rna3041, rna3041 (mRNA) Nannochloropsis gaditana

Overview
Namerna3041
Unique Namerna3041
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1799
Alignment locationCM002460.1:551875..552865 +

Link to JBrowse

Properties
Property NameValue
Productmediator of rna polymerase ii transcription subunit 31
Orig transcript idgnl|cribi|Naga_100059g20.8049.mrna
Orig protein idgnl|cribi|Naga_100059g20.8049
Genemed31
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:551875..552865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
med31gene2919Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3041rna3041-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27644.1cds3033Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3041 ID=rna3041|Name=rna3041|organism=Nannochloropsis gaditana|type=mRNA|length=1799bp
TGTCGCATGCATGATCTGTCGGAATAATCATTGGAATATGCTGTTTTGTG
TTGTCAAAGCTGCAGGTTGTCCAAAGAAGGATGCGACATGGGCCACTTTG
CTTGACATTCAACCCAAACAAAGCGGGCATGCAATATGTCGTCACACACC
CCGCGAACAAGCATGGTGCTCGGGATGAGACCCAATATCCTTCTTTTCCA
CAACATGGTCAAGCGATACTTGCAAGGCATGCACCTCTCAGACGCCATCA
CGGAAATATATGTTCTAGAGCAGCGAAGACTAACTATGCACCCCTCTTGA
CGGTACATGCTCAGGTCCAAGGGCAAGATCTACGCGTTTAGTACTTACGC
ATGGCCTCTTCTGGAAGCCTGCGGATGGCTTTGGGTCATCGAGTGGTGGC
AAAGAAATATAACCATAATATTGCAACTGCTGCGGAAGACCCAGTGAGTC
CTGAGGCAATGCGTGTTCGAGAGGGCACAGGGCCAGGAGGTCATCCTCTG
CCCAGGCATCAGCGACGACGCAGCAACCTCACGGATGAGGCTAGCTCGGC
TCTTGACGAGGAGGAGGGCACTCTGGAGGGCGCCGCCGCGGCGCTGGAGA
TGGAGGACGAGTCGTCGCGAAAGGTCTCGACACCAAGCGGAATGGCAACG
AGAGAGCTAGGAGACGGACATCCAAAGACGCCCTCCGGTCCATTGTCCTT
CACTTGCTGCCCCAATGCCACTTCCTCTCCCTCTTGCTCTTCCTTTGCGC
CTGAACACCCCCGTCGGGGCCCCGGCCCCGCAAACAGCCGTTCCACCGTC
CAGCCTGAAGACTTTCGAGTGTCTCCATCCCTATTGGAGATGCCCACGTT
CCCTGATGACACCGAGAAATCGTCAATCCTGGAGCAGCACGTGACGCGAG
GTACCCTCGGAGAAGAAGGAGCAGGTACCTCGGAAAGTCCCTCTCCCTCC
CAGCGCGCCGCCCTGTCCAGCTTGTATGGCCTACAAGCTGCCACGTCCAC
GCTGGCGGAGGAAAAAGGAGAAGAAGACGAGGGCCAGTTGGTGCAGGGGA
GAGAGGCCCATGTGGGAGAAGTAAGACAGGCGGACGAAGGAGCCGAGGGC
GTCAGCGCGTTTGTGGAGCAATTTCTTGCCCGGCATTACATCTCCGACCG
ACCAGAATTGAAGCGTTACGACTCGGCAGATGCTGCATTAGCGGTGGCTC
GCGGCGGAGAGAAAGGAGCGAGGTCTGGCGCGGGAAGCCACTCGCGCCAG
TCCTCGGCATTAACTATCTCAAGCCATCTGAAAAGCGAGCTTCCCTTCGA
AGATGCGGTTCCTCCCCCCGCACCGTCCGTCTTGCAGGCGCCCCCAAGGC
TCCATGGTCGGCGCCGGTCAAGCGAAGGCTTCATTGAGATCCAGGTCGCC
AATGCTCCGTCCTCCGGCCCTGCCTGCTCCCAGGAGGAGGCCCCCGAGGG
ATGGGAGACGGGCCACAGCCAAGGACTGAGCACGGGGGCAATCGAGGAGG
AAGAGGAGGAGAAGAGGCCGCGTCAGGCGCTTCCACAGTTCTCTCGCTTC
GATTCGGGAGACTACTTTATGCAGAAAGACGCGAGAGCCCGGGCGAATGA
GCACCCGGCCCTCGAGAAAAGCGGGGCCGCAGAGCCAGGGGGCACTTGTA
TGAAAGAGAGAAATAGAAAGAATCCCGAAAGCGGGAAGGCTATCAGCCTA
CTGGAGCGAAGCGCAGAGATGCATGTCAAGATTGATATAGGCACAGGTGG
TCAGGGCGCTCGCCTGTGCGCATCGTATCGTAGATTCGCTCATTGTTAA
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protein sequence of rna3041

>rna3041-protein ID=rna3041-protein|Name=rna3041|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MHNSRTLPWQIHHHRYELPDDETRFTLELEFVQCLANADYLHWLALNRYL
EDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQY
KEFLREQQLLHWRFYFNNRQRRLVVNPPNASKETLKAGGTWTTVLNERPV
QAEPEAEQLKLGSGNGEGRDVTEVKLVEGGMQNTTT
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mRNA from alignment at CM002460.1:551875..552865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3041 ID=rna3041|Name=rna3041|organism=Nannochloropsis gaditana|type=mRNA|length=991bp|location=Sequence derived from alignment at CM002460.1:551875..552865+ (Nannochloropsis gaditana)
GGGATAGCAACAAAGGAAAACAGATCACTACAACCTTAAGCGATGCATGA
AAGGGCCCTTAACATCTTGTAAGGGACCCCACATGGCACGTATCCCCCCG
CGGCAAGCTGCCCGACAGCATTTCTCACAAATTTGGCGGCAGGAAAGTGC
GTGGAGATGCTCCCAACGGACGTCGCCAGTGGCGCCATGGACGGCGAGAT
TGCCGCAAGCGGCGTGAAAGGGCCTCTGACAGGAAGGATAGGTGCGATTT
GCACGCAGACTTGGCTGGGATAGTCCATTCATTGGGTTCCTGGCACTCTT
TGGTGCTACTCACTGCTTGCTGGTCTCTCGAAGTTTTAAAGCTGCCACAT
GCGCCCACCGTACATCCTTCCTTGTGTGTTGATACaactacctcctcctt
cgcaaAGTGCAGCATGCACAATTCAAGAACTCTACCATGGCAGATACATC
ACCATCGATATGAGCTTCCTGATGATGAAACGCGCTTTACTTTGGAGCTC
GAGTTTGTGCAGTGCCTGGCGAACGCAGATTACTTGCACTGGCTGGCGCT
CAACAGGTACCTGGAGGACCCTGCCTTTTTGGCTTTTTTGCGGTATCTAC
ACTACTGGCGACAGCCAAAATATGCGAGATTTCTAGTCTATCCCCAAGCA
TTAGCCATGCTGGAATTATTGGGTCGAGCAGAGGTGCGGCGCGAGCTGGG
TCGTGGGCAGTACAAAGAGTTCTTGCGGGAGCAACAACTGCTACATTGGC
GATTTTACTTTAATAATCGGCAACGACGGCTCGTGGTCAACCCCCCCAAC
GCATCGAAAGAAACACTGAAAGCCGGTGGTACATGGACGACGGTGCTGAA
TGAGCGACCAGTCCAGGCTGAGCCTGAAGCAGAGCAGTTAAAATTAGGGT
CTgggaatggggaaggaagagatgtaACGGAGGTGAAGTTGGTCGAGGGA
GGTATGCAGAATACAACAACATGAAGCTGACACCTCAGACA
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Coding sequence (CDS) from alignment at CM002460.1:551875..552865+

>rna3041 ID=rna3041|Name=rna3041|organism=Nannochloropsis gaditana|type=CDS|length=561bp|location=Sequence derived from alignment at CM002460.1:551875..552865+ (Nannochloropsis gaditana)
ATGCACAATTCAAGAACTCTACCATGGCAGATACATCACCATCGATATGA
GCTTCCTGATGATGAAACGCGCTTTACTTTGGAGCTCGAGTTTGTGCAGT
GCCTGGCGAACGCAGATTACTTGCACTGGCTGGCGCTCAACAGGTACCTG
GAGGACCCTGCCTTTTTGGCTTTTTTGCGGTATCTACACTACTGGCGACA
GCCAAAATATGCGAGATTTCTAGTCTATCCCCAAGCATTAGCCATGCTGG
AATTATTGGGTCGAGCAGAGGTGCGGCGCGAGCTGGGTCGTGGGCAGTAC
AAAGAGTTCTTGCGGGAGCAACAACTGCTACATTGGCGATTTTACTTTAA
TAATCGGCAACGACGGCTCGTGGTCAACCCCCCCAACGCATCGAAAGAAA
CACTGAAAGCCGGTGGTACATGGACGACGGTGCTGAATGAGCGACCAGTC
CAGGCTGAGCCTGAAGCAGAGCAGTTAAAATTAGGGTCTgggaatgggga
aggaagagatgtaACGGAGGTGAAGTTGGTCGAGGGAGGTATGCAGAATA
CAACAACATGA
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Synonyms
Publications