EWM27611.1, cds3067 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|585109879|gb|EWM27611.1| (hypothetical protein Naga_100069g15 [Nannochloropsis gaditana]) HSP 1 Score: 343.199 bits (879), Expect = 1.500e-119 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168
MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA
Sbjct: 1 MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|553181697|ref|XP_005853609.1| (hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526] >gi|422295449|gb|EKU22748.1| hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.36 bits (760), Expect = 1.480e-101 Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0
Query: 21 MMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168
MMFLRLSI ALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA
Sbjct: 1 MMFLRLSILALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 148
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|219112723|ref|XP_002178113.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410998|gb|EEC50927.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 68.9366 bits (167), Expect = 1.236e-11 Identity = 49/154 (31.82%), Postives = 78/154 (50.65%), Query Frame = 0
Query: 21 MMFLRLSIFALLAASVFAFVPPA---PRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDSS--FPQIVRAAGFAGEKFKKKGS-FDGVPYKK 167
M L+IFA L AF P + R + S S + E +K +T+A +C GECSID+V+DL+ L + K L +L EV + L +N K D VR+ ++A+ R + S +P + + G++G+ K + +D +P KK
Sbjct: 1 MRISSLAIFATLLVGNHAFAPASRLQSRTMTSLSLMSADETDK-IVTQASDCAEGECSIDEVDDLIQILHAQQKELSNRLDEVRVMIKSLEVVNKDDDRKVDQVRETVRAIFRVFQASDKASGNDYPSLTKPMGYSGDVGKGSTTAYDALPPKK 153
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1210521114|dbj|GAX19862.1| (hypothetical protein FisN_1Lh679 [Fistulifera solaris]) HSP 1 Score: 62.7734 bits (151), Expect = 2.546e-9 Identity = 44/154 (28.57%), Postives = 80/154 (51.95%), Query Frame = 0
Query: 21 MMFLRLSIFALLAASVFAFVPPAPRVIRSASQ--VVFAEAEKN-FITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDS--SFPQIVRAAGFAGEKFKKKGS-FDGVPYKK 167
M L L+ F L AS + F P +RSA+ + ++E + I + ++C EC IDDV++L+ L+ + K L +L +V L +NG+ K D VR+ ++A+ R + + S ++P + + G++GE + +D +P K+
Sbjct: 1 MRILSLAPFFALVASSYGFTTAPP--MRSAATRLSLMTQSESDALIAKVNDCAESECGIDDVSELIYTLQEQQKELSDRLEQVRKMIHVLDHINGSDDRKVDEVRETVRAIFRIFQMGDKASGNNYPSLSKPVGWSGEVGNGPTTAYDALPPKR 152
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1210521113|dbj|GAX19861.1| (hypothetical protein FisN_1Lh680 [Fistulifera solaris]) HSP 1 Score: 62.3882 bits (150), Expect = 2.566e-9 Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0
Query: 22 MFLRLSIFALLAASVFAFVPP-----APRVIRSASQVVFAEAEKNFITE-ADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGE-KFKKKGSFDGVPYKK 167
M RL+I + + +SV AF P P+ +A ++ + E + I + AD C GECSID+V DL+ +L+ + K L +L V L +N K D VR +K +LR D + +FP GFAG+ ++D +P KK
Sbjct: 1 MLSRLAILSFILSSVAAFQPAVRLVITPKCSSTARSILLSNEETSQILQSADECAAGECSIDEVADLVAELKDQEKLLSERLEAVMNAVAHLQHLNAKKERKTDEVRAFVKDMLRVFDTS-KPMAFP-----TGFAGDIGDGPTTAYDALPPKK 148
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|224002314|ref|XP_002290829.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974251|gb|EED92581.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 60.8474 bits (146), Expect = 1.280e-8 Identity = 38/151 (25.17%), Postives = 81/151 (53.64%), Query Frame = 0
Query: 22 MFLRLSIFALLAASVF-AFVPPAPRVIRSASQVVFAEAEKNFI-TEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNG---APLAKDAVRDIIKAVLRAMDVDPEDSS--FPQIVRAAGFAGE-KFKKKGSFDGVP 164
M R ++ +LLA V AF+ + R++ + + E ++I +EA+ C GEC++D+V L+ L+ + L ++ E++ + L +NG P+ D V++ ++A+ R + + S +P + + G++GE + + ++D +P
Sbjct: 1 MLYRTTLLSLLAIGVTNAFMTAPSAITRTSPLNLMSAKEIDYIMSEAEQCAAGECALDEVESLITNLQSQQSLLSKRIGEIDTLVKDLEHINGRDNRPV--DEVKETVRAIFRVFSLGAKASGNDYPALSKPMGYSGETRGGGQTAYDVLP 149
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1072231039|gb|OEU15772.1| (hypothetical protein FRACYDRAFT_269481 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 59.6918 bits (143), Expect = 2.866e-8 Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = 0
Query: 22 MFLRLSIFALLAASVFAFVPPAPRVI--------RSASQVVFAEAEK-NFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFK-KKGSFDGVPYKK 167
M + SI AL+ S AF P V+ +A V+ ++ E + + +++ C ECS+D+V+DL++ L+ K L+ +L ++ L +N K D VR+ +K +LR + D + FPQ G+AG+ K + ++D +P KK
Sbjct: 1 MLFKSSILALMLTSAAAFSTMKPLVMIRPAIIASTTAHSVIMSDEETASILKKSEECAASECSLDEVDDLVVTLKDTQKELEVRLEKIMNMISHLQHINEKEERKTDEVREFVKDMLRVFNTD-KPMVFPQ-----GYAGDVGKGSQTAYDVLPPKK 151
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|397584033|gb|EJK52869.1| (hypothetical protein THAOC_27807 [Thalassiosira oceanica]) HSP 1 Score: 57.7658 bits (138), Expect = 2.412e-7 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0
Query: 26 LSIFALLAASVFAFVPPAPRVI-RSASQVVFAEAE-KNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKL 97
++I +LLA AF P PRV R+A +V EAE + +A C GEC++DDV DL+ +LR + K L +L
Sbjct: 5 IAILSLLAVGSHAFAPSLPRVHPRTACNLVMTEAEITAILDQAHECAEGECAVDDVEDLIAELRTQQKVLSERL 78
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|397566513|gb|EJK45078.1| (hypothetical protein THAOC_36328 [Thalassiosira oceanica]) HSP 1 Score: 58.5362 bits (140), Expect = 3.246e-7 Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0
Query: 26 LSIFALLAASVFAFVPPAPRV-IRSASQVVFAEAE-KNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKL 97
++I +LLA AF P PRV R+A +V EAE + +A +C GEC++DDV DL+ +LR + K L +L
Sbjct: 109 IAILSLLAVGSHAFAPSLPRVQPRTACNLVMTEAEITAILDQAHDCAEGECAVDDVEDLIAELRTQQKVLSERL 182
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1072231038|gb|OEU15771.1| (hypothetical protein FRACYDRAFT_209201 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 56.225 bits (134), Expect = 7.017e-7 Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 0
Query: 28 IFALLAASVFAFVPPAPRVIRSASQVVFAEAEKN--FITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGA-PLAKDAVRDIIKAVLRAMDVDPEDS--SFPQIVRAAGFAGEKFKKKGS-FDGVPYKK 167
IF L+A++ P RV + ++AE + F T D C+ GECSID+++ L+ L+ + K +L V+ + L +N A + D VR+ ++A+ R + + S ++P + + G++G+ K + +D +P KK
Sbjct: 6 IFCLVASAQAFTTAPTARVFPQTQLNLMSQAETDEAFKTATD-CVEGECSIDEIDGLISLLKDQQKEASERLTSVKTMIKSLDTVNSADDRSVDEVRETVRAIFRVFQLGDKASGNNYPSLSKPMGWSGDVGKGSTTAYDALPPKK 150 The following BLAST results are available for this feature:
BLAST of EWM27611.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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