EWM27660.1, cds3013 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|585109931|gb|EWM27660.1| (hypothetical protein Naga_100125g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 789.26 bits (2037), Expect = 0.000e+0 Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0 Query: 1 APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQGDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALYGSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPSTAPVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNGGGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW 389 APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQGDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALYGSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPSTAPVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNGGGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW Sbjct: 1 APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQGDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALYGSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPSTAPVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNGGGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW 389
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|397630703|gb|EJK69876.1| (hypothetical protein THAOC_08826 [Thalassiosira oceanica]) HSP 1 Score: 79.337 bits (194), Expect = 2.128e-12 Identity = 66/202 (32.67%), Postives = 98/202 (48.51%), Query Frame = 0 Query: 32 DDLLVEIITPGL-----DASFDCQGDVFRLPVSGCAVPDPLPRVSL--LHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNR-AETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVE 225 ++ ++E +T L SF+C GD + C + LP S+ L N V RGL + +VG + +T+ L+C S + F+ F+ +G A G ++ G ESTL AA+ +L D P + A TPPIS+ L+ VE+IIA GV C V S+ L R S AD+EG + L +R V+ Sbjct: 396 NETVIESVTQQLLQRSGSYSFNC-GDFPLWSIGDC---ESLPSASIYPLLNYRVSRGLRYSKEVGLGHFFTTSTLDLMCGGSNS--IESNYTCQTVGFASAFNATTGLALGSEE--CGLESTLTAAIALDMLIPDKPFKYASTPPISNSSVIFLIAVEMIIALGVGVACVVLSVHLMRRAS-ADEEG----DAFLELRQQVD 584
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|1173953058|gb|OQS00626.1| (hypothetical protein ACHHYP_03242 [Achlya hypogyna]) HSP 1 Score: 72.0182 bits (175), Expect = 5.728e-10 Identity = 56/158 (35.44%), Postives = 78/158 (49.37%), Query Frame = 0 Query: 45 ASFDCQGDVFRLPVSGCA--VPDPLPRVSLL-HNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADA--PNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSL 197 A+F+ D F + V C P P PRV+LL HN +V RG N +G + LL T AL+ +S+D AY F FD SG G STLAAA+ + DA P +TPPI+ + ++ +EL++A +GC VFS+ Sbjct: 439 ATFNFFCDYFPMAVFPCGPQAPAP-PRVTLLVHNYLVYRGFLKNSFLGIAQVLLQKTFALL--SSVD----------AYHFCDIFDATSGAPMATTT---GLSSTLAAAVAINMGLPDATQPPSPDTPPINRKMILIVMCIELVVAMGVALGCVVFSI 580
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|325180422|emb|CCA14827.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 65.4698 bits (158), Expect = 7.809e-8 Identity = 58/187 (31.02%), Postives = 84/187 (44.92%), Query Frame = 0 Query: 30 RLDDLLVEIITPGLDASFDCQGDVFRLPVSGC-----AVPDPLPRVSLLH-NLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVW-ILLHADAP--NRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRAD 207 R + + + P F C D F +P C + DP +LLH N ++QR L N G +L N T ++C + A S FD S D +G +S+LAAA++ ILL A AP N A PP+ H + ++ +EL +AF +GCFVFS+ RA+ Sbjct: 446 RKNSIFSHFLAPSGTFGFLC--DQFPIPYYSCESSTSTLTDP---TTLLHYNYLMQRSLTENNFYGVAEFLRNRTALMICESDERMNAT----------SIGFDTTSAAGMNFIDD-YGVDSSLAAAMILNILLPAVAPFPNPA-VPPVDHRMLTVIMFIELTVAFGVALGCFVFSVYFVANRPRAN 615
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|299471992|emb|CBN80075.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 62.7734 bits (151), Expect = 5.437e-7 Identity = 55/162 (33.95%), Postives = 76/162 (46.91%), Query Frame = 0 Query: 69 RVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPA---------------------YRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRA-ETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADK 208 RV +LHN + RGL G + WL N+T +L+ PP +RF R FD SG + G S+LAAA +LL DAP+ + PPI+H F LV VEL +FA GV C +F++SL R+L++ D+ Sbjct: 511 RVWVLHNFLAVRGLRRLSLNGLSVWLANSTSSLL--------GNPPEGEYEYRYYYGARADDGGGGEDDDLLFRFHRAFDGFSGLPLPGPE---GNSSSLAAAASILLLLGDAPDGGNDFPPITHATLFMLVAVELAFSFAMGVSCLLFNVSLLRKLAKEDQ 661 The following BLAST results are available for this feature:
BLAST of EWM27660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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