EWM27613.1, cds3073 (CDS) Nannochloropsis gaditana

Overview
NameEWM27613.1
Unique Namecds3073
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:667635..668237 -
Alignment locationCM002460.1:666862..667461 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27613.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g21.5332.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:667635..668237 -
CM002460.1supercontigCM002460.1:666862..667461 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|585109881|gb|EWM27613.1| (hypothetical protein Naga_100069g21 [Nannochloropsis gaditana])

HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0
Query:    1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNPPVKTAPKPHLTSSVSSGPRLGLEHASIPPPRTPLSFGRRQGPGKAGGHGKGCGRRGACPGEGGRRKPCMTWTPSSRKTMLSCQGQTRRVKAGGGGRLADWERRLAGAGPGGRWEEGASH 400
            MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNPPVKTAPKPHLTSSVSSGPRLGLEHASIPPPRTPLSFGRRQGPGKAGGHGKGCGRRGACPGEGGRRKPCMTWTPSSRKTMLSCQGQTRRVKAGGGGRLADWERRLAGAGPGGRWEEGASH
Sbjct:    1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNPPVKTAPKPHLTSSVSSGPRLGLEHASIPPPRTPLSFGRRQGPGKAGGHGKGCGRRGACPGEGGRRKPCMTWTPSSRKTMLSCQGQTRRVKAGGGGRLADWERRLAGAGPGGRWEEGASH 400          
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|1210514249|dbj|GAX27031.1| (hypothetical protein FisN_9Lh347 [Fistulifera solaris])

HSP 1 Score: 83.1889 bits (204), Expect = 5.246e-14
Identity = 72/290 (24.83%), Postives = 122/290 (42.07%), Query Frame = 0
Query:    1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTR-------VSVEDDGSPVGFE----------MDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWE----LVEKTMKAKVADAEEGG--GADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHML-QTLQIPLKRDSA-GHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWE 265
            M+EGG  PW+ QRH      D+  +  PLP PP G+ W +         V+ +DD   +  E          +      E E ++ +G     ++++      A  V  L   +G  + +  +++       +++T+ +   D+ + G  G  G          +  LG D VE         HV+LPTDT+ G+ L YK+ +  LR  N F G    +  + L IP+ + +     ++ +    +       + A       E + YL+ ADW LE A+   +EDR WE
Sbjct:    1 MSEGGFFPWKVQRHVTKPSADYSRLSSPLPSPPNGMKWHQNTETREWKLVAQKDDIPELITEERAVDNLPSTLPQKVDDESEWEVLSGE--NPSSSESYAAPKAGSVRSLASFEGGDIASHLSSQLSHTSFKIQRTLSSSTIDSTDPGILGPSG----------KGILGVDYVE---------HVILPTDTLQGICLAYKINSTRLRQANHFSGHSLLLAPKKLVIPISQKALRSGFIRVQDTDAKQYKLHALLAAYPDLSASEASAYLELADWVLEDALQTAKEDREWE 269          
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|954194224|gb|KRX06960.1| (hypothetical protein PPERSA_07123 [Pseudocohnilembus persalinus])

HSP 1 Score: 71.2478 bits (173), Expect = 3.732e-10
Identity = 36/115 (31.30%), Postives = 65/115 (56.52%), Query Frame = 0
Query:  158 FLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATR--CTDEEEIT-----YYLDAADWRLEAAVAEHREDRAWE 265
            ++ H +LP+DT+ GL +RY V+  +++MFND  GE+    +TL IP   +   +V+    +    V++QQ I+  +    DE++ +     +YL+  +W ++ A   +RED  WE
Sbjct:  193 YIVHKILPSDTLIGLSIRYDVSEHKIKMFNDLDGEEIWFKKTLNIP---NPQTNVVGDSNQDLEEVIKQQQISQFKFHVLDEKDKSEKMAKFYLEDHNWDIQMAAKAYREDVEWE 304          
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|223994547|ref|XP_002286957.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978272|gb|EED96598.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 70.8626 bits (172), Expect = 1.089e-9
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 0
Query:  153 ATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHML-QTLQIP--LKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAW 264
            +T   ++ HVVLPTDT+ G+ L YK++A  LRM N F G    M  + L+IP  +K  + G +++ + R ++       +      +  E   YLD ++W LE A+   RED  W
Sbjct:  294 STGDPYIEHVVLPTDTLQGICLAYKISATRLRMENGFSGNCLQMAPKKLKIPTNIKTYTKGMMIRTQDRTSKEFKLYALVAEVPSMELVEAKAYLDLSNWDLEEALRSAREDDGW 408          
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|397642652|gb|EJK75366.1| (hypothetical protein THAOC_02910 [Thalassiosira oceanica])

HSP 1 Score: 65.855 bits (159), Expect = 3.108e-8
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0
Query:  157 AFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPL-KRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITY-----YLDAADWRLEAAVAEHREDRA 263
            + L H V PTDT  G+ LRYKVT  ELR  N        +++ L IPL +RD    +    Q PTR  +    +  TR +    +T+     YL+  DW ++AAV   RED A
Sbjct:  228 SVLYHEVRPTDTFQGICLRYKVTPTELRRANRLLSNNLSLVEKLAIPLNQRDERAAIT---QIPTREEIVADLV--TRVSASATLTHTEARAYLELNDWNMDAAVENIREDFA 335          
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|224006165|ref|XP_002292043.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972562|gb|EED90894.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 62.3882 bits (150), Expect = 8.109e-8
Identity = 54/172 (31.40%), Postives = 78/172 (45.35%), Query Frame = 0
Query:  108 RWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHML-QTLQIPLKRDSAGHVLKHRQRPTRAVLRQQ----FINATRCTDE-------EEITYYLDAADWRLEAAVAEHREDRAWEAA 267
            RWE  E T + K+  +      D G  A  Q  +E       V   ++ + + H VLPTDT  G+ LRYKVTA +LR  N   G    +    L IP+K    G V K  Q+ T+ +  +Q     ++AT   +E        E   YL+  D  L  A+A  +ED  W ++
Sbjct:   32 RWEHNETTKEWKLVPS----IVDDGPEAKVQAADEG------VPVTSSSSCIYHKVLPTDTFQGICLRYKVTATDLRRANKMMGTNLKLAPSNLLIPIK----GGVSKLDQKQTKELTTEQKIAAILSATSTREEGTKKMGYSEARAYLELNDGDLNGAIANAKEDLGWSSS 189          
The following BLAST results are available for this feature:
BLAST of EWM27613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585109881|gb|EWM27613.1|0.000e+0100.00hypothetical protein Naga_100069g21 [Nannochlorops... [more]
gi|1210514249|dbj|GAX27031.1|5.246e-1424.83hypothetical protein FisN_9Lh347 [Fistulifera sola... [more]
gi|954194224|gb|KRX06960.1|3.732e-1031.30hypothetical protein PPERSA_07123 [Pseudocohnilemb... [more]
gi|223994547|ref|XP_002286957.1|1.089e-933.91predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397642652|gb|EJK75366.1|3.108e-837.17hypothetical protein THAOC_02910 [Thalassiosira oc... [more]
gi|224006165|ref|XP_002292043.1|8.109e-831.40predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3081rna3081Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications