EWM27671.1, cds3003 (CDS) Nannochloropsis gaditana

Overview
NameEWM27671.1
Unique Namecds3003
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:470572..471009 -
Alignment locationCM002460.1:470058..470420 -
Alignment locationCM002460.1:469652..469917 -
Alignment locationCM002460.1:469500..469601 -
Alignment locationCM002460.1:469314..469458 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27671.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100125g12.434.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:470572..471009 -
CM002460.1supercontigCM002460.1:470058..470420 -
CM002460.1supercontigCM002460.1:469652..469917 -
CM002460.1supercontigCM002460.1:469500..469601 -
CM002460.1supercontigCM002460.1:469314..469458 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005031Polyket_cyc
Homology
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|585109942|gb|EWM27671.1| (hypothetical protein Naga_100125g12 [Nannochloropsis gaditana])

HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPLCGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRSGRIALERSCTDEDESAGGGKCGKSEASFGLWLKGCKVVLFCISGTMFWLVEHSLLERSTVPSRHCGSVFLDRKISFSTRKLRF 437
            MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPLCGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRSGRIALERSCTDEDESAGGGKCGKSEASFGLWLKGCKVVLFCISGTMFWLVEHSLLERSTVPSRHCGSVFLDRKISFSTRKLRF
Sbjct:    1 MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPLCGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRSGRIALERSCTDEDESAGGGKCGKSEASFGLWLKGCKVVLFCISGTMFWLVEHSLLERSTVPSRHCGSVFLDRKISFSTRKLRF 437          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|553180477|ref|XP_005853410.1| (hypothetical protein NGA_0260102 [Nannochloropsis gaditana CCMP526] >gi|422295650|gb|EKU22949.1| hypothetical protein NGA_0260102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0
Query:    1 MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPLCGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRSGR 356
            MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPLCGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRSGR
Sbjct:    1 MFRAATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKRVMALCLLSLVSLAAGAPCPIDDGGWSTSRSKTLTGFLRPSTSAPVTPLCGGFRPGQRRELLSPRGVSYTGTSTGSSHMSSPVVVQLNHSSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRSGR 356          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|1072224186|gb|OEU08938.1| (hypothetical protein FRACYDRAFT_249280 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 154.066 bits (388), Expect = 1.279e-38
Identity = 84/206 (40.78%), Postives = 120/206 (58.25%), Query Frame = 0
Query:  167 PKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKI-------------------TSRW------PSLTKGVFTLSKFRFRLSVVHKHAPEEN--RLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVE 345
            P P  LP L+ E  I L  G+R+Q Q R G  GSGYVV+D+ A    +W  LL FE Y ++IPT+R +++                   T R       PS+T+  F LSKFR  ++ +HK+ P  N   + F LDP C     +L+ A+G WY E+ P  R +G+TRVY+ A+++++  +P ++VDYAAERA+ RAT+WLKP VE
Sbjct:  202 PLPFELPKLTVEQKIKLVNGKRIQEQSRMGREGSGYVVLDIEAAPYVIWECLLDFESYPELIPTVRAMQLYTSTKLNTGFVNEKPVLPGTGRETRHYGTPSITRASFILSKFRLNIAAIHKYTPHPNGDYMEFTLDPSCTNV--VLKGAKGTWYTEENPDGR-KGFTRVYLLASLQISRALPKFIVDYAAERAMPRATNWLKPEVE 404          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|223995163|ref|XP_002287265.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976381|gb|EED94708.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 142.51 bits (358), Expect = 1.292e-33
Identity = 85/233 (36.48%), Postives = 122/233 (52.36%), Query Frame = 0
Query:  141 SSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSR--------------------------WPSLTKGVFTLSKFRFRLSVVHKHAPEEN--RLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVE 345
            SS   T  S  Y+     A   R +   P  LP L  +    L  G+RVQ+Q   G  GSG+VV DV A S+ VW+ LL F+ Y   IPT+R+V + +                            PS+T+  F+LSKFR +++ +H + P  N   + F LDP       +L+ A+G W+ +  P D  EG+TRV++   ++V+ L+P W+VDYAA RA+ RAT+WLKP VE
Sbjct:  305 SSSQTTPASKKYSKTKVSATFARSSETLPFELPKLDSKQYRQLMNGERVQYQDDMGLAGSGFVVWDVKAPSSVVWDCLLDFKSYPQTIPTVREVTMYTNTHLKEDYRAEKPLDFEDGTAAICKHGIPSVTRAQFSLSKFRLKIAAMHTYRPHSNGDYMVFTLDPASTNM--VLKYAKGIWHTQSNP-DGKEGYTRVWLLCELRVSKLLPQWIVDYAAARAMPRATTWLKPQVE 534          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|1210529208|dbj|GAX12354.1| (hypothetical protein FisN_1Hh287 [Fistulifera solaris])

HSP 1 Score: 139.043 bits (349), Expect = 2.764e-33
Identity = 76/213 (35.68%), Postives = 114/213 (53.52%), Query Frame = 0
Query:  167 PKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRW-------------------------PSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRS 354
            P P +LP LS E    L AG+R+Q Q + G  GSG+VVVDV A    VW  LL FE Y + I T+R +++ +                            S+++  F LSK++ +++ +HK+ P  +        D     ++L+ A+G WY +  P  R    TRV++  ++KV+ L+P ++VDYAA RA+ RAT+WLKP VEQ   E+ RS
Sbjct:  187 PLPFSLPSLSDEQRKQLAAGERIQEQSKMGREGSGFVVVDVNAPPYVVWECLLDFENYPEYIKTVRSMRMFTNTHLASSYLAEDPVLPESTRAMRHYGTASISRASFVLSKYQLKIAAIHKYQPHPDGHYMVFTLDRANKGAVLQDAKGIWYTQRNPDGRGPNVTRVWLLCSLKVSKLLPTFIVDYAANRAMPRATTWLKPTVEQKYSEIQRS 399          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|1210520158|dbj|GAX21041.1| (hypothetical protein FisN_1Lh287 [Fistulifera solaris])

HSP 1 Score: 139.043 bits (349), Expect = 3.090e-33
Identity = 76/213 (35.68%), Postives = 114/213 (53.52%), Query Frame = 0
Query:  167 PKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRW-------------------------PSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRS 354
            P P +LP LS E    L AG+R+Q Q + G  GSG+VVVDV A    VW  LL FE Y + I T+R +++ +                            S+++  F LSK++ +++ +HK+ P  +        D     ++L+ A+G WY +  P  R    TRV++  ++KV+ L+P ++VDYAA RA+ RAT+WLKP VEQ   E+ RS
Sbjct:  190 PLPFSLPSLSDEQRKQLAAGERIQEQSKMGREGSGFVVVDVNAPPYVVWECLLDFENYPEYIKTVRSMRMFTNTHLASSYLAEDPVLPESTKAMRHYGTASISRASFVLSKYQLKIAAIHKYQPHPDGHYMVFTLDRANKGAVLQDAKGIWYTQRNPDGRGPNVTRVWLLCSLKVSKLLPTFIVDYAANRAMPRATTWLKPTVEQKYSEIQRS 402          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|298706076|emb|CBJ29186.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 134.42 bits (337), Expect = 2.204e-31
Identity = 86/178 (48.31%), Postives = 110/178 (61.80%), Query Frame = 0
Query:  172 LPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWP---SLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQY-RSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVE 345
            LP L  EDL  LRAGQRVQ Q R G  GSG VVVDV AD   V   L  +E YA+MI T+R+ ++  +     S   GV  +S+F+  + VV     E N + F LDPDC +  R++L  A GF+Y+E  P DRP G++RV+M A V VN  VP  +VDYAA RAL RA++W+KP  E
Sbjct:  241 LPLLDDEDLTQLRAGQRVQKQTRQGGSGSGSVVVDVRADPDVVLGLLTKYEDYAEMIDTVRECEVFPQGETADSRKVGVM-VSRFKLHIRVVMSLLRERNMVQFELDPDCTKAGRAVLREATGFFYVES-PPDRP-GFSRVWMLAKVDVNRFVPGAIVDYAAGRALPRASNWIKPTCE 415          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|219126873|ref|XP_002183672.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404909|gb|EEC44854.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 131.339 bits (329), Expect = 5.527e-30
Identity = 78/233 (33.48%), Postives = 120/233 (51.50%), Query Frame = 0
Query:  149 SSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRW-------------------------PSLTKGVFTLSKFRFRLSVVHKHAPEENR--LNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRS 354
            S+   +P S     +   P P  LP LS +    L  G+R+Q Q + G  GSGYVV+DV A    VW  LL FE Y + I T+R ++I +                            S+T+  F LSKF+  ++ +HK+ P  +   + F LD  C+    +L+ A+G W+ +  P  R    TRV++   VKV+S++P ++V+Y A+RA+ RAT+WL+P VEQ   +  R+
Sbjct:  217 SADTGIPDSDDNDNKTIEPLPFALPNLSSQQRRALANGERIQEQSKMGREGSGYVVLDVEAPPYVVWECLLDFEAYPENIGTVRSMRIFTNTHLKSSYIAEKPLLPGTGKETRHYGNASVTRANFVLSKFQLNIAAIHKYVPHPDGHFMEFTLDKACKNV--VLQDAKGIWHTQSNPDGRGAHVTRVWLLCEVKVSSVLPSFIVEYTAKRAMPRATTWLRPLVEQKASQWLRT 447          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|1129162644|gb|OLP75831.1| (hypothetical protein AK812_SmicGene44312 [Symbiodinium microadriaticum])

HSP 1 Score: 117.472 bits (293), Expect = 7.237e-27
Identity = 73/190 (38.42%), Postives = 103/190 (54.21%), Query Frame = 0
Query:  170 TNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKI----TSRWPSLTKGV-FTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDRS 354
            + LP LS  +   LR+G+RVQ Q R G  G G V  DV A ++ V   L  F  Y  MIP +RK  +     +   +LT    + +S+F   +S+VH  + +E  + F LDP       +L+   GFWY+E   A   +G  RV++   +   + +P WL+DYA++RAL RATSWLKP VEQ   EM  S
Sbjct:   47 SELPELSSSEQQRLRSGRRVQRQTREGPKGQGLVAFDVRAPASVVLERLADFANYPSMIPVVRKAVVHLSHVADDGTLTAHCSYRISRFYLGVSIVHSVSRDEGLVRFDLDPTVSAM--MLQEVTGFWYVEALDA---QGACRVWLKVDLHAANWLPHWLIDYASKRALTRATSWLKPNVEQLWSEMQSS 231          
BLAST of EWM27671.1 vs. NCBI_GenBank
Match: gi|1129207623|gb|OLQ09486.1| (hypothetical protein AK812_SmicGene6879 [Symbiodinium microadriaticum])

HSP 1 Score: 109.383 bits (272), Expect = 1.162e-23
Identity = 71/211 (33.65%), Postives = 104/211 (49.29%), Query Frame = 0
Query:  141 SSVAITEESSAYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPS-----LTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQ 346
            +S  +   S A+A+  +Q  A   A   P  L  L+ E+  +LR   RVQ Q + G  G G V ++V A    V   L  F +Y DM+  IR  ++ S  PS     + K  + +++F F +  VH       R++F +DPD      +L  A GFW +   P  +  G  RV        + L+P WLV+Y A + LKRATSWLKP+ E+
Sbjct:   36 ASSVMASRSRAWAVVATQGDAWLEAKNFPRQLWDLTAEEHQVLRDAGRVQKQAQLGNRGWGLVRINVRAPDHVVLRCLSNFRQYPDMMSAIRAAEVNSTSPSADAAMVAKCTYRITRFWFEIPAVHHVDQRRGRVSFDIDPDATGL--VLREASGFWQVV--PCRQNPGECRVVFRVYAHASKLMPEWLVEYGARKCLKRATSWLKPFAEK 242          
The following BLAST results are available for this feature:
BLAST of EWM27671.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109942|gb|EWM27671.1|0.000e+0100.00hypothetical protein Naga_100125g12 [Nannochlorops... [more]
gi|553180477|ref|XP_005853410.1|0.000e+0100.00hypothetical protein NGA_0260102 [Nannochloropsis ... [more]
gi|1072224186|gb|OEU08938.1|1.279e-3840.78hypothetical protein FRACYDRAFT_249280 [Fragilario... [more]
gi|223995163|ref|XP_002287265.1|1.292e-3336.48predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210529208|dbj|GAX12354.1|2.764e-3335.68hypothetical protein FisN_1Hh287 [Fistulifera sola... [more]
gi|1210520158|dbj|GAX21041.1|3.090e-3335.68hypothetical protein FisN_1Lh287 [Fistulifera sola... [more]
gi|298706076|emb|CBJ29186.1|2.204e-3148.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|219126873|ref|XP_002183672.1|5.527e-3033.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1129162644|gb|OLP75831.1|7.237e-2738.42hypothetical protein AK812_SmicGene44312 [Symbiodi... [more]
gi|1129207623|gb|OLQ09486.1|1.162e-2333.65hypothetical protein AK812_SmicGene6879 [Symbiodin... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3011rna3011Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications