EWM27790.1, cds2883 (CDS) Nannochloropsis gaditana

Overview
NameEWM27790.1
Unique Namecds2883
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:189301..189645 -
Alignment locationCM002460.1:188995..189166 -
Alignment locationCM002460.1:188555..188730 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27790.1
Productnuclear mrna splicing factor-associated protein
Orig transcript idgnl|cribi|Naga_101112g1.4280.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:189301..189645 -
CM002460.1supercontigCM002460.1:188995..189166 -
CM002460.1supercontigCM002460.1:188555..188730 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait
Homology
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|585110084|gb|EWM27790.1| (nuclear mrna splicing factor-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 469.929 bits (1208), Expect = 1.336e-167
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0 
Query:    1 MHPRYLHPTVTTTHACIRQSTGPSSFLPNPLPYPHHASDDCLVRPPPLLLRQYLPSPPLPPSPVLSMPVPVADILFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGIGFDDHMAHPAQEEDEQEDYETLPPECEADKYPVVILRNVYDPTETADEDFAELETDMLQECVRHGCVLHAVLSSCFVAYDPAL 230
            MHPRYLHPTVTTTHACIRQSTGPSSFLPNPLPYPHHASDDCLVRPPPLLLRQYLPSPPLPPSPVLSMPVPVADILFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGIGFDDHMAHPAQEEDEQEDYETLPPECEADKYPVVILRNVYDPTETADEDFAELETDMLQECVRHGCVLHAVLSSCFVAYDPAL
Sbjct:    1 MHPRYLHPTVTTTHACIRQSTGPSSFLPNPLPYPHHASDDCLVRPPPLLLRQYLPSPPLPPSPVLSMPVPVADILFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGIGFDDHMAHPAQEEDEQEDYETLPPECEADKYPVVILRNVYDPTETADEDFAELETDMLQECVRHGCVLHAVLSSCFVAYDPAL 230
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|970642154|gb|KUF83936.1| (HIV Tat-specific factor 1 [Phytophthora nicotianae] >gi|970648736|gb|KUF88195.1| HIV Tat-specific factor 1 [Phytophthora nicotianae])

HSP 1 Score: 76.2554 bits (186), Expect = 6.674e-13
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 0 
Query:   80 GRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSY-----KEEGANVHEGIGFDDHMAHPAQ-----EEDEQEDYETLPPECEADKYPVVILRNVYDPTETAD-EDFAELETDMLQECVRHGCVLH 216
            G++RRIK Y+D  G  KGDA+VT++   +   A+ +LN + + P   +  ++A FS      KEE     E  G     +H        EE + +  +   P C       +IL++V+DP E +D E F +LE DM  EC +HG V H
Sbjct:   80 GKVRRIKFYKDEKGGLKGDAVVTFSSRATMLKAVDRLNHFEVKPGVVITATEATFSTTKPTGKEES---KENTGAAQVASHTTNVLASCEEAKADSAQLDLPSCS------IILKHVWDPLEGSDAEFFDDLEEDMRAECSKHGAVEH 218
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|970634557|gb|KUF79741.1| (HIV Tat-specific factor 1 [Phytophthora nicotianae])

HSP 1 Score: 74.7146 bits (182), Expect = 2.403e-12
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 0 
Query:   80 GRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSY-----KEEGANVHEGIGFDDHMAHPAQ-----EEDEQEDYETLPPECEADKYPVVILRNVYDPTETAD-EDFAELETDMLQECVRHGCVLH 216
            G++RRIK Y++  G  KGDA+VT++   +   A+ +LN + + P   +  ++A FS      KEE     E  G     +H        EE + +  +   P C       +IL++V+DP E +D E F +LE DM  EC +HG V H
Sbjct:   80 GKVRRIKFYKNEKGGLKGDAVVTFSSRATMLKAVDRLNHFEVKPGVVITATEATFSTTKPTGKEES---KENTGAAQVASHTTNVLASCEEAKADSAQLDLPSCS------IILKHVWDPLEGSDAEFFDDLEEDMRAECSKHGAVEH 218
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|567960551|gb|ETK86105.1| (hypothetical protein L915_09232 [Phytophthora parasitica] >gi|567989265|gb|ETL39528.1| hypothetical protein L916_09145 [Phytophthora parasitica] >gi|568018486|gb|ETL92659.1| hypothetical protein L917_09069 [Phytophthora parasitica] >gi|570950717|gb|ETP15974.1| hypothetical protein F441_09372 [Phytophthora parasitica CJ01A1] >gi|570984442|gb|ETP44031.1| hypothetical protein F442_09336 [Phytophthora parasitica P10297])

HSP 1 Score: 74.7146 bits (182), Expect = 2.501e-12
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 0 
Query:   80 GRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSY-----KEEGANVHEGIGFDDHMAHPAQ-----EEDEQEDYETLPPECEADKYPVVILRNVYDPTETAD-EDFAELETDMLQECVRHGCVLH 216
            G++RRIK Y++  G  KGDA+VT++   +   A+ +LN + + P   +  ++A FS      KEE     E  G     +H        EE + +  +   P C       +IL++V+DP E +D E F +LE DM  EC +HG V H
Sbjct:   80 GKVRRIKFYKNEKGGLKGDAVVTFSSRATMLKAVDRLNHFEVKPGVVITATEATFSTTKPTGKEES---KENTGAAQVASHTTNVLASCEEAKADSAQLDLPSCS------IILKHVWDPLEGSDAEFFDDLEEDMRAECSKHGAVEH 218
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|566023260|gb|ETI46171.1| (hypothetical protein F443_09412 [Phytophthora parasitica P1569])

HSP 1 Score: 74.7146 bits (182), Expect = 2.526e-12
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 0 
Query:   80 GRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSY-----KEEGANVHEGIGFDDHMAHPAQ-----EEDEQEDYETLPPECEADKYPVVILRNVYDPTETAD-EDFAELETDMLQECVRHGCVLH 216
            G++RRIK Y++  G  KGDA+VT++   +   A+ +LN + + P   +  ++A FS      KEE     E  G     +H        EE + +  +   P C       +IL++V+DP E +D E F +LE DM  EC +HG V H
Sbjct:   80 GKVRRIKFYKNEKGGLKGDAVVTFSSRATMLKAVDRLNHFEVKPGVVITATEATFSTTKPTGKEES---KENTGAAQVASHTTNVLASCEEAKADSAQLDLPSCS------IILKHVWDPLEGSDAEFFDDLEEDMRAECSKHGAVEH 218
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|568048929|gb|ETM45956.1| (hypothetical protein L914_09094 [Phytophthora parasitica] >gi|570326893|gb|ETO74841.1| hypothetical protein F444_09497 [Phytophthora parasitica P1976])

HSP 1 Score: 74.7146 bits (182), Expect = 2.655e-12
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 0 
Query:   80 GRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSY-----KEEGANVHEGIGFDDHMAHPAQ-----EEDEQEDYETLPPECEADKYPVVILRNVYDPTETAD-EDFAELETDMLQECVRHGCVLH 216
            G++RRIK Y++  G  KGDA+VT++   +   A+ +LN + + P   +  ++A FS      KEE     E  G     +H        EE + +  +   P C       +IL++V+DP E +D E F +LE DM  EC +HG V H
Sbjct:   80 GKVRRIKFYKNEKGGLKGDAVVTFSSRATMLKAVDRLNHFEVKPGVVITATEATFSTTKPTGKEES---KENTGAAQVASHTTNVLASCEEAKADSAQLDLPSCS------IILKHVWDPLEGSDAEFFDDLEEDMRAECSKHGAVEH 218
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|675194881|ref|XP_008906325.1| (hypothetical protein PPTG_12344 [Phytophthora parasitica INRA-310] >gi|568093786|gb|ETN08577.1| hypothetical protein PPTG_12344 [Phytophthora parasitica INRA-310])

HSP 1 Score: 73.9442 bits (180), Expect = 3.691e-12
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 0 
Query:   80 GRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSY-----KEEGANVHEGIGFDDHMAHPAQ-----EEDEQEDYETLPPECEADKYPVVILRNVYDPTETAD-EDFAELETDMLQECVRHGCVLH 216
            G++RRIK Y++  G  KGDA+VT++   +   A+ +LN + + P   +  ++A FS      KEE     E  G     +H        EE + +  +   P C       +IL++V+DP E +D E F +LE DM  EC +HG V H
Sbjct:   80 GKVRRIKFYKNDKGGLKGDAVVTFSSRATMLKAVDRLNHFEVKPGVVITATEATFSTTKPTGKEES---KENTGAAQVASHTTNVLASCEEAKADSAQLDLPSCS------IILKHVWDPLEGSDAEFFDDLEEDMRAECSKHGAVEH 218
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|325187011|emb|CCA21555.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.559 bits (179), Expect = 5.937e-12
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 0 
Query:   75 LFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGIGFDDHMAHPAQEE----------DEQEDYETLPPECEADK-YPVVILRNVYDPTETADED---FAELETDMLQECVRHGCVLH 216
            L A  G+++RIK Y+   G+ KGDALVT+        AI+KL+ + + P   +  S ADF+ ++   +V+     D     PA E           DE+E  +++ P+ +++     VIL N +DP+   D+    F ELE D+  EC + G V H
Sbjct:   62 LCAKIGKVKRIKFYKCERGRLKGDALVTFLSHSIMEKAIEKLDNFEIKPGVVITASAADFAQRKGPKDVNSTEQSDTQTDLPAPEAPVEANNEAKLDEKEQVKSIDPKADSNTPSQTVILLNAWDPSGMQDDITLYFNELEGDIHSECSKFGKVEH 217
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|635363196|emb|CCI48226.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 64.3142 bits (155), Expect = 1.053e-8
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 0 
Query:   75 LFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYK--EEGANVHEGIGFDDHMAHP-----AQEEDEQEDYETLPPECEADKYPV---VILRNVYDPTETADED---FAELETDMLQECVRHGCVLH 216
            L A  GR++RIK Y+   G+ KGDALVT+        AI+KL+ + + P   +  S ADF+ +  ++     E      H++ P     A  E    + E +      D+ P+   V+L N +DP++   +    F ELE D+  EC + G V H
Sbjct:   63 LCAKIGRVKRIKFYKCERGRLKGDALVTFLSHSVMEKAIEKLDHFEIKPGVVITASAADFAKRKAQKDETTTEKNDTRPHLSTPEAPVEANNEANSTEIEHIESIDTGDRSPLPQTVVLMNAWDPSKKQKDVTLYFNELEGDIHSECSKCGKVEH 217
[Close]
BLAST of EWM27790.1 vs. NCBI_GenBank
Match: gi|671684904|emb|CDS13921.1| (hypothetical protein LRAMOSA06094 [Lichtheimia ramosa])

HSP 1 Score: 64.3142 bits (155), Expect = 1.782e-8
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 0 
Query:   84 RIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYAL---APNHCLRLSQADFSYKEEGANVHEGIGFDDHMAHPAQEEDEQEDYETLPPECEADKY-PVVILRNVYDPTETADED---FAELETDMLQECVRHGCVLHAVL 219
            +IK+Y+DA G+PKGDALVTY +  S   AI  L+        P+  +R+ QA F+ K+  A+  +     +       +   + D+       +A+K+  +VIL+N+Y   E  DED     EL+ D+ +EC + G V + +L
Sbjct:  150 KIKIYQDAEGRPKGDALVTYFKEESVPLAINLLDDAEFRLGEPSSRIRVQQAVFTEKQLPADKKKNQASKNKTKKRLHQLQRKLDWVEEETGKKAEKFNKIVILKNMYTQQEL-DEDPTLLLELKEDVREECEKLGEVTNVIL 291
The following BLAST results are available for this feature:
BLAST of EWM27790.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110084|gb|EWM27790.1|1.336e-167100.00nuclear mrna splicing factor-associated protein [N... [more]
gi|970642154|gb|KUF83936.1|6.674e-1333.78HIV Tat-specific factor 1 [Phytophthora nicotianae... [more]
gi|970634557|gb|KUF79741.1|2.403e-1233.11HIV Tat-specific factor 1 [Phytophthora nicotianae... [more]
gi|567960551|gb|ETK86105.1|2.501e-1233.11hypothetical protein L915_09232 [Phytophthora para... [more]
gi|566023260|gb|ETI46171.1|2.526e-1233.11hypothetical protein F443_09412 [Phytophthora para... [more]
gi|568048929|gb|ETM45956.1|2.655e-1233.11hypothetical protein L914_09094 [Phytophthora para... [more]
gi|675194881|ref|XP_008906325.1|3.691e-1233.11hypothetical protein PPTG_12344 [Phytophthora para... [more]
gi|325187011|emb|CCA21555.1|5.937e-1232.05conserved hypothetical protein [Albugo laibachii N... [more]
gi|635363196|emb|CCI48226.1|1.053e-830.97unnamed protein product [Albugo candida][more]
gi|671684904|emb|CDS13921.1|1.782e-832.17hypothetical protein LRAMOSA06094 [Lichtheimia ram... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2891rna2891Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications