rna2931, rna2931 (mRNA) Nannochloropsis gaditana

Overview
Namerna2931
Unique Namerna2931
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1728
Alignment locationCM002460.1:301783..302915 -

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Properties
Property NameValue
ProductCRAL-TRIO domain protein
Orig transcript idgnl|cribi|Naga_100034g49.6277.mrna
Orig protein idgnl|cribi|Naga_100034g49.6277
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:301783..302915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g49gene2812Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2931rna2931-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27704.1cds2923Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2931 ID=rna2931|Name=rna2931|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp
ATGGGTTTAGGGCAGTTTCCTCCTCATTCAGATAAAAAATGCCAACACCG
CCGCAGCGCAATTGAGGCGGATCTTCCGGGATTAGAAGAGGACATTGATC
TGCTTCTCCGCCTTATTGATGGATTTAGTCGGAATGGTGGTGGCAGTAGA
GATCAATCATTTTGTCAAGCTGTTCGCGGTGCCCTTTTGGAGGGCGGTCC
CGGTGCAGGCAAGACGGCATTGGCCAAGTCATTGGCTAGACACGGAGGCC
TCCCTTCGTACTATTGCTCGTGCCCCAGCTTATTCAGCAGGGACAGAGGA
GACGCAGAGAGAGGATTACAGGAAATTTTTCAGACTTGCATCCAAAAGGC
GGCTTGTAGCGAGAAGGAATCTTGCCTCCTGGTTCTGGACGATTTGGATT
GCATTGGAAAGGATCGCAAGAAGGCTCGTCATGTAAGTGATCTGGGGATC
CTTGCAATGCTGTTGGAGTGCCTCGACCATCTCCGCGGCGCCCACGTTTT
TGTTTTAGCAATCGCAGGTGACGCCTCGCTCATTGACGTCGGTCTCCTGC
AACCAGGGCGTTTGGAAATTACTCTGAAATTATCAAGCCTTAAGCAAGAG
CAGAGAGAAAAAATTTTGGCAAATTTATTGGGGAAGTTGAACACAAAAAG
TCCTCGGGCGGTGGAGGAAAGCAGTATCCAGTATTCAGGGCGTTTACTCG
ACTCCCTAGCATGCCGGACCAGGGGCTTTAATGGTGCGGATCTTGCTTAT
TTGTGCTCAAGTGCCCTAACCTCCGCATTGAGACGAAGTCAAAGCTCGGA
CCATGTATGTATCGAGGAGGAAGATTGGGAAGTGGCAATGGAGGGGGCCC
ATCCCATAGATATTCCCTGGCTGTTCGTGGAAGGCGCTCGGCTTTCTGAC
CTCGCTGGGATGGACGAAATCATTCAAACAGTCTCCGAGACCATCCTGCA
GCCACTCTTACAGCCTGAAGCCCTGCGAGCCATGGGAGTGCCCCGAGCGT
CTTTCGGTGTCCTATTGTACGGCCCGTCGGGCACCGGAAAGACCACCTTA
GGCCTGGCCTTGGCGGCAGCTGCGCAATCTCATGCGAGTTTTCTTGCAGT
AGAATGTTCCGAGCTGGTGAACAAGGTTGTCGGTGAGTCGGAACGTGCGG
TGGCGCGGCTTTTCCAAGTCGCGCGTCATAGGGCTCCCTGCATTCTCTTT
CTGGACCACGTAGAGGCGATTGCGGGAAGGCGGGGGTTTGATACGTCTTC
AGAGCAAACAATGGATCGCATGCTCAGTACATTACTGATGGAGATGGACG
GGTTGACAGCCGGCGACTGCATGCATGACAGGACAGGAAGTGATATGGTC
ATCGTTGTAGCTGCGACCAATCTTTTGTCCATGCTCGACGAAGCTTTTTT
GCGTCCGGGACGTCTGGACATCCTTATCGAGATGGCTTTACCCGACAAGG
AGGCGCGTGCTGCAATTTTTTTGCTCCATTTTTCACGCATGCCCCTGCGT
TTTGATACCGCGGTGAGGGGCTTGAAATCCGAGAAAAATTCAACCTTCAC
GCCTCTGCACGAATTTGCTGAAACCATGGCTGACTTGAGCGAGGGATTAT
CAGGTGCCGATATCCAGGGGTTGTGCCAGGAAGCAGCCTTATTGGCTTTA
CGCGAGGACTTGGACCGCTCGTATCTCCTTCCGAGACACGTGATGGAGGC
ATTGGATGTAAAAAGACGCAATACATAG
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protein sequence of rna2931

>rna2931-protein ID=rna2931-protein|Name=rna2931|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MAPETSSEATAQVPREQPPARSDTATSHRHSTCHVQQAWCAGDQVATVDS
HTTVETLSINGDSSSVEVTSLMERVDISHRPVPSLGNKASSEKNHSSSYF
LDLPSVNHKAIFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPE
AFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYAL
NRNHIIDAENHDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKN
MDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEK
TRRKVHGQIERHSTQRFKVVVAPWNALGLADRRSLLVQPEHPEMSSFIVK
ITNLL
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mRNA from alignment at CM002460.1:301783..302915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2931 ID=rna2931|Name=rna2931|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp|location=Sequence derived from alignment at CM002460.1:301783..302915- (Nannochloropsis gaditana)
ATGGCACCAGAGACGTCCTCGGAGGCGACGGCCCAAGTCCCGAGGGAGCA
GCCGCCCGCCAGGTCCGACACGGCCACGAGCCACAGGCATTCCACATGCC
ACGTGCAACAAGCTTGGTGTGCCGGAGACCAAGTAGCTACTGTAGATTCA
CACACGACAGTGGAGACGCTGAGTATCAATGGGGATAGTTCCTCTGTGGA
AGTAACTTCGCTCATGGAGAGAGTGGACATTTCCCATCGACCTGTACCCA
GCCTGGGCAATAAAGCCAGCAGTGAGAAGAATCACTCGTCGAGCTACTTT
TTAGACTTGCCTTCTGTCAACCATAAAGCCATTTTTGAGGAGTTACTCGC
AAAAATTACTGAGCTGGCTCCTGAAGACAATGTTCCGCCCTACAATGACG
AAGACCTGCTGAACCGAGTTCTGGTGGCTCGGAACCTGCAGGTGCCCGAG
GCATTCCGCATGTGGATGAATATTGTAGCATGGAGAAAGCACTACCAGCC
TCAGATTCTTTCCGAGGAAGAGGCGGCCCCTTATCTGAGTAAGGGCGTGG
TGTCCATTTGCGGGCCCGACAAGCAGGGCCGACCATGTATATACGCCCTG
AACCGGAACCACATCATCGACGCCGAGAACCACGACTCTAATCTTCGCAC
TATAGTGAATCTCTTGGAAAAGACCACAGTCGAGTCAACCAGGACTGCGG
ACGGCTTCATCGCTGTGATAATCGACCAGGAGGGCGTCGGGCGCAAGAAT
ATGGACACGAATCTTTTCGTGGGAAAGCCCGGTTTGGTTCAGATATTGCA
GGAGTACTACCCCGAACGCCTGGGTTCTTGCTATATTCTTCACACTTCTT
GGATATTTAGGCTGATGTGGGCGATCATTTCCCCCTTTTTGGACGAGAAG
ACTAGAAGAAAGGTCCATGTCCTAGCCAGGACAGAAGACCTTCTCGAACA
TTTTTCATTCGATGCACTGCCACCCGAGCTTAGGGCCAAATTGAACGCCA
CAGCACACAGAGATTCAAAGTAGTCGTTGCCCCTTGGAACGCACTAGGGC
TAGCCGACAGAAGATCGCTGCTGGTTCAACCGGAACACCCGGAAATGTCG
AGTTTCATTGTTAAAATAACTAATTTACTGTGA
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Coding sequence (CDS) from alignment at CM002460.1:301783..302915-

>rna2931 ID=rna2931|Name=rna2931|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002460.1:301783..302915- (Nannochloropsis gaditana)
GGCCAAATTGAACGCCACAGCACACAGAGATTCAAAGTAGTCGTTGCCCC
TTGGAACGCACTAGGGCTAGCCGACAGAAGATCGCTGCTGGTTCAACCGG
AACACCCGGAAATGTCGAGTTTCATTGTTAAAATAACTAATTTACTGTGA
ATGGCACCAGAGACGTCCTCGGAGGCGACGGCCCAAGTCCCGAGGGAGCA
GCCGCCCGCCAGGTCCGACACGGCCACGAGCCACAGGCATTCCACATGCC
ACGTGCAACAAGCTTGGTGTGCCGGAGACCAAGTAGCTACTGTAGATTCA
CACACGACAGTGGAGACGCTGAGTATCAATGGGGATAGTTCCTCTGTGGA
AGTAACTTCGCTCATGGAGAGAGTGGACATTTCCCATCGACCTGTACCCA
GCCTGGGCAATAAAGCCAGCAGTGAGAAGAATCACTCGTCGAGCTACTTT
TTAGACTTGCCTTCTGTCAACCATAAAGCCATTTTTGAGGAGTTACTCGC
AAAAATTACTGAGCTGGCTCCTGAAGACAATGTTCCGCCCTACAATGACG
AAGACCTGCTGAACCGAGTTCTGGTGGCTCGGAACCTGCAGGTGCCCGAG
GCATTCCGCATGTGGATGAATATTGTAGCATGGAGAAAGCACTACCAGCC
TCAGATTCTTTCCGAGGAAGAGGCGGCCCCTTATCTGAGTAAGGGCGTGG
TGTCCATTTGCGGGCCCGACAAGCAGGGCCGACCATGTATATACGCCCTG
AACCGGAACCACATCATCGACGCCGAGAACCACGACTCTAATCTTCGCAC
TATAGTGAATCTCTTGGAAAAGACCACAGTCGAGTCAACCAGGACTGCGG
ACGGCTTCATCGCTGTGATAATCGACCAGGAGGGCGTCGGGCGCAAGAAT
ATGGACACGAATCTTTTCGTGGGAAAGCCCGGTTTGGTTCAGATATTGCA
GGAGTACTACCCCGAACGCCTGGGTTCTTGCTATATTCTTCACACTTCTT
GGATATTTAGGCTGATGTGGGCGATCATTTCCCCCTTTTTGGACGAGAAG
ACTAGAAGAAAGGTCCATGGCCAAATTGAACGCCACAGCACACAGAGATT
CAAAGTAGTCGTTGCCCCTTGGAACGCACTAGGGCTAGCCGACAGAAGAT
CGCTGCTGGTTCAACCGGAACACCCGGAAATGTCGAGTTTCATTGTTAAA
ATAACTAATTTACTGTGAATGGCACCAGAGACGTCCTCGGAGGCGACGGC
CCAAGTCCCGAGGGAGCAGCCGCCCGCCAGGTCCGACACGGCCACGAGCC
ACAGGCATTCCACATGCCACGTGCAACAAGCTTGGTGTGCCGGAGACCAA
GTAGCTACTGTAGATTCACACACGACAGTGGAGACGCTGAGTATCAATGG
GGATAGTTCCTCTGTGGAAGTAACTTCGCTCATGGAGAGAGTGGACATTT
CCCATCGACCTGTACCCAGCCTGGGCAATAAAGCCAGCAGTGAGAAGAAT
CACTCGTCGAGCTACTTTTTAGACTTGCCTTCTGTCAACCATAAAGCCAT
TTTTGAGGAGTTACTCGCAAAAATTACTGAGCTGGCTCCTGAAGACAATG
TTCCGCCCTACAATGACGAAGACCTGCTGAACCGAGTTCTGGTGGCTCGG
AACCTGCAGGTGCCCGAGGCATTCCGCATGTGGATGAATATTGTAGCATG
GAGAAAGCACTACCAGCCTCAGATTCTTTCCGAGGAAGAGGCGGCCCCTT
ATCTGAGTAAGGGCGTGGTGTCCATTTGCGGGCCCGACAAGCAGGGCCGA
CCATGTATATACGCCCTGAACCGGAACCACATCATCGACGCCGAGAACCA
CGACTCTAATCTTCGCACTATAGTGAATCTCTTGGAAAAGACCACAGTCG
AGTCAACCAGGACTGCGGACGGCTTCATCGCTGTGATAATCGACCAGGAG
GGCGTCGGGCGCAAGAATATGGACACGAATCTTTTCGTGGGAAAGCCCGG
TTTGGTTCAGATATTGCAGGAGTACTACCCCGAACGCCTGGGTTCTTGCT
ATATTCTTCACACTTCTTGGATATTTAGGCTGATGTGGGCGATCATTTCC
CCCTTTTTGGACGAGAAGACTAGAAGAAAGGTCCAT
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Synonyms
Publications