rna3075, rna3075 (mRNA) Nannochloropsis gaditana

Overview
Namerna3075
Unique Namerna3075
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length282
Alignment locationCM002460.1:653206..654922 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g15.5330.mrna
Orig protein idgnl|cribi|Naga_100069g15.5330
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:653206..654922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100069g15gene2953Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3075rna3075-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27611.1cds3067Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3075 ID=rna3075|Name=rna3075|organism=Nannochloropsis gaditana|type=mRNA|length=282bp
ATGTTGTTTGTACAGACAAGACAGAAAGGCGCGGCACAGAGTCGCGGTGA
CACAAGAAAGGATACCAGGACATGGACCGAGGGACACGCGTCGGTCATCC
GCCATGCACACCGATGCTTTAGAGCCCAAGTTCGGTTCACCCAACTTCAC
CACATGAGACGAAGTAGGGTGGCTAGAGACCACATGCTTTGGGGAGATGG
AAGAGAGCACCTGGTGCCGGAGTTTTCCGACACAAGTTCGAGGGAGGAAA
GGCAGGTTGAAACCATAAGGTGGCAGCGGTAA
back to top

protein sequence of rna3075

>rna3075-protein ID=rna3075-protein|Name=rna3075|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSA
SQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEV
EACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFA
GEKFKKKGSFDGVPYKKA
back to top

mRNA from alignment at CM002460.1:653206..654922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3075 ID=rna3075|Name=rna3075|organism=Nannochloropsis gaditana|type=mRNA|length=1717bp|location=Sequence derived from alignment at CM002460.1:653206..654922+ (Nannochloropsis gaditana)
TGACAGAGGGCAATCCAGGGACTGGGAAGCTTGAAGTGCCGGCCAAACCC
TGACCAGATGCATCGGCTTCCTCTCTATACTGGTGCTTTTGGCACACGCA
CCGATTAGGCTGCGTCTTGACAAGACTTTGCCTCTCCAGTCTGTGACGTT
TTACTTGCATACGGCGGTGCTGGGTGCATAGGCAAAGAGTCTCTTCTGTT
TGctgttctctccctctttttttccgcTTGCCCACAGTGGTCGTCCTCCG
ATTGTTctcgatgaaggagggaagcgcaCCTAGATTTGTTTCGATACGAA
AGTTTTCTTCACCATTCACCTGCAGTTTCTCTCCGCTCTGGAAAAATTGT
ATCGCATCGTTCCTTCAATTTGCCTTGCAGCTGCATTTTGAGACATGTTA
GCAACTCCCAAAAAGTGTCGAAAGTGCTCCGTTCGATACTTGAAGTTGGT
TTCATATCAATCTgctgcctcgccctcttcagCCCTTCATGAGCACCCGC
TTACTTCGATCGTGCCAATACACACAGCCAAACAAAACCACTAGAACCAT
GATGTTCTTGCGCTTGTCAATTTTTGCCCTCCTGGCAGCGTCGGTTTTTG
CCTTCGTGCCCCCCGCTCCTCGTGTCATACGGTCTGCCTCCCAGGTCGTC
TTTGCTGAGGCGGAGAAGAATTTCATCACGGTACGTGATTCTTATATCCT
TTGAAAGGTATTTCTTAGCCGACTTGTCATTCTCACCAAGCTTTTTATAg
agctgcgggagggaggacgtttAAACTCTGGCGCCTTCCTGTCGCTGTTC
TTGAATTTGGAGGACAGGCAGAATCTTTCGCCTTGTCCCGAGTGATTGCT
GCTTGGTCATCGACGGGACACGGTTTAAAATTCATCGcatcttcttgtcc
tccttaTGTCGGGACGGGTCACAGCAGGGGCAAAATTTGCTCAGCAACTC
GTCCTCGCGCCATCTGGCGGATTGTCGCCAGAGCGGACGAGCCCCACTCA
ACACTCGCGTAATATGCCTTCTTCATTTCCCACGTGACAGGAGGCGGACA
ATTGCTTGAACGGGGAATGCTCCATCGACGACGTGAACGATCTCCTCATT
CAGCTTCGAGTGGAAATCAAGAGCCTGAAAACCAAATTGGCCGAGGTAGA
AGCTTGCGAGCAGCAGCTTACGCAAATGAACGGTGCCCCACTGGCGAAGG
ACGCCGTCAGGGACATCATCAAGGCGGTCCTTCGCGCCATGGACGTGGAT
CCCGAGGACTCCAGCTTCCCCCAGATTGTGCGTGCGGCCGGATTCGCGGG
AGAGAAGTTCAAAAAGAAGGGCTCTTTCGATGGCGTCCCTTACAAGAAGG
CCTGAGCGACGCGGGCCCGGGCGCGCGGGATCTGAAGCGTGAAAAAggca
gaggaaaggaaaaatgaaggatggaaaggaggaagaagaggagcggggag
aggggaggcggatggaCGGCCTGTCCTGACACTTTCCATCCATGCAAACG
CCTTTTTGATGCATCGGGTCATCGAGTCATTCCCGTGCCTGACGGCCACT
CGCACGCCGCATGTCGGTGGAGAGTGCTGCGACAGATTCAgcggcatcct
ccttctttttgtgcGGTGTAGGGAGAAACGAAATGATGGAGGCTTGTCTG
TTTTaatgaaagaaataaaaaaGAAGTATGAGCGAGTTCAGCCGCTCACT
TGTCTCTATCATTGTTC
back to top

Coding sequence (CDS) from alignment at CM002460.1:653206..654922+

>rna3075 ID=rna3075|Name=rna3075|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002460.1:653206..654922+ (Nannochloropsis gaditana)
ATGAGCACCCGCTTACTTCGATCGTGCCAATACACACAGCCAAACAAAAC
CACTAGAACCATGATGTTCTTGCGCTTGTCAATTTTTGCCCTCCTGGCAG
CGTCGGTTTTTGCCTTCGTGCCCCCCGCTCCTCGTGTCATACGGTCTGCC
TCCCAGGTCGTCTTTGCTGAGGCGGAGAAGAATTTCATCACGGAGGCGGA
CAATTGCTTGAACGGGGAATGCTCCATCGACGACGTGAACGATCTCCTCA
TTCAGCTTCGAGTGGAAATCAAGAGCCTGAAAACCAAATTGGCCGAGGTA
GAAGCTTGCGAGCAGCAGCTTACGCAAATGAACGGTGCCCCACTGGCGAA
GGACGCCGTCAGGGACATCATCAAGGCGGTCCTTCGCGCCATGGACGTGG
ATCCCGAGGACTCCAGCTTCCCCCAGATTGTGCGTGCGGCCGGATTCGCG
GGAGAGAAGTTCAAAAAGAAGGGCTCTTTCGATGGCGTCCCTTACAAGAA
GGCCTGAATGAGCACCCGCTTACTTCGATCGTGCCAATACACACAGCCAA
ACAAAACCACTAGAACCATGATGTTCTTGCGCTTGTCAATTTTTGCCCTC
CTGGCAGCGTCGGTTTTTGCCTTCGTGCCCCCCGCTCCTCGTGTCATACG
GTCTGCCTCCCAGGTCGTCTTTGCTGAGGCGGAGAAGAATTTCATCACGG
AGGCGGACAATTGCTTGAACGGGGAATGCTCCATCGACGACGTGAACGAT
CTCCTCATTCAGCTTCGAGTGGAAATCAAGAGCCTGAAAACCAAATTGGC
CGAGGTAGAAGCTTGCGAGCAGCAGCTTACGCAAATGAACGGTGCCCCAC
TGGCGAAGGACGCCGTCAGGGACATCATCAAGGCGGTCCTTCGCGCCATG
GACGTGGATCCCGAGGACTCCAGCTTCCCCCAGATTGTGCGTGCGGCCGG
ATTCGCGGGAGAGAAGTTCAAAAAGAAGGGCTCTTTCGATGGCGTCCCTT
ACAAGAAGGCCTGA
back to top
Synonyms
Publications