EWM27704.1, cds2923 (CDS) Nannochloropsis gaditana

Overview
NameEWM27704.1
Unique Namecds2923
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:301998..302915 -
Alignment locationCM002460.1:301783..301932 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27704.1
ProductCRAL-TRIO domain protein
Orig transcript idgnl|cribi|Naga_100034g49.6277.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:301998..302915 -
CM002460.1supercontigCM002460.1:301783..301932 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011074CRAL/TRIO_N_dom
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|585109977|gb|EWM27704.1| (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0
Query:    1 MAPETSSEATAQVPREQPPARSDTATSHRHSTCHVQQAWCAGDQVATVDSHTTVETLSINGDSSSVEVTSLMERVDISHRPVPSLGNKASSEKNHSSSYFLDLPSVNHKAIFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVHGQIERHSTQRFKVVVAPWNALGLADRRSLLVQPEHPEMSSFIVKITNLL 355
            MAPETSSEATAQVPREQPPARSDTATSHRHSTCHVQQAWCAGDQVATVDSHTTVETLSINGDSSSVEVTSLMERVDISHRPVPSLGNKASSEKNHSSSYFLDLPSVNHKAIFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVHGQIERHSTQRFKVVVAPWNALGLADRRSLLVQPEHPEMSSFIVKITNLL
Sbjct:    1 MAPETSSEATAQVPREQPPARSDTATSHRHSTCHVQQAWCAGDQVATVDSHTTVETLSINGDSSSVEVTSLMERVDISHRPVPSLGNKASSEKNHSSSYFLDLPSVNHKAIFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVHGQIERHSTQRFKVVVAPWNALGLADRRSLLVQPEHPEMSSFIVKITNLL 355          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|585112881|gb|EWM30222.1| (cral trio domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 152.91 bits (385), Expect = 6.497e-41
Identity = 75/197 (38.07%), Postives = 121/197 (61.42%), Query Frame = 0
Query:  111 IFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTAD-GFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVH 306
            +  EL AKI   A    +  ++   +L+R+L+AR+L V +A+ +W    AWR+  +P+++ E   AP L+   VS+ G DK GR C+    RNH+      +  LR  + +LE +T  S +T+  G+I  I D +G G +N+DT L   KPG++ I++EYYPE L +  I++++W+FR+ W +I PF+DE+T+ KVH
Sbjct:   14 VMAELGAKI---AQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVH 207          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|118360174|ref|XP_001013324.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|89295091|gb|EAR93079.1| divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 135.191 bits (339), Expect = 4.801e-33
Identity = 77/211 (36.49%), Postives = 112/211 (53.08%), Query Frame = 0
Query:  102 DLPSVNHKAIFEELLAKITELAP-----EDNVP--PYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKV 305
            DL     KA F EL AK+ E        ED V    Y +++   R+L AR  +V +AF MW   V WR  ++   + EE+ A  L  G     G DKQG PC+    + H     + D  LR  + LLE+   +  +   G ++VI D+EG  +KN D+NLF     L QI+Q+ Y ERL + YILH +W F+ ++A++ PFL  +T+ K+
Sbjct:   16 DLKEKELKA-FNELKAKVVEQCKKMKLDEDQVKFDRYTEDNQCVRLLWAREFKVEKAFEMWKKWVDWRIDFKADEIKEEDVASELQSGKAFWHGMDKQGNPCLVVKVKYHRPGVSSQDVVLRYFLYLLEEGISKCEQAGTGKVSVIWDREGFDKKNFDSNLFSTFKKLNQIMQDNYAERLSTIYILHPNWFFKTIYAVVKPFLTSRTKSKI 225          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|1134886566|gb|OMJ83991.1| (hypothetical protein SteCoe_14977 [Stentor coeruleus])

HSP 1 Score: 130.954 bits (328), Expect = 1.509e-32
Identity = 67/193 (34.72%), Postives = 106/193 (54.92%), Query Frame = 0
Query:  114 ELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVH 306
            EL   I E+  E+    Y ++D+L RVL AR+L+V  A+ MW     WRK Y+   ++EEE   ++  G     G D +GRPC+    R H  +    +  +R ++ L+E+    +     G + VI D+  +   N D NL     GL  +LQ++Y ERLG+ YILH +W++ L++  + P L++KTR K+H
Sbjct:   17 ELTKLIHEITDEEK---YTNQDMLIRVLRARDLKVQPAYEMWQKWYRWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFALEETMRYVIYLVEQGVKLADEKHTGQMCVIYDRGDISSANKDGNLIELGKGLAAMLQDFYAERLGAVYILHVNWLYWLIFQAVKPLLNKKTRNKIH 206          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|1134868678|gb|OMJ67334.1| (hypothetical protein SteCoe_35521 [Stentor coeruleus])

HSP 1 Score: 130.568 bits (327), Expect = 2.497e-32
Identity = 67/192 (34.90%), Postives = 106/192 (55.21%), Query Frame = 0
Query:  116 LAKITELAPE-DNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVH 306
            L+ +T L  E  +   Y ++D+L RVL AR+L+V  A+ MW     WRK Y+   ++EEE   ++  G     G D +GRPC+    R H  +  + +  +R ++ L+E+    +     G I VI D+  +   N D NL      L  +LQ++Y ERLG+ YILH +W++ L++  I P L++KTR K+H
Sbjct:   15 LSDLTNLVHEITDEEKYTNQDMLLRVLRARDLKVQAAYEMWQKWYKWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFSLEETMRYVIYLVEQGVKLADERHTGQICVIYDRGDISSANKDGNLIELGKSLAAMLQDFYAERLGAVYILHVNWLYWLIFQAIKPLLNKKTRNKMH 206          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|118399667|ref|XP_001032158.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|89286496|gb|EAR84495.1| divergent CRAL/TRIO domain protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 120.939 bits (302), Expect = 4.384e-28
Identity = 75/221 (33.94%), Postives = 118/221 (53.39%), Query Frame = 0
Query:  105 SVNHKAI--FEELLAKI-----TELAPED--NVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVH--GQIERHST 314
            S+N   I  F+EL  KI     T L P+D      Y +++   R+L A++  V +AF MW   ++WR       + EE+ A    +G     G DKQ  PC+    +NHI    + D  ++ ++ L+E+   +S     G I++I D+EG   KN+D  LF     L QI+Q+ Y ER+   YIL+ +W F+ ++A++ PFL E+T++KV    QIE  +T
Sbjct:   22 SLNEAQILKFKELKQKIIDEAHTLLCPKDVTKFERYTEDNQAVRLLWAQDFHVEKAFAMWQKWISWRLKIGADDIKEEDIAQEYQRGRAFWHGKDKQNNPCLVVKVKNHIPGV-SSDIMVKYVLFLIEEAIQKSEEAGTGMISIIWDREGFSIKNVDYKLFETFKSLNQIIQDNYAERIQKVYILYPNWFFKTIYALVKPFLTERTKQKVLFVDQIEDMTT 241          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|145502055|ref|XP_001437007.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124404153|emb|CAK69610.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 114.005 bits (284), Expect = 8.059e-26
Identity = 59/193 (30.57%), Postives = 107/193 (55.44%), Query Frame = 0
Query:  113 EELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKV 305
            E +  ++ +L  ED V  Y++ED L R+L+AR  +V ++F  W   V WRK Y+   +  EE    ++       G DK G PC+    + H     N ++ +R  + ++++   ++ +   G I+VI D+EGV  KN D+++F     +V ++Q+ Y ERL   +IL+ +++ + +  ++ PFL EKT+ K+
Sbjct:   23 ERVKVEVPKLVREDLVQKYSNEDHLIRLLIAREWKVNDSFDQWKRWVEWRKQYRADDIKIEEIQQEINLNKAFWNGSDKLGNPCLVVKAKRHFPGQSNPETLIRFFLYMIDQGIQKADQAGTGKISVIWDREGVTSKNFDSSMFTIMKKMVTLVQDNYAERLHQLFILYPNFLVKSIMTVVRPFLSEKTKSKI 215          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|145493659|ref|XP_001432825.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124399939|emb|CAK65428.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-25
Identity = 63/203 (31.03%), Postives = 110/203 (54.19%), Query Frame = 0
Query:  107 NHKAIFEELLAKITE----LAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKV 305
            +H    ++L  KI E    L  E+ +  Y++ED L R+L+AR  ++ +AF  W   V WRK Y+   +  EE    +        G DK G PC+    + H     N ++ +R  + ++++   ++  T  G I+VI D+EGV  KN D+++F     +V ++Q+ Y ERL   +IL+ +++ + +  I+ PFL+EKT+ K+
Sbjct:    6 DHTERLKQLQIKIQEEIRNLVSENLIQKYSNEDHLVRLLIAREWKINDAFEQWKRWVEWRKQYRADEIKIEEIQKEIDLRKAFWNGVDKLGNPCLIIKAKRHFPGESNPETLIRFFLYMIDQGIQQADMTGTGRISVIWDREGVAFKNFDSSMFTIMKKIVTLVQDNYAERLHQLFILYPNFLVKSVMNIVRPFLNEKTKSKI 208          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|747054187|ref|XP_011073289.1| (random slug protein 5 [Sesamum indicum])

HSP 1 Score: 111.309 bits (277), Expect = 6.268e-25
Identity = 64/176 (36.36%), Postives = 93/176 (52.84%), Query Frame = 0
Query:  133 DEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQ-ILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADG--FIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKV 305
            DE  L R L AR+L V +A  M++  +AWR+ + P+  +SE E    + +  + + G DKQGRP        H       D   R +V  L++     +R  DG     +I D EG G  N D     G    + ILQEYYPERLG  Y++H  +IF  +W I++PF+D+ TR+K+
Sbjct:   47 DELTLRRFLRARDLDVEKASAMFLKYLAWRRTFVPKGYISESEIRDEIEQKKMFMQGRDKQGRPIAVVFASRHFAAKGGVDEFRRFLVFALDRLC---SRIPDGQEKFTIIGDIEGFGYCNSDVR---GTIAAINILQEYYPERLGKLYVIHVPYIFMTLWKIVAPFIDKNTRKKI 216          
BLAST of EWM27704.1 vs. NCBI_GenBank
Match: gi|729292749|ref|XP_010530779.1| (PREDICTED: random slug protein 5-like [Tarenaya hassleriana])

HSP 1 Score: 110.923 bits (276), Expect = 8.144e-25
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 0
Query:  129 PPYNDED--LLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQ-ILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKV 305
            P   DED  +L R L AR+  + +A  M++  + W++   P+  +SE E +  LS   V + G DKQGRP + A    H     N +   R ++  L+K      R  + FIA I D +G G  N D   ++     + ILQ+Y+PERLG  YI+H+ +IF   W ++ PF+D KT+RK+
Sbjct:   44 PSTKDEDDLMLRRFLRARDHDIEKASNMFLKYINWKRTSVPKGYISEPEISNDLSHNKVCMGGHDKQGRPVVVAFGSRHNPSKGNPEEFKRFVIYTLQKIVARMPRGEEKFIA-IGDVQGWGYSNCDIRGYLA---ALSILQDYHPERLGKLYIVHSPYIFMTAWKVVYPFIDSKTKRKI 219          
The following BLAST results are available for this feature:
BLAST of EWM27704.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109977|gb|EWM27704.1|0.000e+0100.00CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
gi|585112881|gb|EWM30222.1|6.497e-4138.07cral trio domain containing protein [Nannochlorops... [more]
gi|118360174|ref|XP_001013324.1|4.801e-3336.49divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
gi|1134886566|gb|OMJ83991.1|1.509e-3234.72hypothetical protein SteCoe_14977 [Stentor coerule... [more]
gi|1134868678|gb|OMJ67334.1|2.497e-3234.90hypothetical protein SteCoe_35521 [Stentor coerule... [more]
gi|118399667|ref|XP_001032158.1|4.384e-2833.94divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
gi|145502055|ref|XP_001437007.1|8.059e-2630.57hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145493659|ref|XP_001432825.1|1.392e-2531.03hypothetical protein [Paramecium tetraurelia strai... [more]
gi|747054187|ref|XP_011073289.1|6.268e-2536.36random slug protein 5 [Sesamum indicum][more]
gi|729292749|ref|XP_010530779.1|8.144e-2535.56PREDICTED: random slug protein 5-like [Tarenaya ha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2931rna2931Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications