rna2871, rna2871 (mRNA) Nannochloropsis gaditana

Overview
Namerna2871
Unique Namerna2871
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1379
Alignment locationCM002460.1:117798..118598 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101609g1.2324.mrna
Orig protein idgnl|cribi|Naga_101609g1.2324
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:117798..118598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101609g1gene2748Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2871rna2871-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27809.1cds2863Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2871 ID=rna2871|Name=rna2871|organism=Nannochloropsis gaditana|type=mRNA|length=1379bp
GCTTCGTTTTGAACACGCGCAACGGGCCCACCTCTTCTTTTGCTAGTATC
CTCTTTCTTTTGTTCCCACTGTCAACTTCACATCCACCTTACGTCAGTGC
ACAGAAGAGTCCTTGAAATGGCCGCAACATCGTCTTTAACCGAAGAACAA
GAGATTTTAGCCGAGCTCGCAGAAGAATTGGGTTCGCTTTCCTCAGGTGC
CCCATCGCCTTTGGGAGGGCCCGTGTCGAGTGCGAGAATACCGAACCACA
CGGCCGTGGAGGACAGCACCAATGGCAACCACGTGATAAGCGGACACTCA
AATGGTAGTAATGATGACGAGGACGATGAAGATGGCGGGAGCCTTCTGCT
TCCTCCGCCGTCCTTGGAAGGGCCTGCCGACACGGGCGACCTTCACGACC
TGGAAGACCCACTTCTGACGACGGAGAGGAAAAGCGAGGATGAAAGCGCC
TTCCCCTTCCACCCGCCCGCATCGTCTGGTGTGAGGCTCTTGGATGACGT
GGAAGGAGTGGACGGTGAGGGAGGGCACAAGGAAGAGGATGAGAAAGGGC
TCCAAGTGTTGGGTGACCTCCCGGAGAGTGGGATAGGACGGGGCAAAGAT
GAAGCATTGCTGGCATCCAAAGGCAAAGCCACCGTGCCAGAAGTCCCGCA
ACGCATGATAACCATGTCCTTACGGCCTCCTCGGCAACGGCGGCGGTACG
ACGGCTTCGCTACCTCGTTGCAGGGGAAGGAAGAGGAGGAGGAAGGGGAG
GGCGAGGGGGAGGAAGGGGAGGAAGGGAGGGGCGGGAGCCGCGCGCGTCG
AAACGGGCAGCCTGTCCGGGGCGAAACATCGTCCGCAGCGGTTAGGGGAG
GGCGAAGTGGTGGGGGCGTGGGCCGTGGATCGGGAGTGAGTCGAAGCAAC
AGTGTGAGTAGCAGCGGGAGCAGCAATAGCGGAGGCATGCATTTGACCCA
GCAACCCTTCAATTCCGCCGTCTGTAAAAAACGTCTGTACGGCCCAGGAC
GAGGCCGGTGGAAGCGTCGACGCTTCGATGGCAACGGTTTCATTGACGAT
TACACCTCGGAAGTCAGTACTCCCGCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCGCCCCTCCCTGCTTTCTTTTCTTCCTGCCACTTCCC
GTTTTCTCCGTCGTGCTCCTTGTCACCTGTGTATATTCTGTCGCCCTCCC
TTCCTCCCTCCCTTCCTCCCTCCCTGCCTCCCTTCCCTCCTCCCTCCCTG
CAGCTTCTTTTCCGACGGCCTTTTCCCTCCCCTCCCCCCTCCCTCCCTCC
CTCCCTCGTCCCCTCTCTCCCCCAGGTCCTCCGCCTCCTTCAAACCCGGG
CCCGCTGTCCTTCGACGAGATCTACGACG
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protein sequence of rna2871

>rna2871-protein ID=rna2871-protein|Name=rna2871|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
LPPPPPPFPQPIAVHLHGRPEGPQTYRNGRSQGGGRHLGGDRGRAPSPHL
SPAQGADGLEGRETGGRERGREGGREGRRGGEAYPWEAGSVGGVDTGHGR
GARKGGREGEREGTDGCEPYLSGSIVGVGGARIRWEEGQEGGREEGHGQG
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mRNA from alignment at CM002460.1:117798..118598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2871 ID=rna2871|Name=rna2871|organism=Nannochloropsis gaditana|type=mRNA|length=801bp|location=Sequence derived from alignment at CM002460.1:117798..118598+ (Nannochloropsis gaditana)
ctccctcctcctcctcctcctttccctcagccCATTGCTGTACACCTTCA
TGGACGGCCAGAAGGTCCCCAAACCTATCGAAATGGTCGgtctcaaggag
gaggcagacaCCTTGGAGGCGACCGAGGACGAGCTCCGTCGCCGCATCTC
TCTCCTGCGCAGGGAGCTGACGGTcttgaaggaagggagacgggagggag
ggagagagggagggagggagggagggagggaaggagggggggagaagcat
ACCCATGGGAGGCAGGCAGCGTTGGAGGTGTTGACACGGGTCATGGGCGA
GgggccaggaagggagggcgagagggagagcgggagggaacggaTGGCTG
CGAACCCTATTTATCGGGCAGCATTGTTGGCGTTGGGGGTGCACGTATaa
ggtgggaagaagggcaggagggagggcgggaggaaggccatggtCAGGGG
TAGGTTGAGGCCTAAAGCATCATCACTCactcttccctttcagccGGGTG
TTTCTCGTGGCTGGGGCGTGACGGCCTCTGTCGCCGATGCCGGCAGGAGT
GGCTGCAGTGAACGTGAAGGAAGGCTTGGGCGTTCCCGCCGAAATTTTGT
TAAGGTGGCAAGAGTAGTCTATGTGGAGGGGACGCTGTCTTCCTTTGGAG
ACACGGTTCCCCACGCCTGGCACGCAGAATGAGCatagagaaagaagggg
agggatgccCCAAAATCTATGAAGAGCAAGGCCACAAATTatgtgaagaa
aaaaaatgccaGAAATTATACAGACAGGATGGGTACCGTATAAATGAAAG
A
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Coding sequence (CDS) from alignment at CM002460.1:117798..118598+

>rna2871 ID=rna2871|Name=rna2871|organism=Nannochloropsis gaditana|type=CDS|length=453bp|location=Sequence derived from alignment at CM002460.1:117798..118598+ (Nannochloropsis gaditana)
ctccctcctcctcctcctcctttccctcagccCATTGCTGTACACCTTCA
TGGACGGCCAGAAGGTCCCCAAACCTATCGAAATGGTCGgtctcaaggag
gaggcagacaCCTTGGAGGCGACCGAGGACGAGCTCCGTCGCCGCATCTC
TCTCCTGCGCAGGGAGCTGACGGTcttgaaggaagggagacgggagggag
ggagagagggagggagggagggagggagggaaggagggggggagaagcat
ACCCATGGGAGGCAGGCAGCGTTGGAGGTGTTGACACGGGTCATGGGCGA
GgggccaggaagggagggcgagagggagagcgggagggaacggaTGGCTG
CGAACCCTATTTATCGGGCAGCATTGTTGGCGTTGGGGGTGCACGTATaa
ggtgggaagaagggcaggagggagggcgggaggaaggccatggtCAGGGG
TAG
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Synonyms
Publications