EWM27660.1, cds3013 (CDS) Nannochloropsis gaditana

Overview
NameEWM27660.1
Unique Namecds3013
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:500882..502051 -

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Properties
Property NameValue
Protein idEWM27660.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100125g1.423.mrna
GbkeyCDS
End range.
End range502051
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:500882..502051 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|585109931|gb|EWM27660.1| (hypothetical protein Naga_100125g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 789.26 bits (2037), Expect = 0.000e+0
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0
Query:    1 APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQGDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALYGSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPSTAPVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNGGGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW 389
            APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQGDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALYGSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPSTAPVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNGGGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW
Sbjct:    1 APPPPGAFLPLSVVSSFWPLYVEGGTPRSRLDDLLVEIITPGLDASFDCQGDVFRLPVSGCAVPDPLPRVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVEDDGQGPRQGRREGVVRDSQRRKALYGSKDDHDTEEEEEEESKGLGLAVDGSEHGENDHQRTATRRKKGAYYGPSTAPVPGRAPNRGLYQTFRSFPRMQALENDDNSTIHGTELRRVESEGDGMNGGGESGRGGGIVSALGTAAGSGLRNLGSAVKSGVSFLKFW 389          
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|397630703|gb|EJK69876.1| (hypothetical protein THAOC_08826 [Thalassiosira oceanica])

HSP 1 Score: 79.337 bits (194), Expect = 2.128e-12
Identity = 66/202 (32.67%), Postives = 98/202 (48.51%), Query Frame = 0
Query:   32 DDLLVEIITPGL-----DASFDCQGDVFRLPVSGCAVPDPLPRVSL--LHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNR-AETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADKEGIGSVSSMLNVRDDVE 225
            ++ ++E +T  L       SF+C GD     +  C   + LP  S+  L N  V RGL  + +VG   +   +T+ L+C  S     +         F+  F+  +G A G ++   G ESTL AA+   +L  D P + A TPPIS+     L+ VE+IIA   GV C V S+ L R  S AD+EG     + L +R  V+
Sbjct:  396 NETVIESVTQQLLQRSGSYSFNC-GDFPLWSIGDC---ESLPSASIYPLLNYRVSRGLRYSKEVGLGHFFTTSTLDLMCGGSNS--IESNYTCQTVGFASAFNATTGLALGSEE--CGLESTLTAAIALDMLIPDKPFKYASTPPISNSSVIFLIAVEMIIALGVGVACVVLSVHLMRRAS-ADEEG----DAFLELRQQVD 584          
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|1173953058|gb|OQS00626.1| (hypothetical protein ACHHYP_03242 [Achlya hypogyna])

HSP 1 Score: 72.0182 bits (175), Expect = 5.728e-10
Identity = 56/158 (35.44%), Postives = 78/158 (49.37%), Query Frame = 0
Query:   45 ASFDCQGDVFRLPVSGCA--VPDPLPRVSLL-HNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADA--PNRAETPPISHDVTFALVVVELIIAFATGVGCFVFSL 197
            A+F+   D F + V  C    P P PRV+LL HN +V RG   N  +G  + LL  T AL+  +S+D          AY F   FD  SG          G  STLAAA+   +   DA  P   +TPPI+  +   ++ +EL++A    +GC VFS+
Sbjct:  439 ATFNFFCDYFPMAVFPCGPQAPAP-PRVTLLVHNYLVYRGFLKNSFLGIAQVLLQKTFALL--SSVD----------AYHFCDIFDATSGAPMATTT---GLSSTLAAAVAINMGLPDATQPPSPDTPPINRKMILIVMCIELVVAMGVALGCVVFSI 580          
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|325180422|emb|CCA14827.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 65.4698 bits (158), Expect = 7.809e-8
Identity = 58/187 (31.02%), Postives = 84/187 (44.92%), Query Frame = 0
Query:   30 RLDDLLVEIITPGLDASFDCQGDVFRLPVSGC-----AVPDPLPRVSLLH-NLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPAYRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVW-ILLHADAP--NRAETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRAD 207
            R + +    + P     F C  D F +P   C      + DP    +LLH N ++QR L  N   G   +L N T  ++C +     A           S  FD  S        D +G +S+LAAA++  ILL A AP  N A  PP+ H +   ++ +EL +AF   +GCFVFS+       RA+
Sbjct:  446 RKNSIFSHFLAPSGTFGFLC--DQFPIPYYSCESSTSTLTDP---TTLLHYNYLMQRSLTENNFYGVAEFLRNRTALMICESDERMNAT----------SIGFDTTSAAGMNFIDD-YGVDSSLAAAMILNILLPAVAPFPNPA-VPPVDHRMLTVIMFIELTVAFGVALGCFVFSVYFVANRPRAN 615          
BLAST of EWM27660.1 vs. NCBI_GenBank
Match: gi|299471992|emb|CBN80075.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 62.7734 bits (151), Expect = 5.437e-7
Identity = 55/162 (33.95%), Postives = 76/162 (46.91%), Query Frame = 0
Query:   69 RVSLLHNLVVQRGLAVNGDVGFNRWLLNNTVALVCAASMDPFAQPPPKPPA---------------------YRFSRYFDPVSGTAFGEKQDMFGKESTLAAALVWILLHADAPNRA-ETPPISHDVTFALVVVELIIAFATGVGCFVFSLSLFRELSRADK 208
            RV +LHN +  RGL      G + WL N+T +L+          PP                          +RF R FD  SG      +   G  S+LAAA   +LL  DAP+   + PPI+H   F LV VEL  +FA GV C +F++SL R+L++ D+
Sbjct:  511 RVWVLHNFLAVRGLRRLSLNGLSVWLANSTSSLL--------GNPPEGEYEYRYYYGARADDGGGGEDDDLLFRFHRAFDGFSGLPLPGPE---GNSSSLAAAASILLLLGDAPDGGNDFPPITHATLFMLVAVELAFSFAMGVSCLLFNVSLLRKLAKEDQ 661          
The following BLAST results are available for this feature:
BLAST of EWM27660.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585109931|gb|EWM27660.1|0.000e+0100.00hypothetical protein Naga_100125g1, partial [Nanno... [more]
gi|397630703|gb|EJK69876.1|2.128e-1232.67hypothetical protein THAOC_08826 [Thalassiosira oc... [more]
gi|1173953058|gb|OQS00626.1|5.728e-1035.44hypothetical protein ACHHYP_03242 [Achlya hypogyna... [more]
gi|325180422|emb|CCA14827.1|7.809e-831.02conserved hypothetical protein [Albugo laibachii N... [more]
gi|299471992|emb|CBN80075.1|5.437e-733.95conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3021rna3021Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications