EWM27814.1, cds2859 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|585110120|gb|EWM27814.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 141.354 bits (355), Expect = 1.143e-42 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query: 1 MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRERGEEREEDAIRR 69
MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRERGEEREEDAIRR
Sbjct: 1 MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRERGEEREEDAIRR 69
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|219119758|ref|XP_002180632.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408105|gb|EEC48040.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 87.4261 bits (215), Expect = 8.964e-19 Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
P+S INPDHL++FRFVGR++GKA+SD +LLDAHFTRS YKH+LG TH DME
Sbjct: 105 PNSSINPDHLSYFRFVGRIVGKAVSDGYLLDAHFTRSLYKHMLGLKPTHHDMEA 158
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1072231746|gb|OEU16478.1| (HUWE1 protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 85.1149 bits (209), Expect = 6.361e-18 Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
PSS +NPDHL++FRFVGR++GKA++D +LLD+HFTRS YKH+LG TH DME
Sbjct: 107 PSSSVNPDHLSYFRFVGRIVGKAVADGYLLDSHFTRSLYKHMLGIEPTHHDMEA 160
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1210527798|dbj|GAX13555.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris]) HSP 1 Score: 85.5001 bits (210), Expect = 6.800e-18 Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
P+S INPDHL++FRFVGR++GKA+ D LLDAHFTRS YKH+LG TH DME
Sbjct: 3854 PNSSINPDHLSYFRFVGRIVGKAVVDGFLLDAHFTRSLYKHMLGVEPTHEDMEA 3907
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1210512703|dbj|GAX28293.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris]) HSP 1 Score: 85.5001 bits (210), Expect = 6.800e-18 Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
P+S INPDHL++FRFVGR++GKA+ D LLDAHFTRS YKH+LG TH DME
Sbjct: 3854 PNSSINPDHLSYFRFVGRIVGKAVVDGFLLDAHFTRSLYKHMLGVEPTHEDMEA 3907
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|729698892|emb|CEJ03921.1| (Putative E3 ubiquitin-protein ligase HUWE1 [Rhizopus microsporus]) HSP 1 Score: 82.4185 bits (202), Expect = 3.356e-17 Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0
Query: 3 SSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
+S +NPDHL++F+FVGRV+GKA+ D LLDA+FTRSFYKHILG V +RD+E
Sbjct: 24 ASAVNPDHLSYFKFVGRVIGKAIYDGRLLDAYFTRSFYKHILGRPVDYRDVEA 76
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1121842897|ref|XP_019467245.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1, partial [Meleagris gallopavo]) HSP 1 Score: 77.7962 bits (190), Expect = 4.769e-17 Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRE 57
PSS NP+HL++F+FVGR++ KA+ D+ LL+ +FTRSFYKHILG +V + DME +
Sbjct: 29 PSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 84
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|723572861|ref|XP_010306314.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1, partial [Balearica regulorum gibbericeps]) HSP 1 Score: 78.5666 bits (192), Expect = 6.255e-17 Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRE 57
PSS NP+HL++F+FVGR++ KA+ D+ LL+ +FTRSFYKHILG +V + DME +
Sbjct: 4 PSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 59
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|944217136|gb|KQK82873.1| (E3 ubiquitin-protein ligase HUWE1 [Amazona aestiva]) HSP 1 Score: 77.7962 bits (190), Expect = 7.578e-17 Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRE 57
PSS NP+HL++F+FVGR++ KA+ D+ LL+ +FTRSFYKHILG +V + DME +
Sbjct: 29 PSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 84
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1026272410|gb|OAD05450.1| (hypothetical protein MUCCIDRAFT_10111, partial [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 82.0333 bits (201), Expect = 1.176e-16 Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0
Query: 4 SPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
S +NPDHL+ F+FVGRV+GKA+ D LLDA+FTRSFYKHILG V +RD+E
Sbjct: 717 SAVNPDHLSFFKFVGRVIGKAIYDGRLLDAYFTRSFYKHILGRTVDYRDVEA 768 The following BLAST results are available for this feature:
BLAST of EWM27814.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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