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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100059g11.8053.mrna |
| Orig protein id | gnl|cribi|Naga_100059g11.8053 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:529907..531448 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3032 ID=rna3032|Name=rna3032|organism=Nannochloropsis gaditana|type=mRNA|length=1265bp
ACGTGCCTATGCCTGGTCGTGCGCGAGGACTTGCACCCTCTTGTGGTGTC
CACGCTTCAATCCCTTGCACTTACATGAATCTAAATACAAATGGCAGGTT
TTCACTCTACTGTGCCAACTTGTCACCGAATTTTCTTGACTCTATACTTC
AATTCAAAAGAGGACTAAGCGGAGACCTCAACACAGACACAAAGAGAGAG
GCCGACGGGAGCATAAAGTGGACAGGGAGCAAGCAACGTGTCGCCCTTAC
CATGCAAAACAACGCGCATCAACGAGTATCTTTGTCTCATAGTTTTTTGA
AGCGCATGAAGAAAAATCAGACCACAGTATGCGGTCGCTTTTTGGTGATG
TTACTAAGCTTTGTCGCAGCGAGCTCAGACCCCGAAATTAAGCGCACCTC
CGCCCCAATCCTCCTGCTCGATCTCAATCTTCCCTCTATCACTCCCGATG
AGTATCTTGAATCCTTCTGGCATGATACAAGTTTCTATGAAAATTTTCTT
AAAGAGTCCGGCGATCGTGATGTGAGCATTCAACCCTGGTCTCCGGCCCA
GCCCTCTACACATAGCGTGGCGCACCACAAAATGACGCACAGGACTCGCA
CAATCGTGACAAAACACCCAGTGAAGGCAAAGATGCCTGGGATACCGAGC
CATGTTCGGAGTACCAAAACCCAGGTCTTATCTGAGGAAAAGATCAATAG
GAATGGCTCCGTTATCATCCGGGTTCACGAGACAAATGAGGTTGAGGGAG
TGCCATTCGCAGATCGCTTCCTTGTCGCGGTAGTGTGGACTGCAACCTGG
ACCGACCACACGAGCGAAGAAGAGCGGAAATTTAACCCGAAAACAGTGCG
ACTGACAGTTCACCAGCATGTGATATTTCGTCAATCTTTCTTACTGGAGA
AAATGGTGGAGAGAGATTCAAGAAAGGAGACGCTCGACACAGTGAAATTG
TGGAGCACGCTAGTCCATCAGCAGGTGATGGCGTCAGAAGGTGCGCCGTC
ATCAACACCCCTGCAGGGAGGTGACGAAGGACAAGAGGCGAAAGCCAGGA
GAGATCATGAATGTATCTTAATGGCGGTGACACGGAAGGTGCTGGTGACG
GGTGCTGCGGCAGTCTTCATTCTTTTAGTGGGCAAAACCGCTTTTTATCT
TCCCGACGAACTCGCCAGACTGGCGCGTTGTCGTCGGCAGAAACCGAAAA
ATCAATGAGTTGTAAAAAATCAGCAAGCACACTTTGTACATGGCAAAGAA
AAATCGACGCAATGA back to topprotein sequence of rna3032 >rna3032-protein ID=rna3032-protein|Name=rna3032|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MKEDLLGHNEKYPGFISRTNFMLQHVTSTLCQSKALIIFFYPSQQIEGDR
DVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTK
TQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSE
EERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVH
QQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVF
ILLVGKTAFYLPDELARLARCRRQKPKNQ back to topmRNA from alignment at CM002460.1:529907..531448- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3032 ID=rna3032|Name=rna3032|organism=Nannochloropsis gaditana|type=mRNA|length=1542bp|location=Sequence derived from alignment at CM002460.1:529907..531448- (Nannochloropsis gaditana)
ACGTGCCTATGCCTGGTCGTGCGCGAGGACTTGCACCCTCTTGTGGTGTC
CACGCTTCAATCCCTTGCACTTACATGAATCTAAATACAAATGGCAGGTT
TTCACTCTACTGTGCCAACTTGTCACCGAATTTTCTTGACTCTATACTTC
AATTCAAAAGAGGACTAAGCGGAGACCTCAACACAGACACAAAGAGAGAG
GCCGACGGGAGCATAAAGTGGACAGGGAGCAAGCAACGTGTCGCCCTTAC
CATGCAAAACAACGCGCATCAACGAGTATCTTTGTCTCATAGTTTTTTGA
AGCGCATGAAGAAAAATCAGACCACAGTATGCGGTCGCTTTTTGGTGATG
TTACTAAGCTTTGTCGCAGCGAGCTCAGACCCCGAAATTAAGCGCACCTC
CGCCCCAATCCTCCTGCTCGATCTCAATCTTCCCTCTATCACTCCCGATG
AGTATCTTGAATCCTTCTGGCATGATACAAGTTTCTATGAAAATTTTCTT
AAAGAGTCCGGTACGTTCACGGAAATACTTGATTGCAGCGCAGAGAGGCG
TCTGTCTTGTGCAACCGATACCTTTTCTTCGTTGTATCAGGCATACGTAT
GTAACATAGCCAGAACATACGTATATCTTAACGAGTTGATGCGTAATGAA
GGAGGATCTTCTGGGTCATAACGAGAAATACCCTGGGTTTATATCTCGAA
CAAATTTTATGTTACAACACGTTACCTCGACACTTTGTCAATCGAAGGCA
TTAATCATCTTCTTTTATCCCTCACAACAAATTGAAGGCGATCGTGATGT
GAGCATTCAACCCTGGTCTCCGGCCCAGCCCTCTACACATAGCGTGGCGC
ACCACAAAATGACGCACAGGACTCGCACAATCGTGACAAAACACCCAGTG
AAGGCAAAGATGCCTGGGATACCGAGCCATGTTCGGAGTACCAAAACCCA
GGTCTTATCTGAGGAAAAGATCAATAGGAATGGCTCCGTTATCATCCGGG
TTCACGAGACAAATGAGGTTGAGGGAGTGCCATTCGCAGATCGCTTCCTT
GTCGCGGTAGTGTGGACTGCAACCTGGACCGACCACACGAGCGAAGAAGA
GCGGAAATTTAACCCGAAAACAGTGCGACTGACAGTTCACCAGCATGTGA
TATTTCGTCAATCTTTCTTACTGGAGAAAATGGTGGAGAGAGATTCAAGA
AAGGAGACGCTCGACACAGTGAAATTGTGGAGCACGCTAGTCCATCAGCA
GGTGATGGCGTCAGAAGGTGCGCCGTCATCAACACCCCTGCAGGGAGGTG
ACGAAGGACAAGAGGCGAAAGCCAGGAGAGATCATGAATGTATCTTAATG
GCGGTGACACGGAAGGTGCTGGTGACGGGTGCTGCGGCAGTCTTCATTCT
TTTAGTGGGCAAAACCGCTTTTTATCTTCCCGACGAACTCGCCAGACTGG
CGCGTTGTCGTCGGCAGAAACCGAAAAATCAATGAGTTGTAAAAAATCAG
CAAGCACACTTTGTACATGGCAAAGAAAAATCGACGCAATGA back to topCoding sequence (CDS) from alignment at CM002460.1:529907..531448- >rna3032 ID=rna3032|Name=rna3032|organism=Nannochloropsis gaditana|type=CDS|length=840bp|location=Sequence derived from alignment at CM002460.1:529907..531448- (Nannochloropsis gaditana)
ATGAAGGAGGATCTTCTGGGTCATAACGAGAAATACCCTGGGTTTATATC
TCGAACAAATTTTATGTTACAACACGTTACCTCGACACTTTGTCAATCGA
AGGCATTAATCATCTTCTTTTATCCCTCACAACAAATTGAAGGCGATCGT
GATGTGAGCATTCAACCCTGGTCTCCGGCCCAGCCCTCTACACATAGCGT
GGCGCACCACAAAATGACGCACAGGACTCGCACAATCGTGACAAAACACC
CAGTGAAGGCAAAGATGCCTGGGATACCGAGCCATGTTCGGAGTACCAAA
ACCCAGGTCTTATCTGAGGAAAAGATCAATAGGAATGGCTCCGTTATCAT
CCGGGTTCACGAGACAAATGAGGTTGAGGGAGTGCCATTCGCAGATCGCT
TCCTTGTCGCGGTAGTGTGGACTGCAACCTGGACCGACCACACGAGCGAA
GAAGAGCGGAAATTTAACCCGAAAACAGTGCGACTGACAGTTCACCAGCA
TGTGATATTTCGTCAATCTTTCTTACTGGAGAAAATGGTGGAGAGAGATT
CAAGAAAGGAGACGCTCGACACAGTGAAATTGTGGAGCACGCTAGTCCAT
CAGCAGGTGATGGCGTCAGAAGGTGCGCCGTCATCAACACCCCTGCAGGG
AGGTGACGAAGGACAAGAGGCGAAAGCCAGGAGAGATCATGAATGTATCT
TAATGGCGGTGACACGGAAGGTGCTGGTGACGGGTGCTGCGGCAGTCTTC
ATTCTTTTAGTGGGCAAAACCGCTTTTTATCTTCCCGACGAACTCGCCAG
ACTGGCGCGTTGTCGTCGGCAGAAACCGAAAAATCAATGA back to top
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