EWM27644.1, cds3033 (CDS) Nannochloropsis gaditana

Overview
NameEWM27644.1
Unique Namecds3033
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:552288..552848 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27644.1
Productmediator of rna polymerase ii transcription subunit 31
Orig transcript idgnl|cribi|Naga_100059g20.8049.mrna
Genemed31
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:552288..552848 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
Homology
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|585109914|gb|EWM27644.1| (mediator of rna polymerase ii transcription subunit 31 [Nannochloropsis gaditana])

HSP 1 Score: 383.645 bits (984), Expect = 7.883e-135
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:    1 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT 186
            MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT
Sbjct:    1 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT 186          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|553196005|ref|XP_005856247.1| (mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526] >gi|422292812|gb|EKU20114.1| mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 374.015 bits (959), Expect = 3.481e-130
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGG 180
            MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGG
Sbjct:   65 MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPVQAEPEAEQLKLGSGNGEGRDVTEVKLVEGG 244          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|831787282|ref|XP_012758379.1| (hypothetical protein SAMD00019534_009580, partial [Acytostelium subglobosum LB1] >gi|735859011|dbj|GAM17783.1| hypothetical protein SAMD00019534_009580, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 123.25 bits (308), Expect = 5.427e-32
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 0
Query:   24 RFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASK 132
            RFT+ELEF+QCL+N  YL++LA NRY +D AF+ +L YL YW+QP+YA+F+VYPQ+L  L+LL +   R+EL   Q  EF+ +QQ  HW++Y  NR    V N   + K
Sbjct:   65 RFTMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLSYLLYWKQPEYAKFIVYPQSLYFLDLLQQERFRQELNHAQSTEFIHQQQFYHWQYYRTNRMSAAVQNTDQSDK 173          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|470243666|ref|XP_004355565.1| (putative mediator complex subunit 31 [Dictyostelium fasciculatum] >gi|328868703|gb|EGG17081.1| putative mediator complex subunit 31 [Dictyostelium fasciculatum])

HSP 1 Score: 122.865 bits (307), Expect = 1.223e-31
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   21 DETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNR 119
            + TRFT+ELEF+QCL+N  YL++LA NR+ +D AF+ +L YL YW+QP+Y++F+VYPQ L  L+LL     R+EL   Q  EF+ EQQ  HW++Y NNR
Sbjct:   78 NNTRFTMELEFIQCLSNPRYLNYLAQNRFFQDKAFINYLAYLQYWKQPEYSKFVVYPQCLYFLDLLQHERFRQELTHVQSTEFIHEQQFYHWQYYRNNR 176          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|813142203|ref|XP_012199213.1| (hypothetical protein SPRG_05221 [Saprolegnia parasitica CBS 223.65] >gi|641536135|gb|KDO30031.1| hypothetical protein SPRG_05221 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.398 bits (298), Expect = 1.681e-31
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0
Query:   17 ELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKE 133
            ELP D+ RF +ELEF+QCLA+  YL+ LA+NRY EDP FL +L YL YW++P+YA+++ YP AL  L+LL   + R+ +    +++ +  QQ LHW  + NNRQ+     P +A+ E
Sbjct:    2 ELPTDDIRFQIELEFIQCLASPSYLNHLAINRYFEDPVFLNYLTYLKYWKKPEYAKYINYPHALTFLDLLDDEKFRQMIAHDSFRDMVHAQQGLHWLHFLNNRQKEETA-PVDATME 117          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|669150300|ref|XP_008610712.1| (hypothetical protein SDRG_06693 [Saprolegnia diclina VS20] >gi|530737708|gb|EQC35950.1| hypothetical protein SDRG_06693 [Saprolegnia diclina VS20])

HSP 1 Score: 119.398 bits (298), Expect = 1.699e-31
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0
Query:   17 ELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPPNASKE 133
            ELP D+ RF +ELEF+QCLA+  YL+ LA+NRY EDP FL +L YL YW++P+YA+++ YP AL  L+LL   + R+ +    +++ +  QQ LHW  + NNRQ+     P +A+ E
Sbjct:    2 ELPTDDIRFQIELEFIQCLASPSYLNHLAINRYFEDPVFLNYLTYLKYWKKPEYAKYINYPHALTFLDLLDDEKFRQMIAHDSFRDMVHAQQGLHWLHFLNNRQKE-GATPVDATME 117          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|698791944|ref|XP_009829004.1| (hypothetical protein H257_05735 [Aphanomyces astaci] >gi|574115661|gb|ETV81146.1| hypothetical protein H257_05735 [Aphanomyces astaci])

HSP 1 Score: 117.472 bits (293), Expect = 1.020e-30
Identity = 50/105 (47.62%), Postives = 77/105 (73.33%), Query Frame = 0
Query:   17 ELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQR 121
            E+P D+ RF +ELEF+QCLA+  YL+ LA+N+Y E+PAFL +L+YL YW++P+YAR++ YP AL  L+LL   + R+ +    +++ + +QQ LHW  Y+NNR +
Sbjct:    2 EVPTDDIRFQIELEFIQCLASPSYLNHLAINQYFENPAFLNYLQYLKYWKKPEYARYVNYPHALTFLDLLDDEKFRQMIAHDNFRDLVHQQQGLHWMHYYNNRVK 106          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|1214710167|gb|OWZ21282.1| (Mediator of RNA polymerase II transcription subunit 31 [Phytophthora megakarya])

HSP 1 Score: 117.087 bits (292), Expect = 1.422e-30
Identity = 48/105 (45.71%), Postives = 75/105 (71.43%), Query Frame = 0
Query:   15 RYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNR 119
            + E+P ++ RF +ELEF+QCLA+  YL++LA+NRY E+PAF+ +L+YL YW+QP+YA+++VYP  LA L++L     R+ + R  +   +  QQ  HW+ + NNR
Sbjct:    3 KVEVPSNDIRFQMELEFIQCLASPAYLNFLAINRYFENPAFMNYLQYLKYWKQPQYAKYIVYPHCLAFLDMLDDERFRQMIAREDFMTLVHGQQFYHWQTFLNNR 107          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|66809215|ref|XP_638330.1| (hypothetical protein DDB_G0285221 [Dictyostelium discoideum AX4] >gi|74853923|sp|Q54NI7.1|MED31_DICDI RecName: Full=Putative mediator of RNA polymerase II transcription subunit 31; AltName: Full=Putative mediator complex subunit 31 >gi|60466774|gb|EAL64822.1| hypothetical protein DDB_G0285221 [Dictyostelium discoideum AX4])

HSP 1 Score: 118.627 bits (296), Expect = 1.958e-30
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 0
Query:   24 RFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNR 119
            RF +ELEF+QCL+N  YL++LA NRY +D AF+ +L YL YW++P+YA+F+VYPQ+L  L+LL     R+EL   Q  +F+ EQQ  HW++Y NNR
Sbjct:   55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNR 150          
BLAST of EWM27644.1 vs. NCBI_GenBank
Match: gi|225454890|ref|XP_002279047.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Vitis vinifera] >gi|297737389|emb|CBI26590.3| unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 119.013 bits (297), Expect = 2.049e-30
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 0
Query:   16 YELPDD-ETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNP 127
            Y+ PDD   RF LELEFVQCLAN  Y+H+LA NRY ED AF+ +L+YL YW+QP+Y +F++YP  L  LELL  A  R  +     KE    QQ  +W+ Y NNR + ++  P
Sbjct:   21 YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNNRLKHILPKP 133          
The following BLAST results are available for this feature:
BLAST of EWM27644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109914|gb|EWM27644.1|7.883e-135100.00mediator of rna polymerase ii transcription subuni... [more]
gi|553196005|ref|XP_005856247.1|3.481e-130100.00mediator of rna polymerase ii transcription subuni... [more]
gi|831787282|ref|XP_012758379.1|5.427e-3250.46hypothetical protein SAMD00019534_009580, partial ... [more]
gi|470243666|ref|XP_004355565.1|1.223e-3153.54putative mediator complex subunit 31 [Dictyosteliu... [more]
gi|813142203|ref|XP_012199213.1|1.681e-3146.15hypothetical protein SPRG_05221 [Saprolegnia paras... [more]
gi|669150300|ref|XP_008610712.1|1.699e-3146.15hypothetical protein SDRG_06693 [Saprolegnia dicli... [more]
gi|698791944|ref|XP_009829004.1|1.020e-3047.62hypothetical protein H257_05735 [Aphanomyces astac... [more]
gi|1214710167|gb|OWZ21282.1|1.422e-3045.71Mediator of RNA polymerase II transcription subuni... [more]
gi|66809215|ref|XP_638330.1|1.958e-3053.13hypothetical protein DDB_G0285221 [Dictyostelium d... [more]
gi|225454890|ref|XP_002279047.1|2.049e-3049.56PREDICTED: mediator of RNA polymerase II transcrip... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3041rna3041Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications