EWM27730.1, cds2943 (CDS) Nannochloropsis gaditana

Overview
NameEWM27730.1
Unique Namecds2943
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:337574..337627 +
Alignment locationCM002460.1:337694..337832 +
Alignment locationCM002460.1:337940..338394 +
Alignment locationCM002460.1:338502..338733 +
Alignment locationCM002460.1:338801..338937 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27730.1
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100034g29.6303.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:337574..337627 +
CM002460.1supercontigCM002460.1:337694..337832 +
CM002460.1supercontigCM002460.1:337940..338394 +
CM002460.1supercontigCM002460.1:338502..338733 +
CM002460.1supercontigCM002460.1:338801..338937 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR002198DH_sc/Rdtase_SDR
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|585110003|gb|EWM27730.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0
Query:    1 MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHSRKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS 338
            MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHSRKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS
Sbjct:    1 MGNKALGARKRQLGAVNHINACSLGWLMCIFQVTFRAIHFLDGKVRDVHSRKHTICTERNIGRKSLVRTSAQFESPISPDLVTRAEMKGISSAFTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIKRWMGFMEICRKFRTCCESYYLLPIGSCNCVANS 338          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|497470356|ref|WP_009784554.1| (short-chain dehydrogenase [Lyngbya sp. PCC 8106] >gi|119455682|gb|EAW36818.1| Short-chain dehydrogenase/reductase (SDR) superfamily protein [Lyngbya sp. PCC 8106])

HSP 1 Score: 189.889 bits (481), Expect = 1.424e-55
Identity = 105/189 (55.56%), Postives = 131/189 (69.31%), Query Frame = 0
Query:   94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVE----EDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKL 278
              T +V G NRGIGLE C+QL  RGD V+ VCR ASDELKAL + +++ N+DIT E    E  +RLG D +  +D L  NAGI   +E   ++ L++  I R FE NA+GPLR  Q  LP L+  SKV+++TSRMGS+EDNTSGGSYGYRMSK AL++ GKSLS DL  + IAV +LHPG VKT MT  
Sbjct:    1 MATYLVTGANRGIGLEYCRQLQRRGDDVIAVCRSASDELKALNI-EIITNIDITSESCISELVKRLG-DRM--IDVLINNAGI---VERISLDNLDFESIRRQFEINAIGPLRLTQMLLPKLRNSSKVIIMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLSHDLKPRQIAVAILHPGLVKTRMTNF 182          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|639207123|ref|WP_024545388.1| (short-chain dehydrogenase [Synechococcus sp. NKBG15041c])

HSP 1 Score: 187.578 bits (475), Expect = 9.508e-55
Identity = 104/211 (49.29%), Postives = 140/211 (66.35%), Query Frame = 0
Query:   96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGT-VDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQEDLHYYMGMSIK 305
            T ++ G NRGIGLE C+QL  +GDRV+ VCR  S+EL  LG+  V  ++D+T  +  +RL     G  +D L  NAGI + ++   +E L+   I R FE NA+ PLR  QS LP+L+ GSKV+L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL  +GIAV +LHPG VKT M       +  ISPA + Q  L     ++++
Sbjct:    3 TYLITGANRGIGLEYCRQLQAQGDRVIAVCRTPSEELLQLGI-TVKSDVDLTNPDAVQRLTQSLQGEMIDVLINNAGILERVD---LENLDCDSIRRQFEVNAIAPLRFTQSLLPNLQAGSKVILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLRPRGIAVGILHPGLVKTRMINF---REDAISPAIAVQGLLDRIQALNLE 206          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|1143527854|dbj|BAW95451.1| (short-chain dehydrogenase/reductase (SDR) superfamily protein [Synechococcus sp. NIES-970])

HSP 1 Score: 187.193 bits (474), Expect = 1.495e-54
Identity = 103/199 (51.76%), Postives = 135/199 (67.84%), Query Frame = 0
Query:   96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGT-VDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293
            T ++ G NRGIGLE C+QL  +GDRV+ VCR  S+EL  LG+  V  ++D+T  +  +RL     G  +D L  NAGI + ++   +E L+   I R FE NA+ PLR  QS LP+L+ GSKV+L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL  +GIAV +LHPG VKT M       +  ISPA + Q
Sbjct:    3 TYLITGANRGIGLEYCRQLQAQGDRVIAVCRTPSEELLQLGI-TVKSDVDLTNPDAVQRLTQALQGEMIDVLINNAGILERVD---LENLDCDSIRRQFEVNAIAPLRFTQSLLPNLQAGSKVILMTSRMGSIEDNTSGGSYGYRMSKVALSMTGKSLAIDLRPRGIAVGILHPGLVKTRMINF---REDAISPAIAVQ 194          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|654348523|ref|WP_027841892.1| (short-chain dehydrogenase [Mastigocoleus testarum] >gi|959129988|gb|KST65232.1| short-chain dehydrogenase [Mastigocoleus testarum BC008])

HSP 1 Score: 186.037 bits (471), Expect = 3.393e-54
Identity = 102/186 (54.84%), Postives = 126/186 (67.74%), Query Frame = 0
Query:   94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG-TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKL 278
              T +V G NRGIGLE C QL  RGD V+ VCR ASDELK LG+ +V  ++DIT E     L     G  +D L  NAGI   +E   ++ L++  I R FE NA+GPLR  Q+ LP+LK GSKV+++TSRMGS++DNTSGG YGYRMSK A+++ GKSLS DL  KGI V +LHPG VKT MT  
Sbjct:    1 MATYLVTGANRGIGLEYCHQLKERGDDVIAVCRSASDELKNLGI-RVETDIDITDESSVANLLKRLDGKPIDVLINNAGI---VERMGLDNLDFESIRRQFEVNAIGPLRLTQALLPNLKSGSKVIMMTSRMGSIDDNTSGGQYGYRMSKVAMSMAGKSLSEDLKSKGIPVAILHPGLVKTRMTNF 182          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|1047310969|ref|WP_065709851.1| (short-chain dehydrogenase [Synechococcus sp. PCC 7117] >gi|1046567637|gb|ANV86073.1| short-chain dehydrogenase [Synechococcus sp. PCC 7117])

HSP 1 Score: 185.267 bits (469), Expect = 7.952e-54
Identity = 102/199 (51.26%), Postives = 140/199 (70.35%), Query Frame = 0
Query:   96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG-TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293
            T ++ G NRGIGLE C+QL+ +GDRV+ VCR  S+EL  LG+  V  ++D+T  +  ++L  D  G T+D L  NAGI + ++   ++ L+   I R FE NA+ PLR  Q+ L +LK GSK++L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL  +GIAV +LHPG VKT M  + + E G ISPA + +
Sbjct:    3 TYLITGANRGIGLEYCRQLNAQGDRVIAVCRTPSEELLQLGV-TVKADVDLTNPDAVKQLAQDLQGETIDVLINNAGILERVD---LDQLDVDSIRRQFEVNAIAPLRFTQALLANLKSGSKIILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLKPRGIAVGILHPGLVKTRM--INFREDG-ISPAVAVK 194          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|553729271|ref|WP_023063964.1| (short-chain dehydrogenase/reductase [Lyngbya aestuarii] >gi|550818518|gb|ERT09902.1| short chain dehydrogenase family protein [Lyngbya aestuarii BL J])

HSP 1 Score: 185.267 bits (469), Expect = 9.148e-54
Identity = 102/189 (53.97%), Postives = 129/189 (68.25%), Query Frame = 0
Query:   94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVE----EDTRRLGADNLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKL 278
              T +V G NRGIGLE C+QL  RGD V+ VCR ASDELK L + ++  ++DIT E    E  +RL       +D L  NAGI   +E   ++ L++  I + FE NA+GPLR   + LP+LK GSKV+++TSRMGS+EDNTSGGSYGYRMSK AL++ GKSLSLDL  + IAV +LHPG VKT MT  
Sbjct:    1 MATYLVTGANRGIGLEYCRQLQRRGDDVIAVCRSASDELKNLNV-QIETDVDITSETSISELLKRLSDR---PIDVLINNAGI---VERISLDNLDFESIRKQFEVNAIGPLRFTHALLPNLKPGSKVIIMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLSLDLKPRQIAVAILHPGLVKTRMTNF 182          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|1047316174|ref|WP_065712841.1| (short-chain dehydrogenase [Synechococcus sp. PCC 7003] >gi|1046564552|gb|ANV82991.1| short-chain dehydrogenase [Synechococcus sp. PCC 7003])

HSP 1 Score: 185.267 bits (469), Expect = 9.449e-54
Identity = 103/199 (51.76%), Postives = 137/199 (68.84%), Query Frame = 0
Query:   96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGAD-NLGTVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293
            T ++ G NRGI LE C+QL  +GDRV+  CR  S+EL  LG+  V  ++D+T  +  ++L  D    T+D L  NAGI   IE   ++ L++  I R FE NA+GPLR  Q+ LP+ K GSKV+L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL  +GIAV +LHPG VKT M  + + E G ISPA + +
Sbjct:    3 TYLITGANRGIVLEYCRQLKAQGDRVIAACRTPSEELLQLGV-TVKADVDLTNPDVVKQLAQDLQAETIDVLINNAGI---IERVNLDNLDFESIRRQFEVNALGPLRFTQALLPNFKSGSKVILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLKPQGIAVGILHPGLVKTRM--INFREDG-ISPAVAVK 194          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|518335530|ref|WP_019505737.1| (short-chain dehydrogenase [Pleurocapsa sp. PCC 7319])

HSP 1 Score: 184.882 bits (468), Expect = 1.211e-53
Identity = 100/182 (54.95%), Postives = 128/182 (70.33%), Query Frame = 0
Query:   96 TSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLGT-VDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMT 276
            T +V G NRGIGLE C+QL  RG+ V+ VCR ASDEL+ LG+  +  ++DIT  E    L     G  +D L  NAGI   +E   +E L++  I R FE NA+GPLR  Q+ LP+LK+GSK++++TSRMGS++DNTSGGSYGYRMSK AL++ GKSL+ DL  K IAV +LHPG VKT MT
Sbjct:    3 TYLVTGANRGIGLEYCRQLTERGNNVIAVCRSASDELENLGI-SIETDVDITSPESIAHLVKRLDGQLIDVLINNAGI---VERVSLESLDFNSIRRQFEVNALGPLRLTQALLPNLKKGSKIIMMTSRMGSIDDNTSGGSYGYRMSKVALSMAGKSLAHDLRSKEIAVAILHPGLVKTRMT 180          
BLAST of EWM27730.1 vs. NCBI_GenBank
Match: gi|501262707|ref|WP_012305725.1| (MULTISPECIES: short-chain dehydrogenase [Synechococcus] >gi|169884388|gb|ACA98101.1| Short-chain dehydrogenase/reductase (SDR) superfamily [Synechococcus sp. PCC 7002] >gi|1184394318|emb|SMH43110.1| Short-chain dehydrogenase [Synechococcus sp. OG1] >gi|1191923036|emb|SMQ79331.1| Short-chain dehydrogenase [Synechococcus sp. 7002])

HSP 1 Score: 184.496 bits (467), Expect = 1.454e-53
Identity = 102/201 (50.75%), Postives = 139/201 (69.15%), Query Frame = 0
Query:   94 FTTSIVIGCNRGIGLELCKQLHIRGDRVVGVCRKASDELKALGLWKVMENMDITVEEDTRRLGADNLG-TVDNLWLNAGIGDGIEDSLVEGLNYGQILRSFETNAVGPLRCVQSFLPSLKRGSKVLLVTSRMGSVEDNTSGGSYGYRMSKAALNIVGKSLSLDLLHKGIAVLVLHPGFVKTDMTKLYWGEKGIISPATSAQ 293
             +T +V G NRGIGLE C+QL  +GDRV+ VCR  S+EL  LG+  V  ++D+T  +  ++L  D  G T+D L  NAGI + ++   ++ L+   I R FE NA+ PLR  Q+ L +LK GSK++L+TSRMGS+EDNTSGGSYGYRMSK AL++ GKSL++DL  +GIAV +LHPG VKT M  + + E G ISP  + +
Sbjct:    1 MSTYLVTGANRGIGLEYCRQLKAQGDRVIAVCRTPSEELLQLGV-TVKADVDLTNPDAVKQLAQDLQGETIDVLINNAGILERVD---LDQLDVDSIRRQFEVNAIAPLRFTQALLANLKSGSKIILMTSRMGSIEDNTSGGSYGYRMSKVALSMAGKSLAIDLKPRGIAVGILHPGLVKTRM--INFREDG-ISPTVAVE 194          
The following BLAST results are available for this feature:
BLAST of EWM27730.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110003|gb|EWM27730.1|0.000e+0100.00short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|497470356|ref|WP_009784554.1|1.424e-5555.56short-chain dehydrogenase [Lyngbya sp. PCC 8106] >... [more]
gi|639207123|ref|WP_024545388.1|9.508e-5549.29short-chain dehydrogenase [Synechococcus sp. NKBG1... [more]
gi|1143527854|dbj|BAW95451.1|1.495e-5451.76short-chain dehydrogenase/reductase (SDR) superfam... [more]
gi|654348523|ref|WP_027841892.1|3.393e-5454.84short-chain dehydrogenase [Mastigocoleus testarum]... [more]
gi|1047310969|ref|WP_065709851.1|7.952e-5451.26short-chain dehydrogenase [Synechococcus sp. PCC 7... [more]
gi|553729271|ref|WP_023063964.1|9.148e-5453.97short-chain dehydrogenase/reductase [Lyngbya aestu... [more]
gi|1047316174|ref|WP_065712841.1|9.449e-5451.76short-chain dehydrogenase [Synechococcus sp. PCC 7... [more]
gi|518335530|ref|WP_019505737.1|1.211e-5354.95short-chain dehydrogenase [Pleurocapsa sp. PCC 731... [more]
gi|501262707|ref|WP_012305725.1|1.454e-5350.75MULTISPECIES: short-chain dehydrogenase [Synechoco... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2951rna2951Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications