rna2883, rna2883 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2883
Unique Name	rna2883
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	709
Alignment location	CM002460.1:158141..159585 -

Link to JBrowse

Properties


Property Name	Value
Product	multicopper oxidase
Orig transcript id	gnl\|cribi\|Naga_100686g2.1367.mrna
Orig protein id	gnl\|cribi\|Naga_100686g2.1367
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:158141..159585 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100686g2	gene2760	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2883	rna2883-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27798.1	cds2875	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:158141..159585-
coding sequence from alignment at CM002460.1:158141..159585-

mRNA sequence

>rna2883 ID=rna2883|Name=rna2883|organism=Nannochloropsis gaditana|type=mRNA|length=709bp
CCTCCAGATTGTGGGCATGTCTCACGGAGAGGGTGTCGACTACGCCGTCG
GGGACTGGCGGGATTCCATCTCGTTGCCGCTGCTCCCAGCAGGCGGTGGG
TTCGTGACCATCCGGTGGCGAGCTGACGACTATACGGGCAAAGCGCCCGC
ACACTGCCACATTTTTGCCCATTCAGACACGGGGATGAGCTACACCTTTG
AAATCTATGACCCTGAAAAAGAAAAAGCGGGGATGGTTGCCAGGGAAGGA
GAATATCCCGGAGACGTTTAGGGATGAGGACAGTACAGTCATCATCGTTC
TTCCTCCCCACAGTGTCCATGACCCTCTTTACGGAGGATTGGTTTGTGTA
TAGATGGGCCCAGAAGGGGGCAAAGAAGTGCCCGGGGAAAAAAGGAAAGG
TAAAGGACGATTCGAATGACTTGTCCTTAATGAGTTGAAGATGTGGTGTG
GGGACATGGGAAGGATAATGGCGCGAATGACGACGTACTCGGCGGTTGCT
AGTTGCGGCTGACGCAAGATGGAGCAATCGATGGACGACGGACGTGTGGC
AAAACAACTATCGGAAAAAGCAAACTAAGGCATGCCAGGTCTAGGTAGTC
CATGAGCTTTCGAGTGACTGGAAACGGAAGCCAAACAAATATGACGAAGA
AACGAGTAGTTCGGATCCGCGACGATGCGTCCGAGTGCTTGATTACCTTG
CTGCCTTTT

protein sequence of rna2883

>rna2883-protein ID=rna2883-protein|Name=rna2883|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MPRTYGTSGTGKGQADGNEKYEVRSPDQQISSSYTYQGVEESDVQKHAEA
CATDAAVAEEEEGKAMTDSTPIISVTEHVGREGGRFENPQRRIRTVGLRV
GLVVAVGACVALFGARNGNGKGSIAPSSVSEEHVEGMAMRPIPGSHNPEE
LRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRP
GETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIARG
A

mRNA from alignment at CM002460.1:158141..159585-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2883 ID=rna2883|Name=rna2883|organism=Nannochloropsis gaditana|type=mRNA|length=1445bp|location=Sequence derived from alignment at CM002460.1:158141..159585- (Nannochloropsis gaditana)
ATGCCACGTACTTACGGCACTTCTGGGACCGGAAAAGGGCAGGCGGATGG
AAATGAAAAGTACGAAGTGCGATCGCCTGACCAACAAATCTCTTCGAGCT
ATACATATCAAGGCGTAGAGGAAAGTGATGTCCAGAAGCACGCAGAAGCA
TGTGCGACGGACGCTGCAGTGGCGGAGGAGGAGGAAGGGAAAGCAATGAC
AGACTCAACGCCTATCATTTCGGTGACGGAACATGTAGGCAGAGAGGGAG
GGCGTTTTGAGAACCCGCAGCGTCGCATCCGAACAGTGGGGTTGCGCGTA
GGCCTGGTGGTCGCAGTAGGCGCGTGCGTGGCACTCTTTGGAGCACGGAA
TGGAAATGGAAAGGGATCGATTGCGCCGTCGTCTGTGTCGGAGGAACACG
TAGAGGGTATGGCCATGCGCCCCATTCCCGGTTCTCACAATCCCGAGGAA
CTGCGGCAGCCGGAAATCAGGTAAGAAGTTCGATGCCAGGGCAGCGCGAT
GGTCATTTAAAAAAAAAAAAGGTCTGGGGGCCAGGGGAAAGGCGGAAGGA
AATGGCGCATGTGACTGCGTATACATGCGGTCGTTGTGCTTTGGAGGGGG
TGGGGGGACAGGTAGACATGTCTGAGGGAGCGTCGTAGACGCACCTCGTA
TGCGCTTTGTGCTGGCATGTCTCCAAAGTTGAGATGTTGATCGAGTCTCC
ACTCTTTCGTAAACAGACGCGCAGTGGATGGTGTGCTGGACACCACGTTG
CGGATCCAACCCGCGCGCATCACAAATGGCCCCGTGAGTTACAGTACCCG
GACGTACGAGGTAGGGAAGGAGGAAGGGAGGGAGGGCGGGAGGGTGGAAC
GGTTCACTCGTGACAGTTTGGTAACTGACATAATGAACCAATTAATCATT
GATAATTTCTACTGAAGGGCACGGTGCCAGGTCCAACGCTCCTGCTGCGT
CCCGGCGAGACGTTACGGATACACCAAGTACGTCCTCCCGCCCGCCCTCC
CTCCCTCCCTCCTTACCTTGTTCGTGTCCTCCTCCCCTTTTCTGCTCCCT
CTCCCCGTCCTCCTTCCTTTTTTCCTCCCGTTGTTCTTTTATCCTGTCTC
ATGCCTTTCGCCACGTTTTGGTTTGCGGTACTTGCGGAGTCGTCTCCCTC
GCGCTTCTGACCGCATCGCGCCTACTCCCTTTCCTTTCCCTCCCCCCCGC
CTCGCTGACTCGCTCCCCCCGCCTTTCCGCCCTCCCTCCCGCCCTTTCTC
AGATCAATGGCCTGGCGCCGGAGCAATTGAAGCGGTCCCAAGTCGTGCCT
CAGACTCTGCATTGGCCCAACACCACCACCATCCACACCCACGGCTTGCA
CATCGATCCCAGTGGCATCGTACGTCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTTTTCCCCATTATCGTAGGCTCGCGGAGCATAA

Coding sequence (CDS) from alignment at CM002460.1:158141..159585-

>rna2883 ID=rna2883|Name=rna2883|organism=Nannochloropsis gaditana|type=CDS|length=3780bp|location=Sequence derived from alignment at CM002460.1:158141..159585- (Nannochloropsis gaditana)
GCTCGCGGAGCATAAATCAATGGCCTGGCGCCGGAGCAATTGAAGCGGTC
CCAAGTCGTGCCTCAGACTCTGCATTGGCCCAACACCACCACCATCCACA
CCCACGGCTTGCACATCGATCCCAGTGGCATCGGCACGGTGCCAGGTCCA
ACGCTCCTGCTGCGTCCCGGCGAGACGTTACGGATACACCAAACGCGCAG
TGGATGGTGTGCTGGACACCACGTTGCGGATCCAACCCGCGCGCATCACA
AATGGCCCCGTGAGTTACAGTACCCGGACGTACGAGATGCCACGTACTTA
CGGCACTTCTGGGACCGGAAAAGGGCAGGCGGATGGAAATGAAAAGTACG
AAGTGCGATCGCCTGACCAACAAATCTCTTCGAGCTATACATATCAAGGC
GTAGAGGAAAGTGATGTCCAGAAGCACGCAGAAGCATGTGCGACGGACGC
TGCAGTGGCGGAGGAGGAGGAAGGGAAAGCAATGACAGACTCAACGCCTA
TCATTTCGGTGACGGAACATGTAGGCAGAGAGGGAGGGCGTTTTGAGAAC
CCGCAGCGTCGCATCCGAACAGTGGGGTTGCGCGTAGGCCTGGTGGTCGC
AGTAGGCGCGTGCGTGGCACTCTTTGGAGCACGGAATGGAAATGGAAAGG
GATCGATTGCGCCGTCGTCTGTGTCGGAGGAACACGTAGAGGGTATGGCC
ATGCGCCCCATTCCCGGTTCTCACAATCCCGAGGAACTGCGGCAGCCGGA
AATCAGGCTCGCGGAGCATAAATCAATGGCCTGGCGCCGGAGCAATTGAA
GCGGTCCCAAGTCGTGCCTCAGACTCTGCATTGGCCCAACACCACCACCA
TCCACACCCACGGCTTGCACATCGATCCCAGTGGCATCGGCACGGTGCCA
GGTCCAACGCTCCTGCTGCGTCCCGGCGAGACGTTACGGATACACCAAAC
GCGCAGTGGATGGTGTGCTGGACACCACGTTGCGGATCCAACCCGCGCGC
ATCACAAATGGCCCCGTGAGTTACAGTACCCGGACGTACGAGATGCCACG
TACTTACGGCACTTCTGGGACCGGAAAAGGGCAGGCGGATGGAAATGAAA
AGTACGAAGTGCGATCGCCTGACCAACAAATCTCTTCGAGCTATACATAT
CAAGGCGTAGAGGAAAGTGATGTCCAGAAGCACGCAGAAGCATGTGCGAC
GGACGCTGCAGTGGCGGAGGAGGAGGAAGGGAAAGCAATGACAGACTCAA
CGCCTATCATTTCGGTGACGGAACATGTAGGCAGAGAGGGAGGGCGTTTT
GAGAACCCGCAGCGTCGCATCCGAACAGTGGGGTTGCGCGTAGGCCTGGT
GGTCGCAGTAGGCGCGTGCGTGGCACTCTTTGGAGCACGGAATGGAAATG
GAAAGGGATCGATTGCGCCGTCGTCTGTGTCGGAGGAACACGTAGAGGGT
ATGGCCATGCGCCCCATTCCCGGTTCTCACAATCCCGAGGAACTGCGGCA
GCCGGAAATCAGGCTCGCGGAGCATAAATCAATGGCCTGGCGCCGGAGCA
ATTGAAGCGGTCCCAAGTCGTGCCTCAGACTCTGCATTGGCCCAACACCA
CCACCATCCACACCCACGGCTTGCACATCGATCCCAGTGGCATCGGCACG
GTGCCAGGTCCAACGCTCCTGCTGCGTCCCGGCGAGACGTTACGGATACA
CCAAACGCGCAGTGGATGGTGTGCTGGACACCACGTTGCGGATCCAACCC
GCGCGCATCACAAATGGCCCCGTGAGTTACAGTACCCGGACGTACGAGAT
GCCACGTACTTACGGCACTTCTGGGACCGGAAAAGGGCAGGCGGATGGAA
ATGAAAAGTACGAAGTGCGATCGCCTGACCAACAAATCTCTTCGAGCTAT
ACATATCAAGGCGTAGAGGAAAGTGATGTCCAGAAGCACGCAGAAGCATG
TGCGACGGACGCTGCAGTGGCGGAGGAGGAGGAAGGGAAAGCAATGACAG
ACTCAACGCCTATCATTTCGGTGACGGAACATGTAGGCAGAGAGGGAGGG
CGTTTTGAGAACCCGCAGCGTCGCATCCGAACAGTGGGGTTGCGCGTAGG
CCTGGTGGTCGCAGTAGGCGCGTGCGTGGCACTCTTTGGAGCACGGAATG
GAAATGGAAAGGGATCGATTGCGCCGTCGTCTGTGTCGGAGGAACACGTA
GAGGGTATGGCCATGCGCCCCATTCCCGGTTCTCACAATCCCGAGGAACT
GCGGCAGCCGGAAATCAGGCTCGCGGAGCATAAATCAATGGCCTGGCGCC
GGAGCAATTGAAGCGGTCCCAAGTCGTGCCTCAGACTCTGCATTGGCCCA
ACACCACCACCATCCACACCCACGGCTTGCACATCGATCCCAGTGGCATC
GGCACGGTGCCAGGTCCAACGCTCCTGCTGCGTCCCGGCGAGACGTTACG
GATACACCAAACGCGCAGTGGATGGTGTGCTGGACACCACGTTGCGGATC
CAACCCGCGCGCATCACAAATGGCCCCGTGAGTTACAGTACCCGGACGTA
CGAGATGCCACGTACTTACGGCACTTCTGGGACCGGAAAAGGGCAGGCGG
ATGGAAATGAAAAGTACGAAGTGCGATCGCCTGACCAACAAATCTCTTCG
AGCTATACATATCAAGGCGTAGAGGAAAGTGATGTCCAGAAGCACGCAGA
AGCATGTGCGACGGACGCTGCAGTGGCGGAGGAGGAGGAAGGGAAAGCAA
TGACAGACTCAACGCCTATCATTTCGGTGACGGAACATGTAGGCAGAGAG
GGAGGGCGTTTTGAGAACCCGCAGCGTCGCATCCGAACAGTGGGGTTGCG
CGTAGGCCTGGTGGTCGCAGTAGGCGCGTGCGTGGCACTCTTTGGAGCAC
GGAATGGAAATGGAAAGGGATCGATTGCGCCGTCGTCTGTGTCGGAGGAA
CACGTAGAGGGTATGGCCATGCGCCCCATTCCCGGTTCTCACAATCCCGA
GGAACTGCGGCAGCCGGAAATCAGGCTCGCGGAGCATAAATCAATGGCCT
GGCGCCGGAGCAATTGAAGCGGTCCCAAGTCGTGCCTCAGACTCTGCATT
GGCCCAACACCACCACCATCCACACCCACGGCTTGCACATCGATCCCAGT
GGCATCGGCACGGTGCCAGGTCCAACGCTCCTGCTGCGTCCCGGCGAGAC
GTTACGGATACACCAAACGCGCAGTGGATGGTGTGCTGGACACCACGTTG
CGGATCCAACCCGCGCGCATCACAAATGGCCCCGTGAGTTACAGTACCCG
GACGTACGAGATGCCACGTACTTACGGCACTTCTGGGACCGGAAAAGGGC
AGGCGGATGGAAATGAAAAGTACGAAGTGCGATCGCCTGACCAACAAATC
TCTTCGAGCTATACATATCAAGGCGTAGAGGAAAGTGATGTCCAGAAGCA
CGCAGAAGCATGTGCGACGGACGCTGCAGTGGCGGAGGAGGAGGAAGGGA
AAGCAATGACAGACTCAACGCCTATCATTTCGGTGACGGAACATGTAGGC
AGAGAGGGAGGGCGTTTTGAGAACCCGCAGCGTCGCATCCGAACAGTGGG
GTTGCGCGTAGGCCTGGTGGTCGCAGTAGGCGCGTGCGTGGCACTCTTTG
GAGCACGGAATGGAAATGGAAAGGGATCGATTGCGCCGTCGTCTGTGTCG
GAGGAACACGTAGAGGGTATGGCCATGCGCCCCATTCCCGGTTCTCACAA
TCCCGAGGAACTGCGGCAGCCGGAAATCAG

Synonyms

Publications