EWM27747.1, cds2966 (CDS) Nannochloropsis gaditana

Overview
NameEWM27747.1
Unique Namecds2966
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:396876..397661 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27747.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g5.6320.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:396876..397661 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0030154cell differentiation
GO:0007275multicellular organism development
Vocabulary: INTERPRO
TermDefinition
IPR029404DUF_TPD
Homology
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|585110020|gb|EWM27747.1| (hypothetical protein Naga_100034g5 [Nannochloropsis gaditana])

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MSLPRAEERPESQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPVEKLVLLNGDVLERM 261
            MSLPRAEERPESQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPVEKLVLLNGDVLERM
Sbjct:    1 MSLPRAEERPESQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPVEKLVLLNGDVLERM 261          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|298711158|emb|CBJ32383.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 181.415 bits (459), Expect = 1.274e-52
Identity = 104/252 (41.27%), Postives = 149/252 (59.13%), Query Frame = 0
Query:   13 QDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARR--LCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQ----ECHVVVIDDFPPPVEKLVLLNGDVL 258
            + +  DAL S+R Q   RH++ V    ++    +  QY  G  I +IAR+  L Y PYL+AR+LV  L        + +LMR P LI + RLRREV  CI+ DRD+SP  DRV R +G +YE  LQ +LRA  + FE E+ LR +G  KTPD+ L  P+ V     +  +V+WIDSKA++G   T+  E   Q+  YVNR+GPG V++WFG+   V+ L+S +    +  ++V  DFP P+   +L +G VL
Sbjct:   31 ESLPYDALQSLRRQMFSRHIRKVDWRCKQRTKEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAA---IAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVIVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGY---VETLVSPEFDGYKKDIMVKADFPSPI---MLPDGQVL 273          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|219112087|ref|XP_002177795.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410680|gb|EEC50609.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 154.451 bits (389), Expect = 2.187e-41
Identity = 93/260 (35.77%), Postives = 137/260 (52.69%), Query Frame = 0
Query:   29 VRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIAN-------------------------HRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGV----VDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPVEKLVLLNGDVLE 259
            V HVK  S   ++ +     +Y AG +I E+A++  +PPYLLAR +VE +  + +R+ +TE MR P  I +                          R+  EV   I  D  + P  DR   ++G+++E  L+  L    +PFE EA LR+RG  KTPDV L+ PLGV     D   +  VV WIDSKAL+G  +T +  VLPQ   Y++RFGPG +++WFG  P ++ L   Q   V+   + P    +L+L  GD++E
Sbjct:   84 VIHVKRQSSAIKKSLGNLADKYMAGSTIVELAKKENFPPYLLARWMVETITSINSRSALTEAMREPATILDPSVILPDYKESESVRPSCSSDSSVPSRISLEVQEAINADPMYGPLHDRERHTVGVEFEVVLEHLLSTRGLPFESEAELRSRGTAKTPDVLLTAPLGVPVRDKDGNEEWKVVCWIDSKALFGDVQTHQTSVLPQAETYLHRFGPGMIIYWFGHAP-LERLDDAQGDLVIQGWELP---TRLMLPTGDIVE 339          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|675207683|ref|XP_008912726.1| (hypothetical protein PPTG_16713 [Phytophthora parasitica INRA-310] >gi|567950107|gb|ETK75826.1| hypothetical protein L915_17623 [Phytophthora parasitica] >gi|568087170|gb|ETN02045.1| hypothetical protein PPTG_16713 [Phytophthora parasitica INRA-310] >gi|570316366|gb|ETO64314.1| hypothetical protein F444_18129 [Phytophthora parasitica P1976] >gi|570940133|gb|ETP05390.1| hypothetical protein F441_17989 [Phytophthora parasitica CJ01A1] >gi|570970409|gb|ETP33528.1| hypothetical protein F442_17951 [Phytophthora parasitica P10297])

HSP 1 Score: 152.14 bits (383), Expect = 7.085e-41
Identity = 97/254 (38.19%), Postives = 144/254 (56.69%), Query Frame = 0
Query:   15 VSLDALLSIRHQRLVRHVKAVSGDHRRH--VLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVG-TRTKVTELMRA-----PHLIA---NHR---------LRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDA-CGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPV 247
            VS +    I+ Q L    ++    HR+   +  Y  +Y AG+S+ +IA+ + + P ++AR+L++   K G ++T ++ L +        L A   NHR         + RE+  CI+ D   SP ADR+  ++G++YE  L   LR   + FE E MLR +GL KTPDVRL +P+GV  +  GK HVVNWIDSKA++G R T E E   Q+  YVNR+GPG V++WFG    V EL S  +  +++ D FP  +
Sbjct:   25 VSEETFSVIKRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKSVSFSPCMMARVLLD--AKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGH---VAELSS--DSDILITDTFPQEI 271          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|568038181|gb|ETM35722.1| (hypothetical protein L914_17420 [Phytophthora parasitica])

HSP 1 Score: 152.14 bits (383), Expect = 8.494e-41
Identity = 97/258 (37.60%), Postives = 144/258 (55.81%), Query Frame = 0
Query:   15 VSLDALLSIRHQRLVRHVKAVSGDHRRH--VLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVG-TRTKVTELMR------------APHLIANHR---------LRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDA-CGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPV 247
            VS +    I+ Q L    ++    HR+   +  Y  +Y AG+S+ +IA+ + + P ++AR+L++   K G ++T ++ L +            AP    NHR         + RE+  CI+ D   SP ADR+  ++G++YE  L   LR   + FE E MLR +GL KTPDVRL +P+GV  +  GK HVVNWIDSKA++G R T E E   Q+  YVNR+GPG V++WFG    V EL S  +  +++ D FP  +
Sbjct:   25 VSEETFSVIKRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKSVSFSPCMMARVLLD--AKYGWSKTTISNLFKEVMKDESKLEADAP----NHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGH---VAELSS--DSDILITDTFPQEI 271          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|566012660|gb|ETI35571.1| (hypothetical protein F443_18108 [Phytophthora parasitica P1569] >gi|567978774|gb|ETL29260.1| hypothetical protein L916_17518 [Phytophthora parasitica])

HSP 1 Score: 150.984 bits (380), Expect = 2.314e-40
Identity = 96/254 (37.80%), Postives = 144/254 (56.69%), Query Frame = 0
Query:   15 VSLDALLSIRHQRLVRHVKAVSGDHRRH--VLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVG-TRTKVTELMRA-----PHLIA---NHR---------LRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDA-CGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPV 247
            VS +    I+ Q L    ++    HR+   +  Y  +Y AG+S+ +IA+ + + P ++AR++++   K G ++T ++ L +        L A   NHR         + RE+  CI+ D   SP ADR+  ++G++YE  L   LR   + FE E MLR +GL KTPDVRL +P+GV  +  GK HVVNWIDSKA++G R T E E   Q+  YVNR+GPG V++WFG    V EL S  +  +++ D FP  +
Sbjct:   25 VSEETFSVIKRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKSVSFSPCMMARVVLD--AKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGH---VAELSS--DSDILITDTFPQEI 271          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|568008249|gb|ETL82470.1| (hypothetical protein L917_17359 [Phytophthora parasitica])

HSP 1 Score: 147.517 bits (371), Expect = 4.765e-39
Identity = 95/254 (37.40%), Postives = 143/254 (56.30%), Query Frame = 0
Query:   15 VSLDALLSIRHQRLVRHVKAVSGDHRRH--VLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVG-TRTKVTELMRA-----PHLIA---NHR---------LRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDA-CGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPV 247
            VS +    I+ Q L    ++    HR+   +  Y  +Y AG+S+ +IA+ + + P ++AR++++   K G ++T ++ L +        L A   NHR         + RE+  CI+ D   SP ADR+  ++G++YE  L   LR   + FE E MLR +GL KTPDVRL +P+GV  +  GK  VVNWIDSKA++G R T E E   Q+  YVNR+GPG V++WFG    V EL S  +  +++ D FP  +
Sbjct:   25 VSEETFSVIKRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKSVSFSPCMMARVVLD--AKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLRVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGH---VAELSS--DSDILITDTFPQEI 271          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|970661999|gb|KUF99420.1| (hypothetical protein AM587_10008799 [Phytophthora nicotianae])

HSP 1 Score: 150.599 bits (379), Expect = 1.795e-38
Identity = 97/254 (38.19%), Postives = 144/254 (56.69%), Query Frame = 0
Query:   15 VSLDALLSIRHQRLVRHVKAVSGDHRRH--VLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVG-TRTKVTELMRA-----PHLIA---NHR---------LRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDA-CGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPV 247
            VS +    I+ Q L    ++    HR+   +  Y  +Y AG+S+ +IA+ + + P ++AR+L++   K G ++T ++ L +        L A   NHR         + RE+  CI+ D   SP ADR+  ++G++YE  L   LR   + FE E MLR +GL KTPDVRL +P+GV  +  GK HVVNWIDSKA++G R T E E   Q+  YVNR+GPG V++WFG    V EL S  +  +++ D FP  +
Sbjct:  256 VSEETFSVIKRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKSVSFSPCMMARVLLD--AKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGH---VAELSS--DSDILITDTFPQEI 502          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|1207920669|ref|XP_021349266.1| (uncharacterized protein C15orf41-like [Mizuhopecten yessoensis] >gi|1205905295|gb|OWF52494.1| Uncharacterized protein C15orf41 [Mizuhopecten yessoensis])

HSP 1 Score: 143.665 bits (361), Expect = 5.231e-38
Identity = 95/260 (36.54%), Postives = 134/260 (51.54%), Query Frame = 0
Query:   10 PESQDVSLDALLSIRHQRLVRHVKAVSGDHRR--HVLAYCRQYEAG------QSIHEIARRLCYPPYLLARMLVE---VLCKVGT----RTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFPPPVEKLVLLN 254
            P   +VS+ AL SI  Q   + ++     H        Y  +Y AG        I  IAR +   P LL+RM++E      K G     R++VT+LM+   LI NH L  E+  CI  D  + P  D++  SIG +YE +L   L +L + +  E  +RA+G  KTPDV+L VP+ V       H+VNWI+SKA +G   +    +  Q   Y NRFGPG V++WFGF   + EL S  E  +++ D FP   E +V LN
Sbjct:   28 PRYPEVSVGALGSIYAQDYQKKMRKTHHLHYSPDTTEYYYDRYRAGVDSGQKHVILSIARNIDLAPSLLSRMILERHLSRTKYGGENPPRSQVTQLMKDTTLIENHVLANEIHECILSDDQYGPLVDKIKHSIGHEYEFKLNSTLDSLQLSYIGEDQMRAKGYDKTPDVKLEVPIAV-----DGHMVNWIESKASFGDEYSHRSYLKDQFWSYWNRFGPGMVIYWFGF---IDELDSNTEKGIILRDSFP---ENIVRLN 276          
BLAST of EWM27747.1 vs. NCBI_GenBank
Match: gi|255069911|ref|XP_002507037.1| (hypothetical protein MICPUN_54817 [Micromonas commoda] >gi|226522312|gb|ACO68295.1| hypothetical protein MICPUN_54817 [Micromonas commoda])

HSP 1 Score: 143.665 bits (361), Expect = 8.699e-38
Identity = 98/254 (38.58%), Postives = 129/254 (50.79%), Query Frame = 0
Query:   15 VSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARRLCYPPYLLARMLVEVLCKVGTRTKVTELMRAPH------------LIANH------------RLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQECHVVVIDDFP 244
            VSLDAL+SI  Q   R +KA  G H R +  + R+Y AG+ I ++A  + +PP  L R+LVE L  VG +     L+R PH              A+H            R+R +V  C+A D   SP  D    S G +YE  L+ +L AL +PF  E  LRA G  KTPDV+L +P+ V     +  VVNWIDSKA +            Q   YV+RFGPG VV+W G    + E  S     V+V+DDFP
Sbjct:   34 VSLDALVSICAQESSRRIKAHHGRHARAISDHARRYLAGEDIFDVAHAVDFPPCQLMRLLVEHLLGVGHKA-AGALIRDPHGRVPIHPPPESPAGAHHADDPVAGAALCERIRFDVERCVAWDHVASPAVDASRHSAGREYEDLLEEKLNALGVPFVSEGSLRAEGHAKTPDVKLELPIAV-----RGRVVNWIDSKASFCDPIVHYERGAEQFQGYVDRFGPGMVVYWLGVVDEIAE-ESESRGDVLVVDDFP 280          
The following BLAST results are available for this feature:
BLAST of EWM27747.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110020|gb|EWM27747.1|0.000e+0100.00hypothetical protein Naga_100034g5 [Nannochloropsi... [more]
gi|298711158|emb|CBJ32383.1|1.274e-5241.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|219112087|ref|XP_002177795.1|2.187e-4135.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|675207683|ref|XP_008912726.1|7.085e-4138.19hypothetical protein PPTG_16713 [Phytophthora para... [more]
gi|568038181|gb|ETM35722.1|8.494e-4137.60hypothetical protein L914_17420 [Phytophthora para... [more]
gi|566012660|gb|ETI35571.1|2.314e-4037.80hypothetical protein F443_18108 [Phytophthora para... [more]
gi|568008249|gb|ETL82470.1|4.765e-3937.40hypothetical protein L917_17359 [Phytophthora para... [more]
gi|970661999|gb|KUF99420.1|1.795e-3838.19hypothetical protein AM587_10008799 [Phytophthora ... [more]
gi|1207920669|ref|XP_021349266.1|5.231e-3836.54uncharacterized protein C15orf41-like [Mizuhopecte... [more]
gi|255069911|ref|XP_002507037.1|8.699e-3838.58hypothetical protein MICPUN_54817 [Micromonas comm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2974rna2974Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications