EWM27730.1, cds2943 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|585110003|gb|EWM27730.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0 Query: 1 MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHSRKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS 338 MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHSRKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS Sbjct: 1 MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHSRKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS 338
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|497470356|ref|WP_009784554.1| (short-chain dehydrogenase [Lyngbya sp. PCC 8106] >gi|119455682|gb|EAW36818.1| Short-chain dehydrogenase/reductase (SDR) superfamily protein [Lyngbya sp. PCC 8106]) HSP 1 Score: 189.889 bits (481), Expect = 1.424e-55 Identity = 105/189 (55.56%), Postives = 131/189 (69.31%), Query Frame = 0 Query: 94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVE----EDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKL 278 T +V G NRGIGLE C+QL RGD V+ VCR ASDELKAL + +++ N+DIT E E +RLG D + +D L NAGI +E ++ L++ I R FE NA+GPLR Q LP L+ SKV+++TSRMGS+EDNTSGGSYGYRMSK AL++ GKSLS DL + IAV +LHPG VKT MT Sbjct: 1 MATYLVTGANRGIGLEYCRQLQRRGDDVIAVCRSASDELKALNI-EIITNIDITSESCISELVKRLG-DRM--IDVLINNAGI---VERISLDNLDFESIRRQFEINAIGPLRLTQMLLPKLRNSSKVIIMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLSHDLKPRQIAVAILHPGLVKTRMTNF 182
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|639207123|ref|WP_024545388.1| (short-chain dehydrogenase [Synechococcus sp. NKBG15041c]) HSP 1 Score: 187.578 bits (475), Expect = 9.508e-55 Identity = 104/211 (49.29%), Postives = 140/211 (66.35%), Query Frame = 0 Query: 96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGT-VDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIK 305 T ++ G NRGIGLE C+QL +GDRV+ VCR S+EL LG+ V ++D+T + +RL G +D L NAGI + ++ +E L+ I R FE NA+ PLR QS LP+L+ GSKV+L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL +GIAV +LHPG VKT M + ISPA + Q L ++++ Sbjct: 3 TYLITGANRGIGLEYCRQLQAQGDRVIAVCRTPSEELLQLGI-TVKSDVDLTNPDAVQRLTQSLQGEMIDVLINNAGILERVD---LENLDCDSIRRQFEVNAIAPLRFTQSLLPNLQAGSKVILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLRPRGIAVGILHPGLVKTRMINF---REDAISPAIAVQGLLDRIQALNLE 206
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|1143527854|dbj|BAW95451.1| (short-chain dehydrogenase/reductase (SDR) superfamily protein [Synechococcus sp. NIES-970]) HSP 1 Score: 187.193 bits (474), Expect = 1.495e-54 Identity = 103/199 (51.76%), Postives = 135/199 (67.84%), Query Frame = 0 Query: 96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGT-VDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293 T ++ G NRGIGLE C+QL +GDRV+ VCR S+EL LG+ V ++D+T + +RL G +D L NAGI + ++ +E L+ I R FE NA+ PLR QS LP+L+ GSKV+L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL +GIAV +LHPG VKT M + ISPA + Q Sbjct: 3 TYLITGANRGIGLEYCRQLQAQGDRVIAVCRTPSEELLQLGI-TVKSDVDLTNPDAVQRLTQALQGEMIDVLINNAGILERVD---LENLDCDSIRRQFEVNAIAPLRFTQSLLPNLQAGSKVILMTSRMGSIEDNTSGGSYGYRMSKVALSMTGKSLAIDLRPRGIAVGILHPGLVKTRMINF---REDAISPAIAVQ 194
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|654348523|ref|WP_027841892.1| (short-chain dehydrogenase [Mastigocoleus testarum] >gi|959129988|gb|KST65232.1| short-chain dehydrogenase [Mastigocoleus testarum BC008]) HSP 1 Score: 186.037 bits (471), Expect = 3.393e-54 Identity = 102/186 (54.84%), Postives = 126/186 (67.74%), Query Frame = 0 Query: 94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG-TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKL 278 T +V G NRGIGLE C QL RGD V+ VCR ASDELK LG+ +V ++DIT E L G +D L NAGI +E ++ L++ I R FE NA+GPLR Q+ LP+LK GSKV+++TSRMGS++DNTSGG YGYRMSK A+++ GKSLS DL KGI V +LHPG VKT MT Sbjct: 1 MATYLVTGANRGIGLEYCHQLKERGDDVIAVCRSASDELKNLGI-RVETDIDITDESSVANLLKRLDGKPIDVLINNAGI---VERMGLDNLDFESIRRQFEVNAIGPLRLTQALLPNLKSGSKVIMMTSRMGSIDDNTSGGQYGYRMSKVAMSMAGKSLSEDLKSKGIPVAILHPGLVKTRMTNF 182
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|1047310969|ref|WP_065709851.1| (short-chain dehydrogenase [Synechococcus sp. PCC 7117] >gi|1046567637|gb|ANV86073.1| short-chain dehydrogenase [Synechococcus sp. PCC 7117]) HSP 1 Score: 185.267 bits (469), Expect = 7.952e-54 Identity = 102/199 (51.26%), Postives = 140/199 (70.35%), Query Frame = 0 Query: 96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG-TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293 T ++ G NRGIGLE C+QL+ +GDRV+ VCR S+EL LG+ V ++D+T + ++L D G T+D L NAGI + ++ ++ L+ I R FE NA+ PLR Q+ L +LK GSK++L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL +GIAV +LHPG VKT M + + E G ISPA + + Sbjct: 3 TYLITGANRGIGLEYCRQLNAQGDRVIAVCRTPSEELLQLGV-TVKADVDLTNPDAVKQLAQDLQGETIDVLINNAGILERVD---LDQLDVDSIRRQFEVNAIAPLRFTQALLANLKSGSKIILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLKPRGIAVGILHPGLVKTRM--INFREDG-ISPAVAVK 194
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|553729271|ref|WP_023063964.1| (short-chain dehydrogenase/reductase [Lyngbya aestuarii] >gi|550818518|gb|ERT09902.1| short chain dehydrogenase family protein [Lyngbya aestuarii BL J]) HSP 1 Score: 185.267 bits (469), Expect = 9.148e-54 Identity = 102/189 (53.97%), Postives = 129/189 (68.25%), Query Frame = 0 Query: 94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVE----EDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKL 278 T +V G NRGIGLE C+QL RGD V+ VCR ASDELK L + ++ ++DIT E E +RL +D L NAGI +E ++ L++ I + FE NA+GPLR + LP+LK GSKV+++TSRMGS+EDNTSGGSYGYRMSK AL++ GKSLSLDL + IAV +LHPG VKT MT Sbjct: 1 MATYLVTGANRGIGLEYCRQLQRRGDDVIAVCRSASDELKNLNV-QIETDVDITSETSISELLKRLSDR---PIDVLINNAGI---VERISLDNLDFESIRKQFEVNAIGPLRFTHALLPNLKPGSKVIIMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLSLDLKPRQIAVAILHPGLVKTRMTNF 182
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|1047316174|ref|WP_065712841.1| (short-chain dehydrogenase [Synechococcus sp. PCC 7003] >gi|1046564552|gb|ANV82991.1| short-chain dehydrogenase [Synechococcus sp. PCC 7003]) HSP 1 Score: 185.267 bits (469), Expect = 9.449e-54 Identity = 103/199 (51.76%), Postives = 137/199 (68.84%), Query Frame = 0 Query: 96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGAD-NLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293 T ++ G NRGI LE C+QL +GDRV+ CR S+EL LG+ V ++D+T + ++L D T+D L NAGI IE ++ L++ I R FE NA+GPLR Q+ LP+ K GSKV+L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL +GIAV +LHPG VKT M + + E G ISPA + + Sbjct: 3 TYLITGANRGIVLEYCRQLKAQGDRVIAACRTPSEELLQLGV-TVKADVDLTNPDVVKQLAQDLQAETIDVLINNAGI---IERVNLDNLDFESIRRQFEVNALGPLRFTQALLPNFKSGSKVILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLKPQGIAVGILHPGLVKTRM--INFREDG-ISPAVAVK 194
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|518335530|ref|WP_019505737.1| (short-chain dehydrogenase [Pleurocapsa sp. PCC 7319]) HSP 1 Score: 184.882 bits (468), Expect = 1.211e-53 Identity = 100/182 (54.95%), Postives = 128/182 (70.33%), Query Frame = 0 Query: 96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGT-VDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMT 276 T +V G NRGIGLE C+QL RG+ V+ VCR ASDEL+ LG+ + ++DIT E L G +D L NAGI +E +E L++ I R FE NA+GPLR Q+ LP+LK+GSK++++TSRMGS++DNTSGGSYGYRMSK AL++ GKSL+ DL K IAV +LHPG VKT MT Sbjct: 3 TYLVTGANRGIGLEYCRQLTERGNNVIAVCRSASDELENLGI-SIETDVDITSPESIAHLVKRLDGQLIDVLINNAGI---VERVSLESLDFNSIRRQFEVNALGPLRLTQALLPNLKKGSKIIMMTSRMGSIDDNTSGGSYGYRMSKVALSMAGKSLAHDLRSKEIAVAILHPGLVKTRMT 180
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|501262707|ref|WP_012305725.1| (MULTISPECIES: short-chain dehydrogenase [Synechococcus] >gi|169884388|gb|ACA98101.1| Short-chain dehydrogenase/reductase (SDR) superfamily [Synechococcus sp. PCC 7002] >gi|1184394318|emb|SMH43110.1| Short-chain dehydrogenase [Synechococcus sp. OG1] >gi|1191923036|emb|SMQ79331.1| Short-chain dehydrogenase [Synechococcus sp. 7002]) HSP 1 Score: 184.496 bits (467), Expect = 1.454e-53 Identity = 102/201 (50.75%), Postives = 139/201 (69.15%), Query Frame = 0 Query: 94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG-TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293 +T +V G NRGIGLE C+QL +GDRV+ VCR S+EL LG+ V ++D+T + ++L D G T+D L NAGI + ++ ++ L+ I R FE NA+ PLR Q+ L +LK GSK++L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL +GIAV +LHPG VKT M + + E G ISP + + Sbjct: 1 MSTYLVTGANRGIGLEYCRQLKAQGDRVIAVCRTPSEELLQLGV-TVKADVDLTNPDAVKQLAQDLQGETIDVLINNAGILERVD---LDQLDVDSIRRQFEVNAIAPLRFTQALLANLKSGSKIILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLKPRGIAVGILHPGLVKTRM--INFREDG-ISPTVAVE 194 The following BLAST results are available for this feature:
BLAST of EWM27730.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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