EWM27682.1, cds2989 (CDS) Nannochloropsis gaditana

Overview
NameEWM27682.1
Unique Namecds2989
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:445913..446725 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27682.1
ProductCS-like domain protein
Orig transcript idgnl|cribi|Naga_100104g21.5945.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:445913..446725 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|585109954|gb|EWM27682.1| (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MPLLIALSEVIGMPKPILRLPKSRCLSLSVWISFVFCAGVCQGWFLCCRARPPYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAEKFDTQAYIHQMLGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMASQGGRSGGGGEQHEEPKRSNGS 270
            MPLLIALSEVIGMPKPILRLPKSRCLSLSVWISFVFCAGVCQGWFLCCRARPPYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAEKFDTQAYIHQMLGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMASQGGRSGGGGEQHEEPKRSNGS
Sbjct:    1 MPLLIALSEVIGMPKPILRLPKSRCLSLSVWISFVFCAGVCQGWFLCCRARPPYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAEKFDTQAYIHQMLGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMASQGGRSGGGGEQHEEPKRSNGS 270          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|397588921|gb|EJK54452.1| (hypothetical protein THAOC_25915 [Thalassiosira oceanica])

HSP 1 Score: 87.0409 bits (214), Expect = 5.678e-16
Identity = 78/258 (30.23%), Postives = 119/258 (46.12%), Query Frame = 0
Query:   23 SRCLSLSVWISFVFCAGVCQGWFLCCRARPPYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGG-KLMGRIALDGTYWSLEGE-GNARAVKLLLEKKLGALENN-----------MDWRRVL--SEEAATEVEYQEAEKFDTQAYIHQM-LGPGGVNMSLVDREMFGGLA--GGVMANVS-QEALREYVEGKVLDD--ATGMASQGGRSGGGGE 259
            +R L+L++ I  ++C   C   F    ++       R RGN     G G       VA KYSW E ++E+EV V  P  T  +DV FK  +  V L L + T LL G  K+ G I +DGT+WS+EG     R V + +EK      ++            DW+ V    E+  +  EY E E  D + Y  ++ +    ++MS VD+ +F   A  GG  +  S ++     +E + LD    TG+A +  +   G E
Sbjct:    4 TRFLTLTLPI--LYCCAPC-APFEIHPSKYRSADRSRGRGNSQVFSGVG-------VADKYSWNEEQFEIEVKVVAPPGTAAKDVKFKCKSDGVDLRLGDGTVLLDGERKVRGNICVDGTFWSIEGPVEEERTVTVTIEKHFLPTSSSGGTQTYDSATQFDWKGVYLNDEDEVSLREYDEPEVLDVREYASKLGVDIDNIDMSKVDKTLFSSKAAPGGEESEASKKDGFHFDIETETLDQLTRTGLAKEIVQQADGDE 251          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|1210521318|dbj|GAX20066.1| (hypothetical protein FisN_1Lh452 [Fistulifera solaris])

HSP 1 Score: 85.1149 bits (209), Expect = 2.127e-15
Identity = 68/218 (31.19%), Postives = 109/218 (50.00%), Query Frame = 0
Query:   53 PYLMLQR------TRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLV-NSTELLLGGK--LMGRIALDGTYW----SLEGEGNARAVKLLLEKKLGALENNM-----DWRRVLSE--EAATEVEYQEAEKFDTQAYIHQM-LGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMAS 249
            P+L++ R      T G V  L GG G      VA  Y W E  +E++VTV VP  TR +D++F+    S+ L L  +   +LL G   L GR+ LDGTYW    S E +   R V + +EK +   +++      DW+ V +   E   E  Y E E+ + + Y   + +    +NMS+VD+ MF   + G+  N+++ +L E  +  ++ + T  A 
Sbjct:   21 PFLIIPRAVRLTPTVGTV--LFGGRG------VATSYRWKEEAFEIDVTVQVPKETRAKDIIFRPTVNSIDLRLKGDDAPVLLDGSRTLRGRVNLDGTYWVISDSEEKDDAFREVTVTIEKLIRTPQDDFEVVEYDWKGVYANDTEEVLERTYDEPEELNVREYAASLGVDIDNINMSMVDKTMF---SSGM--NITKNSLDELNKAGLIKEITQQAD 225          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|1210526930|dbj|GAX14257.1| (hypothetical protein FisN_1Hh452 [Fistulifera solaris])

HSP 1 Score: 82.0333 bits (201), Expect = 2.854e-14
Identity = 65/205 (31.71%), Postives = 106/205 (51.71%), Query Frame = 0
Query:   60 TRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLV-NSTELLLGGK--LMGRIALDGTYWSL---EGEGNA-RAVKLLLEKKLGALENNM-----DWRRVLSE--EAATEVEYQEAEKFDTQAYIHQM-LGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMAS 249
            TRG V  L GG G      +A  Y W E  +E++VTV VP  TR +D++F+    S+ L L  +   +LL G   L GR+ LDGTYW +   E + +A R V + +EK +   +++      DW+ V +   E   E  Y E E+ + + Y   + +    +NMS+VD+ MF   + G+  N+++ +L E  +  ++ + T  A 
Sbjct:   34 TRGIV--LFGGRG------IASGYRWKEEAFEIDVTVQVPKETRAKDIIFRPTVNSIDLRLKGDDAPVLLDGSRTLRGRVNLDGTYWVISDSEDKDDAFREVTVTIEKLIRTPQDDFEVVEYDWKGVYANDTEEVLERTYDEPEELNVREYAASLGVDIDNINMSMVDKTMF---STGM--NITKNSLDELNKAGLIKEITQQAD 225          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|219122740|ref|XP_002181698.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406974|gb|EEC46912.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.8702 bits (185), Expect = 3.872e-12
Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 0
Query:   79 VAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKL-----------GLVNSTELLLGG--KLMGRIALDGTYW---SLEGEGNARAVKLLLEKKLGALENNM-----DWR--RVLSEEAATEVEYQEAEKFDTQAYIHQM-LGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDD 243
            +A  Y+W E  +E++VTV VPA    ++++F+    S+ L           G  + T +LL G  KL G++ LDGTYW    L+ +   R V + +EK +   +++      DW+   V   E   E +Y E EK + + Y  ++ +    ++MS+VD+ MF   + G+  N++Q+ + E  +   L D
Sbjct:   72 IATNYTWKEEAFEIDVTVTVPADVVAKNIIFQPTGRSIDLRYKSETKKGSNGDRSKTIVLLDGSRKLRGKVNLDGTYWVISDLQDDFAQRQVTVTIEKIVRTPKDDFEVVDYDWKGIYVDDTEEVLERKYDEPEKLNVREYAAKLGVDIDNIDMSMVDKTMF---SSGM--NLTQKNMDELTKAGYLSD 255          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|1072236519|gb|OEU21247.1| (hypothetical protein FRACYDRAFT_181258 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9366 bits (167), Expect = 1.099e-9
Identity = 64/229 (27.95%), Postives = 97/229 (42.36%), Query Frame = 0
Query:   79 VAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNS--------------------TELLL--GGKLMGRIALDGTYWSL-------------EGEGNARAVKLLLEKKLGALENNM-----DWRRVL--SEEAATEVEYQEAEKFDTQAYIHQM-LGPGGVNMSLVDREMF-GGLAGGVMANVSQEALREYVEGKVLDDATGMASQGGR--SGGGGEQH 261
            +A  Y+W E  +++E+ V VP  TR +D+ FK    S+ L L  S                      +LL    KL GRI LDGTYW +             E +   R V + +EK++   ++       DW  V    EE  T  +Y  AE+ + + Y   M +    ++M+LVD+ MF  GL      NV++  L    E  ++ + T     G    +G  GEQ 
Sbjct:   65 IAPSYTWQEEAFDIEIIVKVPKETRAKDIHFKVKPNSLDLRLNASPPNDDDDGEDSSEVVVAVVEERILLDPSRKLRGRIVLDGTYWIISDPDPDDKDDGKDEFQDEYREVTVTIEKQIRTPKDEFDIIEYDWNGVYEEDEEEVTYRKYDVAEELNVRDYAASMGVDIDNIDMNLVDKSMFTSGL------NVTKSTLDNMKEAGLMTEVT-QQKDGSEWITGEDGEQK 286          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|298709839|emb|CBJ26179.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.1662 bits (165), Expect = 2.446e-9
Identity = 52/162 (32.10%), Postives = 78/162 (48.15%), Query Frame = 0
Query:   74 GGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEG-EGNARAVKLLLEKKLGALE----NNM--DWRRVLSEEAATEVEYQEAEK-FDTQAYIHQMLGPGGVNMSLVDREMFGGLAGGVMANV 227
            GG G     YSWTE + ++EV VP+P  T  + V      TS+ LGL      +L G L G++  D ++W++E  E     V  L  +K+  +E    N+M  DW  VL  E    V Y + +K FD   Y+ +M      ++  VD+ MF  L   +  N+
Sbjct:  206 GGTGDTE-YYSWTETDSDMEVRVPLPPGTAAKSVQLSVTKTSLTLGLKGREGPVLKGSLKGQVHADESHWTMEEMEDTGEKVLYLCLEKVADMEALAANSMPQDWVGVLEGEEPLNVYYPDKDKDFDVGEYVKRMGYDRERDIGKVDKAMFSDLTAEMKENL 366          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|470105835|ref|XP_004289284.1| (PREDICTED: protein BOBBER 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 65.4698 bits (158), Expect = 4.013e-9
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 0
Query:   75 GVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAE 189
            G G    KYSWT++  EV + +PVPA T+  DV+++A A  ++ GL +    ++ G L   I  D   WS+E +    AV +LL K     +N  DW + L  +   E++ Q+ E
Sbjct:   55 GNGLDLDKYSWTQSLQEVNIVIPVPAGTKSRDVVYEAKAKHLRFGLKDQPTPIIDGDLFQSIKPDECLWSIEDQS---AVSILLTK-----QNQTDWWKALV-KGDPEIDTQKVE 160          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|470105771|ref|XP_004289253.1| (PREDICTED: protein BOBBER 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 65.4698 bits (158), Expect = 4.772e-9
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 0
Query:   75 GVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAE 189
            G G    KYSWT++  EV + +PVPA T+  DVL++A A  +K GL      ++ G L   I  D   WS+E +    AV +LL K     +N  DW + L  +   E++ Q+ E
Sbjct:   54 GNGFDLEKYSWTQSLQEVNIMIPVPAGTKSRDVLYEAKAKHLKFGLKGQPAPIIDGDLFQSIKPDECLWSIEDQS---AVSILLTK-----QNQTDWWKSLV-KGDPEIDTQKVE 159          
BLAST of EWM27682.1 vs. NCBI_GenBank
Match: gi|669159796|ref|XP_008615460.1| (hypothetical protein SDRG_11208 [Saprolegnia diclina VS20] >gi|530732779|gb|EQC31021.1| hypothetical protein SDRG_11208 [Saprolegnia diclina VS20])

HSP 1 Score: 61.2326 bits (147), Expect = 1.780e-7
Identity = 37/114 (32.46%), Postives = 57/114 (50.00%), Query Frame = 0
Query:   47 CCRARPPYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEK 160
                +PP      TR       G   P G G    KYSWT++  E+ VT+PVPA T+  D+  +  + SV + +   +  L+ G   G+I ++ + WSL+   ++ AV L LEK
Sbjct:   80 AATVQPPPTQQPDTRPIALTDDGKQVPEGNGGRTDKYSWTQSLQELTVTIPVPAGTKSRDLDVRMTSASVHVAIKGHSAPLVHGTFPGKIKVEESLWSLD---SSEAVVLSLEK 190          
The following BLAST results are available for this feature:
BLAST of EWM27682.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109954|gb|EWM27682.1|0.000e+0100.00CS-like domain protein [Nannochloropsis gaditana][more]
gi|397588921|gb|EJK54452.1|5.678e-1630.23hypothetical protein THAOC_25915 [Thalassiosira oc... [more]
gi|1210521318|dbj|GAX20066.1|2.127e-1531.19hypothetical protein FisN_1Lh452 [Fistulifera sola... [more]
gi|1210526930|dbj|GAX14257.1|2.854e-1431.71hypothetical protein FisN_1Hh452 [Fistulifera sola... [more]
gi|219122740|ref|XP_002181698.1|3.872e-1229.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072236519|gb|OEU21247.1|1.099e-927.95hypothetical protein FRACYDRAFT_181258 [Fragilario... [more]
gi|298709839|emb|CBJ26179.1|2.446e-932.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|470105835|ref|XP_004289284.1|4.013e-933.91PREDICTED: protein BOBBER 1-like [Fragaria vesca s... [more]
gi|470105771|ref|XP_004289253.1|4.772e-935.65PREDICTED: protein BOBBER 1-like [Fragaria vesca s... [more]
gi|669159796|ref|XP_008615460.1|1.780e-732.46hypothetical protein SDRG_11208 [Saprolegnia dicli... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2997rna2997Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications