EWM27611.1, cds3067 (CDS) Nannochloropsis gaditana

Overview
NameEWM27611.1
Unique Namecds3067
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:653694..653885 +
Alignment locationCM002460.1:654246..654560 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27611.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100069g15.5330.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:653694..653885 +
CM002460.1supercontigCM002460.1:654246..654560 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|585109879|gb|EWM27611.1| (hypothetical protein Naga_100069g15 [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 1.500e-119
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168
            MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA
Sbjct:    1 MSTRLLRSCQYTQPNKTTRTMMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|553181697|ref|XP_005853609.1| (hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526] >gi|422295449|gb|EKU22748.1| hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.36 bits (760), Expect = 1.480e-101
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0
Query:   21 MMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168
            MMFLRLSI ALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA
Sbjct:    1 MMFLRLSILALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 148          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|219112723|ref|XP_002178113.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410998|gb|EEC50927.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 68.9366 bits (167), Expect = 1.236e-11
Identity = 49/154 (31.82%), Postives = 78/154 (50.65%), Query Frame = 0
Query:   21 MMFLRLSIFALLAASVFAFVPPA---PRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDSS--FPQIVRAAGFAGEKFKKKGS-FDGVPYKK 167
            M    L+IFA L     AF P +    R + S S +   E +K  +T+A +C  GECSID+V+DL+  L  + K L  +L EV    + L  +N     K D VR+ ++A+ R      + S   +P + +  G++G+  K   + +D +P KK
Sbjct:    1 MRISSLAIFATLLVGNHAFAPASRLQSRTMTSLSLMSADETDK-IVTQASDCAEGECSIDEVDDLIQILHAQQKELSNRLDEVRVMIKSLEVVNKDDDRKVDQVRETVRAIFRVFQASDKASGNDYPSLTKPMGYSGDVGKGSTTAYDALPPKK 153          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1210521114|dbj|GAX19862.1| (hypothetical protein FisN_1Lh679 [Fistulifera solaris])

HSP 1 Score: 62.7734 bits (151), Expect = 2.546e-9
Identity = 44/154 (28.57%), Postives = 80/154 (51.95%), Query Frame = 0
Query:   21 MMFLRLSIFALLAASVFAFVPPAPRVIRSASQ--VVFAEAEKN-FITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDS--SFPQIVRAAGFAGEKFKKKGS-FDGVPYKK 167
            M  L L+ F  L AS + F    P  +RSA+    +  ++E +  I + ++C   EC IDDV++L+  L+ + K L  +L +V      L  +NG+   K D VR+ ++A+ R   +  + S  ++P + +  G++GE      + +D +P K+
Sbjct:    1 MRILSLAPFFALVASSYGFTTAPP--MRSAATRLSLMTQSESDALIAKVNDCAESECGIDDVSELIYTLQEQQKELSDRLEQVRKMIHVLDHINGSDDRKVDEVRETVRAIFRIFQMGDKASGNNYPSLSKPVGWSGEVGNGPTTAYDALPPKR 152          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1210521113|dbj|GAX19861.1| (hypothetical protein FisN_1Lh680 [Fistulifera solaris])

HSP 1 Score: 62.3882 bits (150), Expect = 2.566e-9
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0
Query:   22 MFLRLSIFALLAASVFAFVPP-----APRVIRSASQVVFAEAEKNFITE-ADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGE-KFKKKGSFDGVPYKK 167
            M  RL+I + + +SV AF P       P+   +A  ++ +  E + I + AD C  GECSID+V DL+ +L+ + K L  +L  V      L  +N     K D VR  +K +LR  D   +  +FP      GFAG+       ++D +P KK
Sbjct:    1 MLSRLAILSFILSSVAAFQPAVRLVITPKCSSTARSILLSNEETSQILQSADECAAGECSIDEVADLVAELKDQEKLLSERLEAVMNAVAHLQHLNAKKERKTDEVRAFVKDMLRVFDTS-KPMAFP-----TGFAGDIGDGPTTAYDALPPKK 148          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|224002314|ref|XP_002290829.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974251|gb|EED92581.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 60.8474 bits (146), Expect = 1.280e-8
Identity = 38/151 (25.17%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   22 MFLRLSIFALLAASVF-AFVPPAPRVIRSASQVVFAEAEKNFI-TEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNG---APLAKDAVRDIIKAVLRAMDVDPEDSS--FPQIVRAAGFAGE-KFKKKGSFDGVP 164
            M  R ++ +LLA  V  AF+     + R++   + +  E ++I +EA+ C  GEC++D+V  L+  L+ +   L  ++ E++   + L  +NG    P+  D V++ ++A+ R   +  + S   +P + +  G++GE +   + ++D +P
Sbjct:    1 MLYRTTLLSLLAIGVTNAFMTAPSAITRTSPLNLMSAKEIDYIMSEAEQCAAGECALDEVESLITNLQSQQSLLSKRIGEIDTLVKDLEHINGRDNRPV--DEVKETVRAIFRVFSLGAKASGNDYPALSKPMGYSGETRGGGQTAYDVLP 149          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1072231039|gb|OEU15772.1| (hypothetical protein FRACYDRAFT_269481 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 59.6918 bits (143), Expect = 2.866e-8
Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = 0
Query:   22 MFLRLSIFALLAASVFAFVPPAPRVI--------RSASQVVFAEAEK-NFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAK-DAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFK-KKGSFDGVPYKK 167
            M  + SI AL+  S  AF    P V+         +A  V+ ++ E  + + +++ C   ECS+D+V+DL++ L+   K L+ +L ++      L  +N     K D VR+ +K +LR  + D +   FPQ     G+AG+  K  + ++D +P KK
Sbjct:    1 MLFKSSILALMLTSAAAFSTMKPLVMIRPAIIASTTAHSVIMSDEETASILKKSEECAASECSLDEVDDLVVTLKDTQKELEVRLEKIMNMISHLQHINEKEERKTDEVREFVKDMLRVFNTD-KPMVFPQ-----GYAGDVGKGSQTAYDVLPPKK 151          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|397584033|gb|EJK52869.1| (hypothetical protein THAOC_27807 [Thalassiosira oceanica])

HSP 1 Score: 57.7658 bits (138), Expect = 2.412e-7
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0
Query:   26 LSIFALLAASVFAFVPPAPRVI-RSASQVVFAEAE-KNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKL 97
            ++I +LLA    AF P  PRV  R+A  +V  EAE    + +A  C  GEC++DDV DL+ +LR + K L  +L
Sbjct:    5 IAILSLLAVGSHAFAPSLPRVHPRTACNLVMTEAEITAILDQAHECAEGECAVDDVEDLIAELRTQQKVLSERL 78          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|397566513|gb|EJK45078.1| (hypothetical protein THAOC_36328 [Thalassiosira oceanica])

HSP 1 Score: 58.5362 bits (140), Expect = 3.246e-7
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0
Query:   26 LSIFALLAASVFAFVPPAPRV-IRSASQVVFAEAE-KNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKL 97
            ++I +LLA    AF P  PRV  R+A  +V  EAE    + +A +C  GEC++DDV DL+ +LR + K L  +L
Sbjct:  109 IAILSLLAVGSHAFAPSLPRVQPRTACNLVMTEAEITAILDQAHDCAEGECAVDDVEDLIAELRTQQKVLSERL 182          
BLAST of EWM27611.1 vs. NCBI_GenBank
Match: gi|1072231038|gb|OEU15771.1| (hypothetical protein FRACYDRAFT_209201 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 56.225 bits (134), Expect = 7.017e-7
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 0
Query:   28 IFALLAASVFAFVPPAPRVIRSASQVVFAEAEKN--FITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGA-PLAKDAVRDIIKAVLRAMDVDPEDS--SFPQIVRAAGFAGEKFKKKGS-FDGVPYKK 167
            IF L+A++      P  RV       + ++AE +  F T  D C+ GECSID+++ L+  L+ + K    +L  V+   + L  +N A   + D VR+ ++A+ R   +  + S  ++P + +  G++G+  K   + +D +P KK
Sbjct:    6 IFCLVASAQAFTTAPTARVFPQTQLNLMSQAETDEAFKTATD-CVEGECSIDEIDGLISLLKDQQKEASERLTSVKTMIKSLDTVNSADDRSVDEVRETVRAIFRVFQLGDKASGNNYPSLSKPMGWSGDVGKGSTTAYDALPPKK 150          
The following BLAST results are available for this feature:
BLAST of EWM27611.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109879|gb|EWM27611.1|1.500e-119100.00hypothetical protein Naga_100069g15 [Nannochlorops... [more]
gi|553181697|ref|XP_005853609.1|1.480e-10199.32hypothetical protein NGA_0252402 [Nannochloropsis ... [more]
gi|219112723|ref|XP_002178113.1|1.236e-1131.82predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210521114|dbj|GAX19862.1|2.546e-928.57hypothetical protein FisN_1Lh679 [Fistulifera sola... [more]
gi|1210521113|dbj|GAX19861.1|2.566e-932.47hypothetical protein FisN_1Lh680 [Fistulifera sola... [more]
gi|224002314|ref|XP_002290829.1|1.280e-825.17predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072231039|gb|OEU15772.1|2.866e-829.30hypothetical protein FRACYDRAFT_269481 [Fragilario... [more]
gi|397584033|gb|EJK52869.1|2.412e-741.89hypothetical protein THAOC_27807 [Thalassiosira oc... [more]
gi|397566513|gb|EJK45078.1|3.246e-741.89hypothetical protein THAOC_36328 [Thalassiosira oc... [more]
gi|1072231038|gb|OEU15771.1|7.017e-728.08hypothetical protein FRACYDRAFT_209201 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3075rna3075Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications