rna3088, rna3088 (mRNA) Nannochloropsis gaditana

Overview
Namerna3088
Unique Namerna3088
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1342
Alignment locationCM002460.1:683146..684021 -

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Properties
Property NameValue
ProductEF-Hand 1, calcium-binding site
Orig transcript idgnl|cribi|Naga_100015g75.6408.mrna
Orig protein idgnl|cribi|Naga_100015g75.6408
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:683146..684021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100015g75gene2966Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27592.1cds3080Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3088rna3088-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3088 ID=rna3088|Name=rna3088|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp
AACAGAGAGGCCTAAGAGCCTTCCCCCCGCGTTTGGGACGTTCTCGGCTA
CATGATCAGAGGAAATACTGACCTGTTGCACGCGGAAATATGCTCCACAA
CCACTTTCACCACAGCATTCAAGGACAGGCTGGCGGGACCGACGGGTTCA
CTCACAAATTGCCTCCAGCACTGTCCGCGGGATCCCCCACCTCCTCACCT
CCCCTGTTCAACTTAGGTCGAAAGAGCTTAATGACGCCTTGAATGTCCTT
TAGCCGCGGATATTGCATTTTTAGTGCATTTATCACCCTTTTCGACAATT
CCATGTCACTGTCCCTGCAATTACCACGTTTTTGCCATGCTTTTCTGCGG
TTTCCAGGGACGAATGCCGGCGTTTCGCATGCCATAAACCTGCACAAAAG
GGCTATTAGCACGCAAGGCGTAACCAGATGCGCCGCAACCTCGCGTTCTG
CCTTCGATCCCGAGCAGGCGCGACTCTTCGAAGAAGAGCAGATTGTCGCG
GTGACTTTCGATGACAAACCCCTCAAACCCATTTCCAAGCGGGCAGGACA
TGAAAATCGAAAGGGCCCGCCTTTGCATCGAGCTTTCTCCGTTTTCCTGT
TCGACACGCAGAATCGACTGCTCTTGCAAAAGCGTGCCCCTACCAAGATT
ACATTTCCCAACGCTTGGACCAATACCTGCTGCTCGCACCCTTTGTGGAG
CGAGCACGAGCTCGGGGACGACCGGCAGGACCCTGTCCTGGGCTGCAAGC
GCGCAGCCATTCGGAAGCTCGAGCATGAGCTCGGCATCCCAATCTCCTCT
CTGAGACATGAGGACTTCATTTACATGTCTCGCATCCACTACATCAGCGA
CTCTGGCGCCGAGTGGGGGGAGCACGAAATCGACTACATTCTGCTGGCTC
GGAAAGACGTGGTCCTGACACCCAACGAGAACGAGGTCTCCGAGACGCGC
TACGTGGCCGCCCCCGAGCTCAAGGCCATGATGCGCAGGGCGGAATTGCA
CCGGGGCGAGAGTCCGGAGGTCATACTGGCCGAAGACGCGGCGTTGGGCG
GGGCACAGGGGGTAGGAGGGCGGGACCCGGAGCAGGAGGACGTGCGGGGC
CACATTTACTTTACGCCCTGGAGCCGGGCTATCATGGAGCGATGGCTGTA
TACGTGGTGGCCGGATGTGGGCGCGGATATGGGCAAGCTCGAGAAACACC
GGGACACAGCACGGATCCATCGGATCGGTCGCGTGGATTGAGATGGGGCA
GGAGCCCCGAGACAGCGACTGAGCAGCTCTGAAATCGATTGTTTTAAGGA
GGAGGAGGAAAGAACGATCACACAATGATGTGTGGCTGCGAG
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protein sequence of rna3088

>rna3088-protein ID=rna3088-protein|Name=rna3088|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MGNKGSTQLLPTVDTMLKAFGPEEMLALEDRFPVSPSSATRHHQVTHRNL
YIGRKKDNSSQASLRFAPVLITREEFVALLGEGFGPCMKRLLRRLFTVLD
ANGTGALEYQEHVGAMYFFKHASPVERFRVIFHMYEPKCSSASSSTTAAA
SKVYLHKDHVMALCTEIFSTLSEVEAGPQRVMASFQRDNDDVSWDFAPPL
ASSEGVVPKPVYVQSQAAPFKDIIGVMVDMIFLRWDADRDGRLNLLDFEA
FASRHPENGIEDVLGKLVTSPHVARLMYARKVQGKFVNGKG
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mRNA from alignment at CM002460.1:683146..684021-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3088 ID=rna3088|Name=rna3088|organism=Nannochloropsis gaditana|type=mRNA|length=876bp|location=Sequence derived from alignment at CM002460.1:683146..684021- (Nannochloropsis gaditana)
ATGGGGAATAAAGGGTCGACACAATTGCTTCCCACGGTGGACACCATGCT
CAAGGCTTTCGGCCCCGAGGAGATGCTCGCGCTGGAGGACCGTTTCCCCG
TTTCTCCGTCATCCGCGACACGGCACCATCAAGTAACACATAGAAACTTG
TATATTGGTAGAAAGAAAGACAACAGCAGCCAGGCATCTCTTCGCTTCGC
GCCTGTCCTCATCACTAGAGAAGAATTTGTTGCCCTCCTTGGGGAGGGCT
TTGGTCCGTGCATGAAGCGGCTCCTCCGCCGCCTCTTTACAGTGCTAGAC
GCCAATGGTACGGGCGCACTAGAGTATCAAGAGCATGTGGGCGCGATGTA
CTTTTTCAAGCATGCGAGTCCCGTAGAGCGATTCCGCGTCATTTTTCATA
TGTACGAGCCAAAGTGCTCTTCTGCTTCCTCTTCCACTACGGCGGCAGCT
AGTAAAGTCTATCTCCATAAGGACCATGTAATGGCATTGTGCACAGAAAT
ATTTTCCACGCTCAGTGAGGTGGAAGCTGGCCCGCAGCGAGTCATGGCCT
CATTTCAACGGGACAATGACGACGTATCATGGGACTTCGCGCCTCCTCTT
GCTTCCTCGGAGGGCGTTGTACCTAAGCCGGTCTACGTACAGAGTCAGGC
CGCGCCATTCAAGGATATAATTGGTGTTATGGTGGACATGATATTTCTCC
GGTGGGATGCGGACAGGGACGGAAGATTGAACCTGCTGGACTTCGAGGCC
TTTGCGAGCCGCCACCCTGAGAACGGCATCGAAGATGTGTTGGGGAAGCT
GGTGACCTCGCCCCACGTGGCGCGTCTGATGTACGCGAGGAAAGTCCAAG
GCAAGTTTGTGAACGGAAAGGGATAG
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Coding sequence (CDS) from alignment at CM002460.1:683146..684021-

>rna3088 ID=rna3088|Name=rna3088|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002460.1:683146..684021- (Nannochloropsis gaditana)
ATGGGGAATAAAGGGTCGACACAATTGCTTCCCACGGTGGACACCATGCT
CAAGGCTTTCGGCCCCGAGGAGATGCTCGCGCTGGAGGACCGTTTCCCCG
TTTCTCCGTCATCCGCGACACGGCACCATCAAGTAACACATAGAAACTTG
TATATTGGTAGAAAGAAAGACAACAGCAGCCAGGCATCTCTTCGCTTCGC
GCCTGTCCTCATCACTAGAGAAGAATTTGTTGCCCTCCTTGGGGAGGGCT
TTGGTCCGTGCATGAAGCGGCTCCTCCGCCGCCTCTTTACAGTGCTAGAC
GCCAATGGTACGGGCGCACTAGAGTATCAAGAGCATGTGGGCGCGATGTA
CTTTTTCAAGCATGCGAGTCCCGTAGAGCGATTCCGCGTCATTTTTCATA
TGTACGAGCCAAAGTGCTCTTCTGCTTCCTCTTCCACTACGGCGGCAGCT
AGTAAAGTCTATCTCCATAAGGACCATGTAATGGCATTGTGCACAGAAAT
ATTTTCCACGCTCAGTGAGGTGGAAGCTGGCCCGCAGCGAGTCATGGCCT
CATTTCAACGGGACAATGACGACGTATCATGGGACTTCGCGCCTCCTCTT
GCTTCCTCGGAGGGCGTTGTACCTAAGCCGGTCTACGTACAGAGTCAGGC
CGCGCCATTCAAGGATATAATTGGTGTTATGGTGGACATGATATTTCTCC
GGTGGGATGCGGACAGGGACGGAAGATTGAACCTGCTGGACTTCGAGGCC
TTTGCGAGCCGCCACCCTGAGAACGGCATCGAAGATGTGTTGGGGAAGCT
GGTGACCTCGCCCCACGTGGCGCGTCTGATGTACGCGAGGAAAGTCCAAG
GCAAGTTTGTGAACGGAAAGGGATAG
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Synonyms
Publications