EWM27648.1, cds3024 (CDS) Nannochloropsis gaditana

Overview
NameEWM27648.1
Unique Namecds3024
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:529964..530803 -

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Properties
Property NameValue
Protein idEWM27648.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100059g11.8053.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:529964..530803 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27648.1 vs. NCBI_GenBank
Match: gi|585109918|gb|EWM27648.1| (hypothetical protein Naga_100059g11 [Nannochloropsis gaditana])

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0 
Query:    1 MKEDLLGHNEKYPGFISRTNFMLQHVTSTLCQSKALIIFFYPSQQIEGDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ 279
            MKEDLLGHNEKYPGFISRTNFMLQHVTSTLCQSKALIIFFYPSQQIEGDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ
Sbjct:    1 MKEDLLGHNEKYPGFISRTNFMLQHVTSTLCQSKALIIFFYPSQQIEGDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ 279
[Close]
BLAST of EWM27648.1 vs. NCBI_GenBank
Match: gi|585109917|gb|EWM27647.1| (hypothetical protein Naga_100059g11 [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 1.799e-168
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 
Query:   48 GDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ 279
            GDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ
Sbjct:  168 GDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTSEEERKFNPKTVRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVMASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELARLARCRRQKPKNQ 399
The following BLAST results are available for this feature:
BLAST of EWM27648.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109918|gb|EWM27648.1|0.000e+0100.00hypothetical protein Naga_100059g11 [Nannochlorops... [more]
gi|585109917|gb|EWM27647.1|1.799e-168100.00hypothetical protein Naga_100059g11 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3032rna3032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications