EWM27569.1, cds3082 (CDS) Nannochloropsis gaditana

Overview
NameEWM27569.1
Unique Namecds3082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:686330..686977 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27569.1
Productintraflagellar transport protein 72 74
Orig transcript idgnl|cribi|Naga_100015g73.6385.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:686330..686977 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Homology
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|585109836|gb|EWM27569.1| (intraflagellar transport protein 72 74 [Nannochloropsis gaditana])

HSP 1 Score: 431.024 bits (1107), Expect = 1.143e-152
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVRQLFEEEKREELCSPR 215
            MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVRQLFEEEKREELCSPR
Sbjct:    1 MLQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQYLDLERFQVFEESRLQRDMLMKELWKQEEKYLVQGMGANLQDAALGKEGQQATSTVRQLFEEEKREELCSPR 215          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|675194181|ref|XP_008905975.1| (hypothetical protein PPTG_11613 [Phytophthora parasitica INRA-310] >gi|568094000|gb|ETN08788.1| hypothetical protein PPTG_11613 [Phytophthora parasitica INRA-310])

HSP 1 Score: 62.7734 bits (151), Expect = 6.637e-8
Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA   + +    L+ +E E   R +
Sbjct:  242 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 366          

HSP 2 Score: 62.3882 bits (150), Expect = 8.088e-8
Identity = 30/102 (29.41%), Postives = 60/102 (58.82%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENA 103
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA
Sbjct:  106 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNA 207          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|566023619|gb|ETI46530.1| (hypothetical protein F443_09085 [Phytophthora parasitica P1569])

HSP 1 Score: 62.3882 bits (150), Expect = 8.324e-8
Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA   + +    L+ +E E   R +
Sbjct:  106 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 230          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|970661666|gb|KUF99117.1| (ATPase family AAA domain-containing protein 5 [Phytophthora nicotianae])

HSP 1 Score: 62.3882 bits (150), Expect = 8.516e-8
Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA   + +    L+ +E E   R +
Sbjct:   54 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 178          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|567960913|gb|ETK86460.1| (hypothetical protein L915_08902 [Phytophthora parasitica] >gi|567989628|gb|ETL39878.1| hypothetical protein L916_08821 [Phytophthora parasitica] >gi|568018843|gb|ETL93006.1| hypothetical protein L917_08742 [Phytophthora parasitica] >gi|568049306|gb|ETM46303.1| hypothetical protein L914_08775 [Phytophthora parasitica] >gi|570327279|gb|ETO75227.1| hypothetical protein F444_09139 [Phytophthora parasitica P1976] >gi|570951066|gb|ETP16323.1| hypothetical protein F441_09049 [Phytophthora parasitica CJ01A1] >gi|570984928|gb|ETP44376.1| hypothetical protein F442_09017 [Phytophthora parasitica P10297])

HSP 1 Score: 62.3882 bits (150), Expect = 8.808e-8
Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA   + +    L+ +E E   R +
Sbjct:  106 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 230          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|970659556|gb|KUF97185.1| (Intraflagellar Transport Protein 72/74 [Phytophthora nicotianae])

HSP 1 Score: 61.2326 bits (147), Expect = 1.959e-7
Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA   + +    L+ +E E   R +
Sbjct:  915 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 1039          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|970629404|gb|KUF76671.1| (Intraflagellar Transport Protein 72/74 [Phytophthora nicotianae])

HSP 1 Score: 61.2326 bits (147), Expect = 2.092e-7
Identity = 34/125 (27.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARAL 126
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++  T+  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA   + +    L+ +E E   R +
Sbjct:  916 MRVGTAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREIEQDAKDKAQCAQLERKYETMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEKSVRTM 1040          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|953488686|emb|CEG47726.1| (hypothetical protein PHALS_04870 [Plasmopara halstedii])

HSP 1 Score: 60.8474 bits (146), Expect = 2.375e-7
Identity = 38/142 (26.76%), Postives = 76/142 (53.52%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENAGRRKVLYERALLRRELEGKARALLDEDRRMMEMLRGKVRQ 143
            ++IG     ++ Q+ SF K  L  +   ++ E+  L+++++   + K+   + +++   L  +VR+ E  L  YNLA+DK+R++TDPA++   + Q    NA   + +    L+ +E E   RA+  E + + E  + K+ Q
Sbjct:    3 MRIGTAGPGRQVQDASFFKGKLHSKTAEISSEIDKLKREIEQDAKDKAQCAQLERKYEKLALEVRDLEGQLADYNLAMDKMRSATDPAEICQVKDQLHQRNAQEAEDVDRVFLMNKEQEKSLRAMEAETKEIHEKHQDKINQ 144          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|669145590|ref|XP_008608357.1| (hypothetical protein SDRG_04460 [Saprolegnia diclina VS20] >gi|530739788|gb|EQC38030.1| hypothetical protein SDRG_04460 [Saprolegnia diclina VS20])

HSP 1 Score: 59.6918 bits (143), Expect = 6.547e-7
Identity = 29/96 (30.21%), Postives = 55/96 (57.29%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQ 97
            ++IG     ++ Q+ S+    L ++   +  E+  + K++    + KS   + +K+   L  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q
Sbjct:   92 MRIGTAGPGRQVQDASYFTGKLHQKTSEITAEIDKITKEIDQDAKDKSQYAQLEKKYEQLAVEVRDLEGQLADYNLAMDKLRSATDPAEIRQVQEQ 187          
BLAST of EWM27569.1 vs. NCBI_GenBank
Match: gi|301103921|ref|XP_002901046.1| (Intraflagellar Transport Protein 72/74 [Phytophthora infestans T30-4] >gi|262101384|gb|EEY59436.1| Intraflagellar Transport Protein 72/74 [Phytophthora infestans T30-4])

HSP 1 Score: 59.3066 bits (142), Expect = 7.511e-7
Identity = 29/102 (28.43%), Postives = 59/102 (57.84%), Query Frame = 0
Query:    2 LQIGEYENSKEAQNVSFLKAVLQERVDFLNGEVMLLRKDLKSSLRAKSSTQKYQKRLHTLVTKVRESETALYAYNLALDKIRTSTDPAQLRHYQKQQQIENA 103
            +++G     ++ Q+ SF K  L  +   +  E+  L+++++   + K+   + +++   +  +VR+ E  L  YNLA+DK+R++TDPA++R  Q+Q    NA
Sbjct:  127 MRVGSAGPGRQVQDASFFKGKLHSKTAEITSEIEKLQREVEQDAKDKAQCAQLERKYEKMALEVRDLEGQLADYNLAMDKMRSATDPAEIRQVQEQLHQRNA 228          
The following BLAST results are available for this feature:
BLAST of EWM27569.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109836|gb|EWM27569.1|1.143e-152100.00intraflagellar transport protein 72 74 [Nannochlor... [more]
gi|675194181|ref|XP_008905975.1|6.637e-827.20hypothetical protein PPTG_11613 [Phytophthora para... [more]
gi|566023619|gb|ETI46530.1|8.324e-827.20hypothetical protein F443_09085 [Phytophthora para... [more]
gi|970661666|gb|KUF99117.1|8.516e-827.20ATPase family AAA domain-containing protein 5 [Phy... [more]
gi|567960913|gb|ETK86460.1|8.808e-827.20hypothetical protein L915_08902 [Phytophthora para... [more]
gi|970659556|gb|KUF97185.1|1.959e-727.20Intraflagellar Transport Protein 72/74 [Phytophtho... [more]
gi|970629404|gb|KUF76671.1|2.092e-727.20Intraflagellar Transport Protein 72/74 [Phytophtho... [more]
gi|953488686|emb|CEG47726.1|2.375e-726.76hypothetical protein PHALS_04870 [Plasmopara halst... [more]
gi|669145590|ref|XP_008608357.1|6.547e-730.21hypothetical protein SDRG_04460 [Saprolegnia dicli... [more]
gi|301103921|ref|XP_002901046.1|7.511e-728.43Intraflagellar Transport Protein 72/74 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3090rna3090Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications