rna2974, rna2974 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2974
Unique Name	rna2974
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3365
Alignment location	CM002460.1:396561..397703 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100034g5.6320.mrna
Orig protein id	gnl\|cribi\|Naga_100034g5.6320
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:396561..397703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g5	gene2854	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2974	rna2974-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27747.1	cds2966	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:396561..397703+
coding sequence from alignment at CM002460.1:396561..397703+

mRNA sequence

>rna2974 ID=rna2974|Name=rna2974|organism=Nannochloropsis gaditana|type=mRNA|length=3365bp
TCTGATTGAGGTCGGCCTGGTACATAGACCTGATCTGTTTTGACATTTAT
CAACATTGCCTGTATACTTAGCCAGTGTGGCAGCCTCCACCTCCCTGCGG
AGGGCTCTCCCGCGCATAACGCGAGTGAAACCTGTCATTTTTTCTGCAGA
CTTTTGCCGGCCCAGGTGCCTGTTGCAAGCGTGCATGTAAGCCAGAGAGC
TGATCTACAAATAAATCTTGATTGTCAGGGCTCTGTCTTATGCGATGGTC
TGTTTACTCCGAACGGACGAAGAAGACCCGTCATCTCCATCTATGAGTCA
CGCAGACGATTGCTGTCCTCATCGATCAGCAAAAATCACCTCGTGCTCGT
GTTATTATACTAGTTGCCTGTAGAAGCTTGATCGTACTCTATCGTGACCC
ATCTATTAGTACTCACTTATAATCTCTTTTTCTTCTGAATAAAAACCTAC
TTCTCGGAAAGGTGCGCGGAAACAGACTCCAGAAGGATGCACGTCAAAAA
GCGCGATGGTCGCCTTGAAGCGGTACAGTTTGATAAGATTACGGCTCGCA
TCAAAAAGCTAGTCTACGGATTGGACGCCAACTACGTAGACCCCGTCGTC
ATAACCCAGAAGGTAATCAGCGGGGTCTACGACGGGGTGACCACCTCGGA
GCTAGACGAACTGGCCGCCCAGACGGCCGCCTACTGCTCCACGCAGCACC
CAGACTTCTCCAAGCTGGCAGCTCGTATCGCTGTGTCCAATCTGCACAAG
AATACAACCAAAATTTTCTCTGATGCGATTGAGCAGTTCCGCAGCTACCG
GCACCCGAAGAACGGGCAGCCTGCTGCGCTCATCGCTGAGGACGTCTATC
ACATTGTCATGGCCAACAAGGACCGCCTGAACTCGTCAATTATTTATGAC
CGGGACTTTGATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTA
CCTTCTTAAGATGAACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCA
TGCGTGTGGCAATTGGTATCCACAAAGAGAACATTGACGCGGCGCTGGAG
ACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCTACACT
TTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGA
CCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGC
GCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACAT
TCGGGCGCGAGACTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCA
TCGTACCTATGCTCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCAG
GGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAGCCCTGGCA
TGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGAGT
TGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTC
ATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGA
GTGCCCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACG
CCAGCTACGAGAAGAGTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAG
CTCTGGTTCGCGATTCTGGACTCCCAGGTGGAGACAGGCACGCCTTACAT
GCTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAGAACTTGGGCA
CCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTACACGTCGCCC
GATGAGGTCGCGGTCTGCAACCTGGCCTCCGTGAACCTTTCCGCATTCAT
CCAAGGGGAGGGCTCCGGTAGCGGGAAGACGCCCACTTACGACCTGCAGC
GGCTGTATGAAATCACGAAGGTGGTGACACGAAACCTGAACCGCGTCATA
GACATCAACTACTACCCTGTCGAGGAAGCCAGGCGCTCGAACATGCGACA
CCGCCCCATCGGGATCGGCGTGCAGGGTTTGGCGGACGCCTTCATCAAGA
TGCGATTCCCATTCGAGTCTCCGGAGGCCCAGCAGCTTAACAAGGACATT
TTCGAGACCATGTACTTCGGGGCGGTAGAGGCGTCGATGGAGATCGCGAT
GAAGGAGGGTCCCTACGAGACCTTCGCCGGCTCCCCCATGAGCAAGGGCG
TCTTCCAATTCGACATGTGGGGCGTGACCCCCTCAACTCGCTGGGACTGG
GCCGGTTTACGCTTCAAAGTGCAGGAGCACGGTGTCCGCAACTCACTATT
GCTCGCACCCATGCCTACCGCATCTACTGCGCAGATCCTGGGCAACAACG
AGTCTGTTGAGCCTTTCACATCGAACATGTACTCCCGTCGCGTGTTGGCG
GGCGAATTCACGGTGGTGAACAAGTACCTGCTCCGCGACCTCATCGACCA
AGGCCTGTGGACTTCTGAAGTCCGAAATCAAATTATGGGCAACAGGGGCT
CAGTCCAGAATGTGGCCAGCATCCCTCGGGAGCTCAAGGACCTGTACAAG
ACAGTGTGGGAGATCCGGCAGAAGTGCGTGATCGACCAGGCCGCCGACCG
CGGCGCCTACATCTGTCAGTCGCAGTCTCTCAATATCCATTTGGCCAATC
CGACGCCTGCACAGCTCACCTCCATGCACTTCTATTCCTGGAAGAAGGGG
CTCAAGACCGGCATGTACTACCTACGGACCCGGCCCAAGGCGGATGCCAT
ACAGTTCACGGTGGATAAGAGCCAGTTGACGCAATCTGAAAAAGCAGGGG
CTGCCGCGAGCAATAAGTCGGAGGAAGAGGAGTGTTTGACATGCAGTGCG
TAAAGAGATTTTGTGTAGTGAGGTCACATGTCCTAGACCGGCGCAATGCA
GCAGGCCTTCTAGAGCGAGATGCGCAGCCCTCCAGTACGCCTCAGCAATT
GCGCTTGCAGCATCATGCAGAGATGCGACGGTGGTGGAATGGGAGCAGTG
TGAGTGGGCATTCTGACTGGACACTTCGTGCCTGCTTATCGGGATGGGGT
CTCTGTTTCCTGCCTTATCCCGACGCCTCGTCCACGACTGCAAGGGCGTT
CGAGACCTGTAGATGACAGTAAGTAAGCATAGGCAAAGAATAGCAGCAGC
ATCCGGAAATTCAGGAAGGTGACTGTATACAACGATACCAGAAATAAACG
TGGGTGCTCAATACTTCCTCAACGGAAGTCACATTCGAGTGAAATATACT
CCGGGAGATCCGCTGGAGGATGCTGGTGACTCAGGACGAAAGGAAGAAAA
AAGCCATACATTCAAAGATGTGTACGAACAAAGAAAATGAGACAATGAAG
AAGTATGCCTTTGTG

protein sequence of rna2974

>rna2974-protein ID=rna2974-protein|Name=rna2974|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MSLPRAEERPESQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQY
EAGQSIHEIARRLCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANH
RLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEA
MLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEV
LPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPVEKL
VLLNGDVLERM

mRNA from alignment at CM002460.1:396561..397703+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2974 ID=rna2974|Name=rna2974|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at CM002460.1:396561..397703+ (Nannochloropsis gaditana)
CACGCCAATCACTCCCTGCAGcatccctcctcacctctgCTCACTGCCAT
GGCGCCGCCTTTCGCGGAGGCTCGCCTGCGAATTGCCACCTCTTAAGCCC
ACCAGGACCTGGCTCTGGCAAGGTAAGTAAGCTGTAGACTCGAGGCGCcg
gatggagggcgtgcaTTTTTCTGGCGCTTCGCGTCATGTTGTGGACATAA
CTCGCTCGCGGCACAATTGTCTACACAGGGCAACAGGGCTTCGCTTTATA
CCCCCCCCACATTGCCCTGGCGCTCATTCTTGCGTCAAAGGGTAGTAACC
TCTACAAAAGCGGCGATGTCTTTACCCCGTgcggaggagaggccggAGTC
ACAGGATGTTTCGCTCGATGCGCTGCTAAGTATCCGGCATCAACGCTTGG
TGAGGCATGTAAAAGCTGTATCCGGAGACCATCGTCGGCACGTGCTGGCC
TATTGCCGGCAATATGAGGCTGGTCAGAGCATTCATGAAATAGCTCGCCG
TCTGTGTTATCCCCCCTACTTACTGGCGCGCATGCTCGTGGAAGTTTTGT
GTAAGGTCGGGACACGCACAAAGGTGACAGAATTGATGCGGGCTCCTCAC
CTTATCGCGAATCATCGATTACGCCGTGAAGTTATGCATTGCATCGCAGT
CGACAGAGATTTTTCGCCCGGTGCTGATCGCGTGTCTCGAAGCATCGGAT
TGGACTACGAGCGGGAGCTGCAATTGCGCTTGCGAGCTTTGGCTATTCCT
TTCGAAGACGAAGCTATGTTGCGTGCACGAGGCCTGCCCAAGACGCCAGA
TGTCCGCTTGTCGGTCCCTCTAGGCGTGGTTGACGCTTGCGGGAAGCACC
ACGTCGTAAACTGGATAGACAGCAAGGCCCTTTATGGCACGCGAGAAACc
ttcgagggggaggtcttGCCGCAGGTTACACGGTACGTCAATCGGTTCGG
ACCGGGGTGCGTCGTGTTCTGGTTCGGGTTCTGCCCGGGTGTTCAGGAGC
TCCTGTCCTTGCAAGAATGCCACGTTGTGGTAATAGATGACTTTCCGCCG
CCGGTCGAGAAACTAGTACTCCTAAATGGAGATGTGCTGGAAAGAATGTG
ACTGTCCGTGCGCCAAAAAAGTAGTTTCAATGGGGCCTAGTGG

Coding sequence (CDS) from alignment at CM002460.1:396561..397703+

>rna2974 ID=rna2974|Name=rna2974|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at CM002460.1:396561..397703+ (Nannochloropsis gaditana)
ATGTCTTTACCCCGTgcggaggagaggccggAGTCACAGGATGTTTCGCT
CGATGCGCTGCTAAGTATCCGGCATCAACGCTTGGTGAGGCATGTAAAAG
CTGTATCCGGAGACCATCGTCGGCACGTGCTGGCCTATTGCCGGCAATAT
GAGGCTGGTCAGAGCATTCATGAAATAGCTCGCCGTCTGTGTTATCCCCC
CTACTTACTGGCGCGCATGCTCGTGGAAGTTTTGTGTAAGGTCGGGACAC
GCACAAAGGTGACAGAATTGATGCGGGCTCCTCACCTTATCGCGAATCAT
CGATTACGCCGTGAAGTTATGCATTGCATCGCAGTCGACAGAGATTTTTC
GCCCGGTGCTGATCGCGTGTCTCGAAGCATCGGATTGGACTACGAGCGGG
AGCTGCAATTGCGCTTGCGAGCTTTGGCTATTCCTTTCGAAGACGAAGCT
ATGTTGCGTGCACGAGGCCTGCCCAAGACGCCAGATGTCCGCTTGTCGGT
CCCTCTAGGCGTGGTTGACGCTTGCGGGAAGCACCACGTCGTAAACTGGA
TAGACAGCAAGGCCCTTTATGGCACGCGAGAAACcttcgagggggaggtc
ttGCCGCAGGTTACACGGTACGTCAATCGGTTCGGACCGGGGTGCGTCGT
GTTCTGGTTCGGGTTCTGCCCGGGTGTTCAGGAGCTCCTGTCCTTGCAAG
AATGCCACGTTGTGGTAATAGATGACTTTCCGCCGCCGGTCGAGAAACTA
GTACTCCTAAATGGAGATGTGCTGGAAAGAATGTGA

Synonyms

Publications