|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100125g1.423.mrna |
| Orig protein id | gnl|cribi|Naga_100125g1.423 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:500882..502051 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3021 ID=rna3021|Name=rna3021|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp
CAGGTGCCCTCATGAGACCGACAACCCGTCTCTTCATTCCGTTTCTGCTT
TCACTTGTCTCGCTGCCAAGCACGATATCATTTATTGGTCGTACTGCCTG
TTCTTCGAAGTCGCAGCGAGCCCTGCGGAGAAGAGAGGGCTCTCCCAAGG
CCGTCGCTTTCAAGCCTCAGAAGGGTCTCGCGCATGACTTTTGCCTCGCA
ATTTTAGGGGATCTTCACTTGGACCCGACAGACATGAAGCTTCATAATGA
AGGACGCAAGCATATCATAGATGTTATGGGGGGGATGAAAAAGTCGCTTT
CCTCGAGCAAGTCGCAAGCTCACCTCATCAGTCTCGGGGACCTAGGCGCA
TACGGCGAGGCAGGCACCACGGCTTGCTTCGAGCACGCAAAAGCTTACCT
TGACGGCTTTCAATTGCCTTACAACCTCGTCACTGGGAATCATGATTTGG
AGGGCATGGACGAGTTTGCCACGGATGTGGAAAATCTGCAAGCCTGGAAG
AAAGTCTTTGGTCTTAATGCACCAACCTTCTGCCATCAAATAGGAGACAA
GACTCTATGTGTGGGTCTGAGCACGACCCGTTTCCGCTCCTCGCCCTTCT
CCTCGCACGAAGTTTACATCCCGAAGGAGCAGACCATCTGGCTCGAAAAT
TTGCTTAAGCAACACCCCGAGGAAGAAGGGTGGCGGGTGCTCGTGTTCAG
TCACGCCCCGCCCATGGGAGCAGGCATCCGGGTGGTCCAGAATGTGCACA
TCAAGAATGGTTGCGCCTTTTTGAATCATTCGAGCGGCGACGAGGAACGA
CGTGTCTTCATCCGCCTCTGCAAACAGTATCACTGCATCAAGGCCTGGTT
TTCGGGGCATTTCCACCTGTCCCACGACTACGAGGACTCCATTACGGCTA
AGGAAGGCACTGTCTTTGTGCAAACGGGGGTCATGGGCGAGAAGTCGACG
AGGGACGGTCGGCGCCAGAGCCGAGTCGTGCGAGGAGATGGGGCGGGCCT
GCATGTGTACACTGTCAACCACCACAAGGGCGGGGAGCTGCGCCTGGACG
TTTCCATCCGTTACAAGCCAGGCGGAGAGGACCTGGTGGAGGCGCACGGG
CACGAGGACTACGCGCATGACAAGTGGTTCTCGGCGTACCGACCCCAGGA
GGAGGACGGGTGTTATCTGCAAAGTCCCGACGGGATTATTTTGGAGGCGA
GCGACCGCGGGGGGGGTGAAAAGGTGTGCTGGTGGCACATGGCGGACGGG
CGCGTGCTGGGGGTGCATGAGGGGCAAGTGATCGAGTATGACGCCGAGAC
GCTCTCCCCGCTGGGAATCGTGGTGGATAGGGAGCAGCTCCAGGGTCGAG
AGATGGTGGTTGTCGGGGAGGGGCAGGCCTTGATTCTCGTGTCCTCTCTG
GACGCGCTCAACGAGAAGACCACGGCCGCGGACTACGACATCATCCACCC
CAACCAGGACGGGAGTTACTGGCGGCGGTGGCAGCGAAACAAGCTCGTGC
GGCAGAGGGAGAAGGAGCGGGAGAAGATCGCAGCGGATTGGCTCAAGCAA
AATTTCAAGTAGATCTGGTTTCAGCATTGAAGCTGCGTGGCGACGGGCTA
TTGTACCATGGTTATATTAGTAGTAGTGGAGAAGACGCGCGCGTGATGAT
TATGAATGAAGGGATGCAAGTAAAAACCGCACTGTG back to topprotein sequence of rna3021 >rna3021-protein ID=rna3021-protein|Name=rna3021|organism=Nannochloropsis gaditana|type=polypeptide|length=389bp
APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQ
GDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVA
LVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAA
LVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLF
RELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALY
GSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPST
APVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNG
GGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW back to topmRNA from alignment at CM002460.1:500882..502051- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3021 ID=rna3021|Name=rna3021|organism=Nannochloropsis gaditana|type=mRNA|length=1170bp|location=Sequence derived from alignment at CM002460.1:500882..502051- (Nannochloropsis gaditana)
GCCCCTCCCCCCCCGGGGGCCTTCCTCCCCTTGAGCGTGGTGAGTAGTTT
CTGGCCTCTCTATGTGGAAGGGGGGACACCCCGCTCCCGTCTCGACGATC
TCTTGGTGGAAATCATCACGCCGGGGCTCGACGCGTCCTTCGACTGCCAG
GGCGACGTCTTCCGCCTGCCCGTCAGTGGCTGCGCTGTGCCCGACCCCCT
TCCCCGAGTCTCCCTGCTCCACAACCTGGTTGTCCAGAGGGGACTGGCGG
TCAACGGCGACGTGGGCTTCAATCGCTGGCTCCTGAACAACACGGTGGCC
TTGGTCTGCGCCGCCAGCATGGATCCTTTCGCTCAGCCACCCCCCAAACC
ACCGGCCTATCGGTTCTCGCGCTACTTCGACCCCGTGTCAGGGACGGCCT
TTGGGGAAAAGCAGGACATGTTCGGGAAAGAGTCCACGCTGGCAGCAGCC
TTGGTTTGGATCTTGCTGCATGCGGACGCGCCAAACAGGGCAGAAACGCC
TCCCATAAGCCACGACGTGACGTTCGCGCTGGTGGTTGTGGAACTTATCA
TTGCTTTTGCCACGGGGGTGGGCTGTTTCGTATTTTCATTAAGCCTGTTC
CGCGAGCTCTCACGGGCGGACAAGGAAGGAATAGGCTCCGTATCGTCCAT
GTTGAATGTGCGTGATGACGTTGAAGACGACGGGCAAGGGCCGCGGCAGG
GGAGGCGCGAAGGGGTTGTGCGGGATAGCCAACGTAGGAAGGCGCTTTAC
GGCTCGAAGGATGATCACGACACGGAGGAGGAGGAGGAGGAGGAAAGCAA
AGGTCTTGGGCTCGCAGTGGATGGGAGCGAGCACGGGGAAAACGATCATC
AAAGGACGGCGACGCGCAGAAAGAAAGGAGCTTACTACGGGCCATCCACC
GCGCCAGTCCCGGGTCGGGCACCTAATCGGGGTCTTTACCAAACGTTCCG
CTCATTTCCACGTATGCAAGCGCTTGAGAACGACGACAATAGTACAATTC
ACGGGACCGAGCTACGGCGCGTCGAAAGCGAGGGGGACGGTATGAATGGC
GGCGGGGAAAGCGGGCGCGGGGGGGGGATCGTCTCCGCCCTGGGGACCGC
AGCTGGTTCAGGCCTGCGAAATCTTGGCTCTGCTGTGAAGAGTGGCGTGT
CTTTCTTGAAATTCTGGTGA back to topCoding sequence (CDS) from alignment at CM002460.1:500882..502051- >rna3021 ID=rna3021|Name=rna3021|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at CM002460.1:500882..502051- (Nannochloropsis gaditana)
GCCCCTCCCCCCCCGGGGGCCTTCCTCCCCTTGAGCGTGGTGAGTAGTTT
CTGGCCTCTCTATGTGGAAGGGGGGACACCCCGCTCCCGTCTCGACGATC
TCTTGGTGGAAATCATCACGCCGGGGCTCGACGCGTCCTTCGACTGCCAG
GGCGACGTCTTCCGCCTGCCCGTCAGTGGCTGCGCTGTGCCCGACCCCCT
TCCCCGAGTCTCCCTGCTCCACAACCTGGTTGTCCAGAGGGGACTGGCGG
TCAACGGCGACGTGGGCTTCAATCGCTGGCTCCTGAACAACACGGTGGCC
TTGGTCTGCGCCGCCAGCATGGATCCTTTCGCTCAGCCACCCCCCAAACC
ACCGGCCTATCGGTTCTCGCGCTACTTCGACCCCGTGTCAGGGACGGCCT
TTGGGGAAAAGCAGGACATGTTCGGGAAAGAGTCCACGCTGGCAGCAGCC
TTGGTTTGGATCTTGCTGCATGCGGACGCGCCAAACAGGGCAGAAACGCC
TCCCATAAGCCACGACGTGACGTTCGCGCTGGTGGTTGTGGAACTTATCA
TTGCTTTTGCCACGGGGGTGGGCTGTTTCGTATTTTCATTAAGCCTGTTC
CGCGAGCTCTCACGGGCGGACAAGGAAGGAATAGGCTCCGTATCGTCCAT
GTTGAATGTGCGTGATGACGTTGAAGACGACGGGCAAGGGCCGCGGCAGG
GGAGGCGCGAAGGGGTTGTGCGGGATAGCCAACGTAGGAAGGCGCTTTAC
GGCTCGAAGGATGATCACGACACGGAGGAGGAGGAGGAGGAGGAAAGCAA
AGGTCTTGGGCTCGCAGTGGATGGGAGCGAGCACGGGGAAAACGATCATC
AAAGGACGGCGACGCGCAGAAAGAAAGGAGCTTACTACGGGCCATCCACC
GCGCCAGTCCCGGGTCGGGCACCTAATCGGGGTCTTTACCAAACGTTCCG
CTCATTTCCACGTATGCAAGCGCTTGAGAACGACGACAATAGTACAATTC
ACGGGACCGAGCTACGGCGCGTCGAAAGCGAGGGGGACGGTATGAATGGC
GGCGGGGAAAGCGGGCGCGGGGGGGGGATCGTCTCCGCCCTGGGGACCGC
AGCTGGTTCAGGCCTGCGAAATCTTGGCTCTGCTGTGAAGAGTGGCGTGT
CTTTCTTGAAATTCTGGTGA back to top
|