EWM27798.1, cds2875 (CDS) Nannochloropsis gaditana

Overview
NameEWM27798.1
Unique Namecds2875
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:159116..159585 -
Alignment locationCM002460.1:158776..158869 -
Alignment locationCM002460.1:158609..158668 -
Alignment locationCM002460.1:158217..158333 -
Alignment locationCM002460.1:158141..158155 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27798.1
Productmulticopper oxidase
Orig transcript idgnl|cribi|Naga_100686g2.1367.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:159116..159585 -
CM002460.1supercontigCM002460.1:158776..158869 -
CM002460.1supercontigCM002460.1:158609..158668 -
CM002460.1supercontigCM002460.1:158217..158333 -
CM002460.1supercontigCM002460.1:158141..158155 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
Homology
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|585110097|gb|EWM27798.1| (multicopper oxidase [Nannochloropsis gaditana])

HSP 1 Score: 510.76 bits (1314), Expect = 0.000e+0
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MPRTYGTSGTGKGQADGNEKYEVRSPDQQISSSYTYQGVEESDVQKHAEACATDAAVAEEEEGKAMTDSTPIISVTEHVGREGGRFENPQRRIRTVGLRVGLVVAVGACVALFGARNGNGKGSIAPSSVSEEHVEGMAMRPIPGSHNPEELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIARGA 251
            MPRTYGTSGTGKGQADGNEKYEVRSPDQQISSSYTYQGVEESDVQKHAEACATDAAVAEEEEGKAMTDSTPIISVTEHVGREGGRFENPQRRIRTVGLRVGLVVAVGACVALFGARNGNGKGSIAPSSVSEEHVEGMAMRPIPGSHNPEELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIARGA
Sbjct:    1 MPRTYGTSGTGKGQADGNEKYEVRSPDQQISSSYTYQGVEESDVQKHAEACATDAAVAEEEEGKAMTDSTPIISVTEHVGREGGRFENPQRRIRTVGLRVGLVVAVGACVALFGARNGNGKGSIAPSSVSEEHVEGMAMRPIPGSHNPEELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIARGA 251          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|1173959115|gb|OQS05383.1| (hypothetical protein THRCLA_02473, partial [Thraustotheca clavata])

HSP 1 Score: 104.76 bits (260), Expect = 7.383e-23
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 0
Query:  151 LRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIA 248
            L+QP   ++ DG+LD TLR Q AR T GPV+++TRTY G  PGPTL ++PG+TL+I  +N L P+ L    +   T+  PNTT +H HG+H+ P GI+
Sbjct:   65 LQQPPAHKSADGILDITLRAQVARFTQGPVAFNTRTYNGMFPGPTLCVKPGDTLKITLVNDLLPD-LPSEHLSMNTMRDPNTTNLHVHGMHVSPMGIS 161          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|1173936338|gb|OQR87300.1| (hypothetical protein ACHHYP_09146 [Achlya hypogyna])

HSP 1 Score: 107.457 bits (267), Expect = 8.529e-23
Identity = 69/188 (36.70%), Postives = 97/188 (51.60%), Query Frame = 0
Query:   67 TDSTPIISVTEH------VGREGGRFENPQRRIRTVGLRVGLVVAVGACVALFGARNGNGKGSIAPSSVSEEHVEGMAMRPIPGSHNPEELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIA 248
            TD T +++   H      VG    R E+P R      + V  +V V +   L    + NG GS   +    +    +A RP        +L  P   ++ DGVL+ TL +QPAR  +GPV+++TR+Y G  PGPTL  +PG+TLRI  IN L P+          TL  PNTT +H HG+H+ PSG+A
Sbjct:  532 TDFTGLVAAHCHILGHADVGMAMLRREDPFRLF----VAVLAIVTVASLFVLSPHLDWNGGGSAVQNLTMAQLDAIVASRP--------DLALPLTYKSHDGVLEVTLTVQPARFASGPVAFNTRSYNGMFPGPTLCAKPGDTLRITLINQLLPDDPTAHLQQMNTLREPNTTNLHFHGMHVSPSGVA 707          

HSP 2 Score: 98.5969 bits (244), Expect = 7.989e-20
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 0
Query:  151 LRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIA 248
            L+QP   ++ DGVL+ +L ++  R  +GP++++TRTY G  PGPTL  +PG+TLRI  IN L P+ L    +   TL  PNTT +H HG+H+ PSGIA
Sbjct:   64 LQQPLAYKSHDGVLEVSLTVEATRFNDGPLAFNTRTYNGMFPGPTLCAKPGDTLRITLINQLLPD-LPSEHLHMNTLRDPNTTNLHFHGMHVSPSGIA 160          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|1173938582|gb|OQR88771.1| (hypothetical protein THRCLA_10113, partial [Thraustotheca clavata])

HSP 1 Score: 100.523 bits (249), Expect = 1.386e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 0
Query:  151 LRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSGIA 248
            L+QP   ++ +GVL+ TL +Q  R  NGPV+++TRTY G  PGPTL ++PG+T+RI  IN L P+     + +  T+H PNTT +H HG+H+ PSG++
Sbjct:   54 LKQPTAYKSHNGVLEATLTMQTTRFQNGPVAFNTRTYNGMFPGPTLCVKPGDTMRITLINQLLPDG---DEGMINTMHNPNTTNLHVHGMHVSPSGLS 148          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|695390627|ref|XP_009519772.1| (hypothetical protein PHYSODRAFT_554641 [Phytophthora sojae] >gi|348684669|gb|EGZ24484.1| hypothetical protein PHYSODRAFT_554641 [Phytophthora sojae])

HSP 1 Score: 100.523 bits (249), Expect = 1.484e-20
Identity = 62/175 (35.43%), Postives = 92/175 (52.57%), Query Frame = 0
Query:   81 REGGRFENPQRRIRTVGLRVGL----VVAVGACVALFGARNGNGKG-----SIAPSSVSEEHVEGMAMRPIPGSHNPEELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSG 246
            R G R    Q + +T+ LR  L    +V VG  V L  +     K        A SS + + +    ++ +P       L+  E R + +G L+TTL +   R+ NGP+++ TR YE +VPGP LLL+PG+ L IH +N L P        +P T+H PN T +H HG+H+DP+G
Sbjct:   67 RRGAR----QLQTQTLRLRRNLACTFIVGVGIAVLLLVSYVHTDKAPSLRAETAESSSTRQELLNRVLQQLPA------LQTLETRASANGELNTTLTVAEKRVDNGPIAFYTRAYEDSVPGPILLLKPGDVLNIHLVNNLGPN--VPGPWMPNTMHEPNNTNLHFHGMHVDPTG 229          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|1214683476|gb|OWZ01339.1| (hypothetical protein PHMEG_00027294, partial [Phytophthora megakarya])

HSP 1 Score: 100.523 bits (249), Expect = 1.685e-20
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0
Query:  150 ELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSG 246
            EL   E R +V+G L+TT+ +    + NGPV++ TR YE +VPGP LLL+PG+ L IH IN L P      Q +P T+H PN T +H HG+H+DP+G
Sbjct:  124 ELPTLETRASVNGELNTTITVAEKLVENGPVAFYTRAYEDSVPGPLLLLKPGDVLNIHLINNLGPN--VAGQWMPNTMHEPNNTNLHFHGMHVDPTG 218          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|568038215|gb|ETM35755.1| (hypothetical protein L914_17392 [Phytophthora parasitica])

HSP 1 Score: 97.8265 bits (242), Expect = 1.281e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0
Query:  150 ELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSG 246
            EL   E R +V+G L+TT+ +    + NGP+++ TR YE +VPGP L+L+PG+ L IH +N LAP      +  P T+H PN T +H HG+H+DP+G
Sbjct:  123 ELPTLETRASVNGELNTTITVAEKLVDNGPIAFYTRAYEDSVPGPMLVLKPGDVLNIHLVNNLAPN--VAGEWTPNTMHEPNNTNLHFHGMHVDPTG 217          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|970649674|gb|KUF88881.1| (Multicopper oxidase mco [Phytophthora nicotianae] >gi|970658109|gb|KUF95913.1| hypothetical protein AM588_10007665 [Phytophthora nicotianae])

HSP 1 Score: 97.8265 bits (242), Expect = 1.423e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0
Query:  150 ELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSG 246
            EL   E R +V+G L+TT+ +    + NGP+++ TR YE +VPGP L+L+PG+ L IH +N LAP      +  P T+H PN T +H HG+H+DP+G
Sbjct:  123 ELPTLETRASVNGELNTTITVAEKLVDNGPIAFYTRAYEDSVPGPMLVLKPGDVLNIHLVNNLAPN--VAGEWTPNTMHEPNNTNLHFHGMHVDPTG 217          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|567950150|gb|ETK75868.1| (hypothetical protein L915_17597 [Phytophthora parasitica] >gi|567978819|gb|ETL29305.1| hypothetical protein L916_17491 [Phytophthora parasitica] >gi|570940180|gb|ETP05437.1| hypothetical protein F441_17957 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 97.8265 bits (242), Expect = 1.436e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0
Query:  150 ELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSG 246
            EL   E R +V+G L+TT+ +    + NGP+++ TR YE +VPGP L+L+PG+ L IH +N LAP      +  P T+H PN T +H HG+H+DP+G
Sbjct:  123 ELPTLETRASVNGELNTTITVAEKLVDNGPIAFYTRAYEDSVPGPMLVLKPGDVLNIHLVNNLAPN--VAGEWTPNTMHEPNNTNLHFHGMHVDPTG 217          
BLAST of EWM27798.1 vs. NCBI_GenBank
Match: gi|566012700|gb|ETI35611.1| (hypothetical protein F443_18076 [Phytophthora parasitica P1569] >gi|568008302|gb|ETL82523.1| hypothetical protein L917_17330 [Phytophthora parasitica] >gi|570316408|gb|ETO64356.1| hypothetical protein F444_18100 [Phytophthora parasitica P1976] >gi|570970444|gb|ETP33563.1| hypothetical protein F442_17921 [Phytophthora parasitica P10297] >gi|970624288|gb|KUF72238.1| Multicopper oxidase mco [Phytophthora nicotianae])

HSP 1 Score: 97.8265 bits (242), Expect = 1.450e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0
Query:  150 ELRQPEIRRAVDGVLDTTLRIQPARITNGPVSYSTRTYEGTVPGPTLLLRPGETLRIHQINGLAPEQLKRSQVVPQTLHWPNTTTIHTHGLHIDPSG 246
            EL   E R +V+G L+TT+ +    + NGP+++ TR YE +VPGP L+L+PG+ L IH +N LAP      +  P T+H PN T +H HG+H+DP+G
Sbjct:  123 ELPTLETRASVNGELNTTITVAEKLVDNGPIAFYTRAYEDSVPGPMLVLKPGDVLNIHLVNNLAPN--VAGEWTPNTMHEPNNTNLHFHGMHVDPTG 217          
The following BLAST results are available for this feature:
BLAST of EWM27798.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110097|gb|EWM27798.1|0.000e+0100.00multicopper oxidase [Nannochloropsis gaditana][more]
gi|1173959115|gb|OQS05383.1|7.383e-2348.98hypothetical protein THRCLA_02473, partial [Thraus... [more]
gi|1173936338|gb|OQR87300.1|8.529e-2336.70hypothetical protein ACHHYP_09146 [Achlya hypogyna... [more]
gi|1173938582|gb|OQR88771.1|1.386e-2046.94hypothetical protein THRCLA_10113, partial [Thraus... [more]
gi|695390627|ref|XP_009519772.1|1.484e-2035.43hypothetical protein PHYSODRAFT_554641 [Phytophtho... [more]
gi|1214683476|gb|OWZ01339.1|1.685e-2048.45hypothetical protein PHMEG_00027294, partial [Phyt... [more]
gi|568038215|gb|ETM35755.1|1.281e-1945.36hypothetical protein L914_17392 [Phytophthora para... [more]
gi|970649674|gb|KUF88881.1|1.423e-1945.36Multicopper oxidase mco [Phytophthora nicotianae] ... [more]
gi|567950150|gb|ETK75868.1|1.436e-1945.36hypothetical protein L915_17597 [Phytophthora para... [more]
gi|566012700|gb|ETI35611.1|1.450e-1945.36hypothetical protein F443_18076 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2883rna2883Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications