EWM27644.1, cds3033 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|585109914|gb|EWM27644.1| (mediator of rna polymerase ii transcription subunit 31 [Nannochloropsis gaditana]) HSP 1 Score: 383.645 bits (984), Expect = 7.883e-135 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 Query: 1 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT 186 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT Sbjct: 1 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT 186
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|553196005|ref|XP_005856247.1| (mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526] >gi|422292812|gb|EKU20114.1| mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 374.015 bits (959), Expect = 3.481e-130 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 Query: 1 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGG 180 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGG Sbjct: 65 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGG 244
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|831787282|ref|XP_012758379.1| (hypothetical protein SAMD00019534_009580, partial [Acytostelium subglobosum LB1] >gi|735859011|dbj|GAM17783.1| hypothetical protein SAMD00019534_009580, partial [Acytostelium subglobosum LB1]) HSP 1 Score: 123.25 bits (308), Expect = 5.427e-32 Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 0 Query: 24 RFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASK 132 RFT+ELEF+QCL+N YL++LA NRY +D AF+ +L YL YW+QP+YA+F+VYPQ+L L+LL + R+EL Q EF+ +QQ HW++Y NR V N + K Sbjct: 65 RFTMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLSYLLYWKQPEYAKFIVYPQSLYFLDLLQQERFRQELNHAQSTEFIHQQQFYHWQYYRTNRMSAAVQNTDQSDK 173
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|470243666|ref|XP_004355565.1| (putative mediator complex subunit 31 [Dictyostelium fasciculatum] >gi|328868703|gb|EGG17081.1| putative mediator complex subunit 31 [Dictyostelium fasciculatum]) HSP 1 Score: 122.865 bits (307), Expect = 1.223e-31 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0 Query: 21 DETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNR 119 + TRFT+ELEF+QCL+N YL++LA NR+ +D AF+ +L YL YW+QP+Y++F+VYPQ L L+LL R+EL Q EF+ EQQ HW++Y NNR Sbjct: 78 NNTRFTMELEFIQCLSNPRYLNYLAQNRFFQDKAFINYLAYLQYWKQPEYSKFVVYPQCLYFLDLLQHERFRQELTHVQSTEFIHEQQFYHWQYYRNNR 176
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|813142203|ref|XP_012199213.1| (hypothetical protein SPRG_05221 [Saprolegnia parasitica CBS 223.65] >gi|641536135|gb|KDO30031.1| hypothetical protein SPRG_05221 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 119.398 bits (298), Expect = 1.681e-31 Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0 Query: 17 ELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKE 133 ELP D+ RF +ELEF+QCLA+ YL+ LA+NRY EDP FL +L YL YW++P+YA+++ YP AL L+LL + R+ + +++ + QQ LHW + NNRQ+ P +A+ E Sbjct: 2 ELPTDDIRFQIELEFIQCLASPSYLNHLAINRYFEDPVFLNYLTYLKYWKKPEYAKYINYPHALTFLDLLDDEKFRQMIAHDSFRDMVHAQQGLHWLHFLNNRQKEETA-PVDATME 117
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|669150300|ref|XP_008610712.1| (hypothetical protein SDRG_06693 [Saprolegnia diclina VS20] >gi|530737708|gb|EQC35950.1| hypothetical protein SDRG_06693 [Saprolegnia diclina VS20]) HSP 1 Score: 119.398 bits (298), Expect = 1.699e-31 Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0 Query: 17 ELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKE 133 ELP D+ RF +ELEF+QCLA+ YL+ LA+NRY EDP FL +L YL YW++P+YA+++ YP AL L+LL + R+ + +++ + QQ LHW + NNRQ+ P +A+ E Sbjct: 2 ELPTDDIRFQIELEFIQCLASPSYLNHLAINRYFEDPVFLNYLTYLKYWKKPEYAKYINYPHALTFLDLLDDEKFRQMIAHDSFRDMVHAQQGLHWLHFLNNRQKE-GATPVDATME 117
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|698791944|ref|XP_009829004.1| (hypothetical protein H257_05735 [Aphanomyces astaci] >gi|574115661|gb|ETV81146.1| hypothetical protein H257_05735 [Aphanomyces astaci]) HSP 1 Score: 117.472 bits (293), Expect = 1.020e-30 Identity = 50/105 (47.62%), Postives = 77/105 (73.33%), Query Frame = 0 Query: 17 ELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQR 121 E+P D+ RF +ELEF+QCLA+ YL+ LA+N+Y E+PAFL +L+YL YW++P+YAR++ YP AL L+LL + R+ + +++ + +QQ LHW Y+NNR + Sbjct: 2 EVPTDDIRFQIELEFIQCLASPSYLNHLAINQYFENPAFLNYLQYLKYWKKPEYARYVNYPHALTFLDLLDDEKFRQMIAHDNFRDLVHQQQGLHWMHYYNNRVK 106
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|1214710167|gb|OWZ21282.1| (Mediator of RNA polymerase II transcription subunit 31 [Phytophthora megakarya]) HSP 1 Score: 117.087 bits (292), Expect = 1.422e-30 Identity = 48/105 (45.71%), Postives = 75/105 (71.43%), Query Frame = 0 Query: 15 RYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNR 119 + E+P ++ RF +ELEF+QCLA+ YL++LA+NRY E+PAF+ +L+YL YW+QP+YA+++VYP LA L++L R+ + R + + QQ HW+ + NNR Sbjct: 3 KVEVPSNDIRFQMELEFIQCLASPAYLNFLAINRYFENPAFMNYLQYLKYWKQPQYAKYIVYPHCLAFLDMLDDERFRQMIAREDFMTLVHGQQFYHWQTFLNNR 107
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|66809215|ref|XP_638330.1| (hypothetical protein DDB_G0285221 [Dictyostelium discoideum AX4] >gi|74853923|sp|Q54NI7.1|MED31_DICDI RecName: Full=Putative mediator of RNA polymerase II transcription subunit 31; AltName: Full=Putative mediator complex subunit 31 >gi|60466774|gb|EAL64822.1| hypothetical protein DDB_G0285221 [Dictyostelium discoideum AX4]) HSP 1 Score: 118.627 bits (296), Expect = 1.958e-30 Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 0 Query: 24 RFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNR 119 RF +ELEF+QCL+N YL++LA NRY +D AF+ +L YL YW++P+YA+F+VYPQ+L L+LL R+EL Q +F+ EQQ HW++Y NNR Sbjct: 55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNR 150
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|225454890|ref|XP_002279047.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Vitis vinifera] >gi|297737389|emb|CBI26590.3| unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 119.013 bits (297), Expect = 2.049e-30 Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 0 Query: 16 YELPDD-ETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNP 127 Y+ PDD RF LELEFVQCLAN Y+H+LA NRY ED AF+ +L+YL YW+QP+Y +F++YP L LELL A R + KE QQ +W+ Y NNR + ++ P Sbjct: 21 YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNNRLKHILPKP 133 The following BLAST results are available for this feature:
BLAST of EWM27644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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