EWM27592.1, cds3080 (CDS) Nannochloropsis gaditana

Overview
NameEWM27592.1
Unique Namecds3080
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:683146..684021 -

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Properties
Property NameValue
Protein idEWM27592.1
ProductEF-Hand 1, calcium-binding site
Orig transcript idgnl|cribi|Naga_100015g75.6408.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:683146..684021 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Homology
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BLAST of EWM27592.1 vs. NCBI_GenBank
Match: gi|585109859|gb|EWM27592.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0 
Query:    1 MGNKGSTQLLPTVDTMLKAFGPEEMLALEDRFPVSPSSATRHHQVTHRNLYIGRKKDNSSQASLRFAPVLITREEFVALLGEGFGPCMKRLLRRLFTVLDANGTGALEYQEHVGAMYFFKHASPVERFRVIFHMYEPKCSSASSSTTAAASKVYLHKDHVMALCTEIFSTLSEVEAGPQRVMASFQRDNDDVSWDFAPPLASSEGVVPKPVYVQSQAAPFKDIIGVMVDMIFLRWDADRDGRLNLLDFEAFASRHPENGIEDVLGKLVTSPHVARLMYARKVQGKFVNGKG 291
            MGNKGSTQLLPTVDTMLKAFGPEEMLALEDRFPVSPSSATRHHQVTHRNLYIGRKKDNSSQASLRFAPVLITREEFVALLGEGFGPCMKRLLRRLFTVLDANGTGALEYQEHVGAMYFFKHASPVERFRVIFHMYEPKCSSASSSTTAAASKVYLHKDHVMALCTEIFSTLSEVEAGPQRVMASFQRDNDDVSWDFAPPLASSEGVVPKPVYVQSQAAPFKDIIGVMVDMIFLRWDADRDGRLNLLDFEAFASRHPENGIEDVLGKLVTSPHVARLMYARKVQGKFVNGKG
Sbjct:    1 MGNKGSTQLLPTVDTMLKAFGPEEMLALEDRFPVSPSSATRHHQVTHRNLYIGRKKDNSSQASLRFAPVLITREEFVALLGEGFGPCMKRLLRRLFTVLDANGTGALEYQEHVGAMYFFKHASPVERFRVIFHMYEPKCSSASSSTTAAASKVYLHKDHVMALCTEIFSTLSEVEAGPQRVMASFQRDNDDVSWDFAPPLASSEGVVPKPVYVQSQAAPFKDIIGVMVDMIFLRWDADRDGRLNLLDFEAFASRHPENGIEDVLGKLVTSPHVARLMYARKVQGKFVNGKG 291
The following BLAST results are available for this feature:
BLAST of EWM27592.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109859|gb|EWM27592.1|0.000e+0100.00EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3088rna3088Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications