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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100034g29.6303.mrna |
| Orig protein id | gnl|cribi|Naga_100034g29.6303 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:337574..338937 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2951 ID=rna2951|Name=rna2951|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp
ATGGGGCAACTCATGAGCATCCGAGGATGTGCGGGAGGGAGTGGTGGGGA
CATTGGCGCTGACGAGCTCCTCCTGGATCATACATGCAACGATGTGACTT
CAACAGCAGGAAGAACGCCCACGGATGATGTTCAAGGGGAAAAGCTGCAT
CAAATCATGAAAGGACTTCTACAGGAAAGCGTTTGTTGTATCCGTGCTGT
GCGTGAGTATCAAGACAATACTGAGCTTCTGCGCGCGGCGATGAAGGCGC
CAAGTAATGAGGCGCTTCAGTTGCAGGCTTTTGCATGCCTTATGCCTAGT
GTTGCAAACATCAAGAGGGCTCACGCTCTCTCAATATGCCTTAGTCAAGA
GCTGCCACAACTTTTAAGCTATCTCATAGCACGGCGAAACAATCTGCGGA
GGAACCACGCGCTTATGAAGGTATTGGCTGATATACTGGATTTCTCTCTT
TCATTCGACTTCGAGAAGATGAGAAAACCCTCCATACAGAATGACTTCTC
GTACTTCCGGCGATATTTGAACAAAATGGCACCCAGAATGCCGGACGGTG
AGGTGCAAGTCCAAGAAGCAGAGGCAGGAATGATATCTCTCTTCATTGCG
CAAGGTTTGCCGATGACTGTGACAGTCGAGAAGGCTCTTAGATCTCTTGG
GGAGGTGTCTGGCAGCCCTGACTCGCTCTGTCATGCCCTGCAGCTTGTAG
GGCTGCTGGCGAATGTGTCGTGTGACTTGGCTTTGAGACCAGGATTGGGC
GTTGACCTTCGCCGTTTCGCTTTGCGGGTCATGACCTCGTCTGTTGTTAT
TTATGATCGGGTGAGCGAGGCGGGAGTGTTTACCCGCCGGTCACCAGTCC
GTACGCGTAAGTGCCTCCGCATCCTTCGGAAGGAGGAAGAAGCGTCAAGA
AGCGACGCGATGTTGGCGCGGCAGCTCCTGGATTCGGTGAAGTATTCCAC
TCTCCATTACAAAGATTGTTCCACACCCAGCTATATTCGTAGCCTTTTGA
ATGATTGA back to topprotein sequence of rna2951 >rna2951-protein ID=rna2951-protein|Name=rna2951|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHS
RKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVI
GCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEE
DTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGP
LRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGK
SLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYM
GMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS back to topmRNA from alignment at CM002460.1:337574..338937+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2951 ID=rna2951|Name=rna2951|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp|location=Sequence derived from alignment at CM002460.1:337574..338937+ (Nannochloropsis gaditana)
ATGGGCAATAAAGCTCTgggggcgagaaagagaCAGCTTGGAGCCGTAAA
TCATGTATGACTTGGTCAATCTTCTATTGCGTTGGTCCTCACCTTTTGTC
GTGGAACTAGGCAAGCAAAGATTAATGCATGCTCTTTAGGGTGGCTGATG
TGCATTTTCCAGGTCACTTTTCGAGCTATCCATTTCCTGGATGGAAAAGT
TCGTGATGTTCATAGTCGCAAGCACACTATTTGTACAGAACGGAACATAG
GACGTAAATGTTAAACCCCTTTTCTCTGTGAGCTGGAAATCAGCGACGTC
GCTGTTACAAAGTGGAGAAAGCCTGGCCATAGTTTCACATGTGACAACAC
TGCTTGGCTGGTCTAGCATTGGTTCGTACAAGCGCTCAATTCGAATCTCC
TATTTCTCCAGATCTGGTAACAAGAGCTGAGATGAAGGGTATCTCATCAG
CATTCACGACATCCATTGTTATCGGGTGTAATCGTGGCATCGGGCTTGAG
CTTTGCAAGCAGCTTCACATCCGAGGAGATCGCGTAGTTGGAGTTTGCAG
GAAAGCATCTGATGAGCTAAAAGCCCTAGGACTGTGGAAAGTGATGGAGA
ACATGGACATTACAGTCGAAGAGGACACGCGCCGTCTGGGCGCAGATAAC
TTGGGCACGGTGGACAATCTGTGGCTTAATGCCGGAATCGGTGATGGCAT
TGAAGACAGTTTAGTGGAAGGTCTGAATTACGGTCAGATTCTCCGATCTT
TCGAGACAAACGCAGTCGGCCCACTTCGTTGCGTacaatccttccttcct
agTCTAAAACGAGGTAGTAAGGTGAGTCTATCTGAGGCTCTATCTACGTC
GCCGGAAGCCGAGGCCGATTCAATAGATAACAGGTTAAAGTGTGTGCAGG
ATGAAAACTTTTCATTTCTTCAAAACAGGTATTACTTGTGACAAGCCGCA
TGGGCTCGGTCGAAGATAATACGTCTGGGGGATCCTACGGCTATAGGATG
AGCAAAGCAGCTTTAAATATAGTGGGTAAAAGCTTGTCATTGGACCTGCT
GCATAAAGGCATCGCCGTACTGGTTTTGCATCCCGGATTTGTGAAAACCG
ATATGACGAAACTGTATTGGGGCGAAAAAGGCATCATTTCTCCAGCTACG
AGTGCACAAGGTCTGCAATAGTATGTATGAACTATGCGCTTAGTTTTATA
GAGATTTATATTTAAATCAATATCAAGAAGATCTACATTACTACATGGGC
ATGAGCATCAAGCGATGGATGGGCTTCATGGAAATATGTAGAAAGTTTCG
CACATGCTGTGAATCATATTATTTGTTACCTATCGGCTCGTGCAACTGCG
TAGCAAACTCTTAA back to topCoding sequence (CDS) from alignment at CM002460.1:337574..338937+ >rna2951 ID=rna2951|Name=rna2951|organism=Nannochloropsis gaditana|type=CDS|length=5085bp|location=Sequence derived from alignment at CM002460.1:337574..338937+ (Nannochloropsis gaditana)
ATGGGCAATAAAGCTCTgggggcgagaaagagaCAGCTTGGAGCCGTAAA
TCATATTAATGCATGCTCTTTAGGGTGGCTGATGTGCATTTTCCAGGTCA
CTTTTCGAGCTATCCATTTCCTGGATGGAAAAGTTCGTGATGTTCATAGT
CGCAAGCACACTATTTGTACAGAACGGAACATAGGACGTAAATCATTGGT
TCGTACAAGCGCTCAATTCGAATCTCCTATTTCTCCAGATCTGGTAACAA
GAGCTGAGATGAAGGGTATCTCATCAGCATTCACGACATCCATTGTTATC
GGGTGTAATCGTGGCATCGGGCTTGAGCTTTGCAAGCAGCTTCACATCCG
AGGAGATCGCGTAGTTGGAGTTTGCAGGAAAGCATCTGATGAGCTAAAAG
CCCTAGGACTGTGGAAAGTGATGGAGAACATGGACATTACAGTCGAAGAG
GACACGCGCCGTCTGGGCGCAGATAACTTGGGCACGGTGGACAATCTGTG
GCTTAATGCCGGAATCGGTGATGGCATTGAAGACAGTTTAGTGGAAGGTC
TGAATTACGGTCAGATTCTCCGATCTTTCGAGACAAACGCAGTCGGCCCA
CTTCGTTGCGTacaatccttccttcctagTCTAAAACGAGGTAGTAAGGT
ATTACTTGTGACAAGCCGCATGGGCTCGGTCGAAGATAATACGTCTGGGG
GATCCTACGGCTATAGGATGAGCAAAGCAGCTTTAAATATAGTGGGTAAA
AGCTTGTCATTGGACCTGCTGCATAAAGGCATCGCCGTACTGGTTTTGCA
TCCCGGATTTGTGAAAACCGATATGACGAAACTGTATTGGGGCGAAAAAG
GCATCATTTCTCCAGCTACGAGTGCACAAGAAGATCTACATTACTACATG
GGCATGAGCATCAAGCGATGGATGGGCTTCATGGAAATATGTAGAAAGTT
TCGCACATGCTGTGAATCATATTATTTGTTACCTATCGGCTCGTGCAACT
GCGTAGCAAACTCTTAAATGGGCAATAAAGCTCTgggggcgagaaagaga
CAGCTTGGAGCCGTAAATCATATTAATGCATGCTCTTTAGGGTGGCTGAT
GTGCATTTTCCAGGTCACTTTTCGAGCTATCCATTTCCTGGATGGAAAAG
TTCGTGATGTTCATAGTCGCAAGCACACTATTTGTACAGAACGGAACATA
GGACGTAAATCATTGGTTCGTACAAGCGCTCAATTCGAATCTCCTATTTC
TCCAGATCTGGTAACAAGAGCTGAGATGAAGGGTATCTCATCAGCATTCA
CGACATCCATTGTTATCGGGTGTAATCGTGGCATCGGGCTTGAGCTTTGC
AAGCAGCTTCACATCCGAGGAGATCGCGTAGTTGGAGTTTGCAGGAAAGC
ATCTGATGAGCTAAAAGCCCTAGGACTGTGGAAAGTGATGGAGAACATGG
ACATTACAGTCGAAGAGGACACGCGCCGTCTGGGCGCAGATAACTTGGGC
ACGGTGGACAATCTGTGGCTTAATGCCGGAATCGGTGATGGCATTGAAGA
CAGTTTAGTGGAAGGTCTGAATTACGGTCAGATTCTCCGATCTTTCGAGA
CAAACGCAGTCGGCCCACTTCGTTGCGTacaatccttccttcctagTCTA
AAACGAGGTAGTAAGGTATTACTTGTGACAAGCCGCATGGGCTCGGTCGA
AGATAATACGTCTGGGGGATCCTACGGCTATAGGATGAGCAAAGCAGCTT
TAAATATAGTGGGTAAAAGCTTGTCATTGGACCTGCTGCATAAAGGCATC
GCCGTACTGGTTTTGCATCCCGGATTTGTGAAAACCGATATGACGAAACT
GTATTGGGGCGAAAAAGGCATCATTTCTCCAGCTACGAGTGCACAAGAAG
ATCTACATTACTACATGGGCATGAGCATCAAGCGATGGATGGGCTTCATG
GAAATATGTAGAAAGTTTCGCACATGCTGTGAATCATATTATTTGTTACC
TATCGGCTCGTGCAACTGCGTAGCAAACTCTTAAATGGGCAATAAAGCTC
TgggggcgagaaagagaCAGCTTGGAGCCGTAAATCATATTAATGCATGC
TCTTTAGGGTGGCTGATGTGCATTTTCCAGGTCACTTTTCGAGCTATCCA
TTTCCTGGATGGAAAAGTTCGTGATGTTCATAGTCGCAAGCACACTATTT
GTACAGAACGGAACATAGGACGTAAATCATTGGTTCGTACAAGCGCTCAA
TTCGAATCTCCTATTTCTCCAGATCTGGTAACAAGAGCTGAGATGAAGGG
TATCTCATCAGCATTCACGACATCCATTGTTATCGGGTGTAATCGTGGCA
TCGGGCTTGAGCTTTGCAAGCAGCTTCACATCCGAGGAGATCGCGTAGTT
GGAGTTTGCAGGAAAGCATCTGATGAGCTAAAAGCCCTAGGACTGTGGAA
AGTGATGGAGAACATGGACATTACAGTCGAAGAGGACACGCGCCGTCTGG
GCGCAGATAACTTGGGCACGGTGGACAATCTGTGGCTTAATGCCGGAATC
GGTGATGGCATTGAAGACAGTTTAGTGGAAGGTCTGAATTACGGTCAGAT
TCTCCGATCTTTCGAGACAAACGCAGTCGGCCCACTTCGTTGCGTacaat
ccttccttcctagTCTAAAACGAGGTAGTAAGGTATTACTTGTGACAAGC
CGCATGGGCTCGGTCGAAGATAATACGTCTGGGGGATCCTACGGCTATAG
GATGAGCAAAGCAGCTTTAAATATAGTGGGTAAAAGCTTGTCATTGGACC
TGCTGCATAAAGGCATCGCCGTACTGGTTTTGCATCCCGGATTTGTGAAA
ACCGATATGACGAAACTGTATTGGGGCGAAAAAGGCATCATTTCTCCAGC
TACGAGTGCACAAGAAGATCTACATTACTACATGGGCATGAGCATCAAGC
GATGGATGGGCTTCATGGAAATATGTAGAAAGTTTCGCACATGCTGTGAA
TCATATTATTTGTTACCTATCGGCTCGTGCAACTGCGTAGCAAACTCTTA
AATGGGCAATAAAGCTCTgggggcgagaaagagaCAGCTTGGAGCCGTAA
ATCATATTAATGCATGCTCTTTAGGGTGGCTGATGTGCATTTTCCAGGTC
ACTTTTCGAGCTATCCATTTCCTGGATGGAAAAGTTCGTGATGTTCATAG
TCGCAAGCACACTATTTGTACAGAACGGAACATAGGACGTAAATCATTGG
TTCGTACAAGCGCTCAATTCGAATCTCCTATTTCTCCAGATCTGGTAACA
AGAGCTGAGATGAAGGGTATCTCATCAGCATTCACGACATCCATTGTTAT
CGGGTGTAATCGTGGCATCGGGCTTGAGCTTTGCAAGCAGCTTCACATCC
GAGGAGATCGCGTAGTTGGAGTTTGCAGGAAAGCATCTGATGAGCTAAAA
GCCCTAGGACTGTGGAAAGTGATGGAGAACATGGACATTACAGTCGAAGA
GGACACGCGCCGTCTGGGCGCAGATAACTTGGGCACGGTGGACAATCTGT
GGCTTAATGCCGGAATCGGTGATGGCATTGAAGACAGTTTAGTGGAAGGT
CTGAATTACGGTCAGATTCTCCGATCTTTCGAGACAAACGCAGTCGGCCC
ACTTCGTTGCGTacaatccttccttcctagTCTAAAACGAGGTAGTAAGG
TATTACTTGTGACAAGCCGCATGGGCTCGGTCGAAGATAATACGTCTGGG
GGATCCTACGGCTATAGGATGAGCAAAGCAGCTTTAAATATAGTGGGTAA
AAGCTTGTCATTGGACCTGCTGCATAAAGGCATCGCCGTACTGGTTTTGC
ATCCCGGATTTGTGAAAACCGATATGACGAAACTGTATTGGGGCGAAAAA
GGCATCATTTCTCCAGCTACGAGTGCACAAGAAGATCTACATTACTACAT
GGGCATGAGCATCAAGCGATGGATGGGCTTCATGGAAATATGTAGAAAGT
TTCGCACATGCTGTGAATCATATTATTTGTTACCTATCGGCTCGTGCAAC
TGCGTAGCAAACTCTTAAATGGGCAATAAAGCTCTgggggcgagaaagag
aCAGCTTGGAGCCGTAAATCATATTAATGCATGCTCTTTAGGGTGGCTGA
TGTGCATTTTCCAGGTCACTTTTCGAGCTATCCATTTCCTGGATGGAAAA
GTTCGTGATGTTCATAGTCGCAAGCACACTATTTGTACAGAACGGAACAT
AGGACGTAAATCATTGGTTCGTACAAGCGCTCAATTCGAATCTCCTATTT
CTCCAGATCTGGTAACAAGAGCTGAGATGAAGGGTATCTCATCAGCATTC
ACGACATCCATTGTTATCGGGTGTAATCGTGGCATCGGGCTTGAGCTTTG
CAAGCAGCTTCACATCCGAGGAGATCGCGTAGTTGGAGTTTGCAGGAAAG
CATCTGATGAGCTAAAAGCCCTAGGACTGTGGAAAGTGATGGAGAACATG
GACATTACAGTCGAAGAGGACACGCGCCGTCTGGGCGCAGATAACTTGGG
CACGGTGGACAATCTGTGGCTTAATGCCGGAATCGGTGATGGCATTGAAG
ACAGTTTAGTGGAAGGTCTGAATTACGGTCAGATTCTCCGATCTTTCGAG
ACAAACGCAGTCGGCCCACTTCGTTGCGTacaatccttccttcctagTCT
AAAACGAGGTAGTAAGGTATTACTTGTGACAAGCCGCATGGGCTCGGTCG
AAGATAATACGTCTGGGGGATCCTACGGCTATAGGATGAGCAAAGCAGCT
TTAAATATAGTGGGTAAAAGCTTGTCATTGGACCTGCTGCATAAAGGCAT
CGCCGTACTGGTTTTGCATCCCGGATTTGTGAAAACCGATATGACGAAAC
TGTATTGGGGCGAAAAAGGCATCATTTCTCCAGCTACGAGTGCACAAGAA
GATCTACATTACTACATGGGCATGAGCATCAAGCGATGGATGGGCTTCAT
GGAAATATGTAGAAAGTTTCGCACATGCTGTGAATCATATTATTTGTTAC
CTATCGGCTCGTGCAACTGCGTAGCAAACTCTTAA back to top
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