTGGTGTCTTCGCATTGGCATCCCT
TTATCCATGAATGCTTGTGGCTGAGGAACCAGATCGGTGATTGTATTTGG
GAAAATTTATTACTCATacaccctcccacccacacGTGGATAGGGTGAGA
AGGAGCCGCTACTTGCCCTCGTCCAACGGGGCTCGGCTGCGACGCCAATG
TTGCAGATTGGCGAGTATGAAAACAGCAAAGAAGCTCAAAACGTTTCGTT
TTTGAAAGCCGTGTTGCAGGAGCGTGTCGATTTTCTAAATGGGGAGGTAA
TGCTGTTGCGGAAAGACCTCAAATCTAGTCTTCGCGCCAAGTCCTCGACC
CAGAAATATCAAAAACGCCTACACACCTTGGTAACGAAGGTTCGCGAATC
GGAAACAGCACTGTACGCATATAATTTGGCATTAGATAAGATAAGGACTT
CAACAGATCCCGCTCAGCTTCGCCACTACCAGAAACAGCAGCAGATAGAG
AATGCGGGGAGGCGCAAGGTCCTCTATGAGAGGGCCTTGCTGCGACGAGA
GCTTGAGGGGAAAGCACGCGCACTATTGGATGAAGACAGGAGAATGATGG
AAATGCTGCGGGGAAAAGTGCGTCAGTATTTGGATTTAGAGCGCTTTCAG
GTATTTGAAGAATCGAGACTGCAGCGGGATATGCTCATGAAGGAATTGTG
GaagcaagaagaaaaatacCTCGTTCAGGGAATGGGGGCCAATTTGCAAG
ATGCAGCgctcggaaaggaggggcaacAAGCCACTTCTACTGTTCGTCAG
CTctttgaagaggaaaagagggaggagctgtGTTCGCCGCGGTAAGTTGC
GTGCGTGATATTGGACGCGATATAGGAGGGTTGACGGATCGGGGAGTCCA
GCTTACATTTTGGGCATGTTTTTCCTCGTCAGAGAAACACGATTTTGCTG
TGTAAGGGAAAGACTTGCCTCATGATGCTCAAAGTCACGTTCTTTTTCAC
GCGCTACGCAGGCAGAAGGTAGCTGACATGCTGAGGAGAGTGACCTGGGT
GGAAGACGTCCGGCGTatcggaaggagaaggcacatTCAGGCAATAGACA
CGGGAAATCGAAATGAGTGGAGTGATGAGAGGGACcgggaaggtggggga
cGAGAAGTTCCCAGCGAGGGCGGTAAAGCCGGAGTAGGGCTTGAGGaatc
gaggaaggagagggaaaacttGATGAGGTTGCGGGCAGTGGAAAAGCGCA
TCGCCATGGAGATGGACGAATTGGAGTCTCAGGCGGATTATCTACGATCG
GAAATGACAGCTTGCAGATGGGTcttcgaggaggaaaataaaaGGGGAac
cggagagagggagggcgggcagctCAAAGAGGATTGTCTGTCGCTAGTGA
GACGTTTGAACGCCCTGCACTGCACCGCTGGAATGATCATGAGATGAAAG
AAGAGCACACGTGGATTAAGAAACATGGTGCAAATGGAACGTTTGCGAG
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Coding sequence (CDS) from alignment at CM002460.1:686083..687631+

>rna3090 ID=rna3090|Name=rna3090|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002460.1:686083..687631+ (Nannochloropsis gaditana)
ATGTTGCAGATTGGCGAGTATGAAAACAGCAAAGAAGCTCAAAACGTTTC
GTTTTTGAAAGCCGTGTTGCAGGAGCGTGTCGATTTTCTAAATGGGGAGG
TAATGCTGTTGCGGAAAGACCTCAAATCTAGTCTTCGCGCCAAGTCCTCG
ACCCAGAAATATCAAAAACGCCTACACACCTTGGTAACGAAGGTTCGCGA
ATCGGAAACAGCACTGTACGCATATAATTTGGCATTAGATAAGATAAGGA
CTTCAACAGATCCCGCTCAGCTTCGCCACTACCAGAAACAGCAGCAGATA
GAGAATGCGGGGAGGCGCAAGGTCCTCTATGAGAGGGCCTTGCTGCGACG
AGAGCTTGAGGGGAAAGCACGCGCACTATTGGATGAAGACAGGAGAATGA
TGGAAATGCTGCGGGGAAAAGTGCGTCAGTATTTGGATTTAGAGCGCTTT
CAGGTATTTGAAGAATCGAGACTGCAGCGGGATATGCTCATGAAGGAATT
GTGGaagcaagaagaaaaatacCTCGTTCAGGGAATGGGGGCCAATTTGC
AAGATGCAGCgctcggaaaggaggggcaacAAGCCACTTCTACTGTTCGT
CAGCTctttgaagaggaaaagagggaggagctgtGTTCGCCGCGGTAA
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Synonyms
Publications