rna2867, rna2867 (mRNA) Nannochloropsis gaditana

Overview
Namerna2867
Unique Namerna2867
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length409
Alignment locationCM002460.1:110040..110363 +

Link to JBrowse

Properties
Property NameValue
Producte3 ubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_103734g1.1371.mrna
Orig protein idgnl|cribi|Naga_103734g1.1371
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:110040..110363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103734g1gene2743Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2867rna2867-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27814.1cds2859Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2867 ID=rna2867|Name=rna2867|organism=Nannochloropsis gaditana|type=mRNA|length=409bp
GCAGCCTCCTCTTGAACGCCCTCATCCGTCAGAATCCGTCTCTGCTCGAC
AAGGGGCTATGTCCCTTGGTGCTTATTCCCCAATGCCGAGCCTTCTTGGA
CTTCGAGAACAAGAAAGCTTACTTCCGGACACAGATCAACAAGTTCAAGA
AGCACAAGTACCGACGGGCGCACCCCTTGCAGCTCCGGGTCCGACGGCAA
ATGGTTTACGACGACTCCTTCCAACAGCTCTCGCTCCGCACAGCGGACGA
GATGCGTGGGAAGCTTCAAGTCTCTTTCTACGGCGAGGAGGGTGCGTGCT
TCGCCTTTCTTCTTTCCCGTTCCCTCCCTCCCTGCTTCTTGCTTTCCCTC
GTCCACAATTAGCCTCCTGAATGCCTTCGATCATTTCCTCAATTTCTTGC
CTCCCTTCC
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protein sequence of rna2867

>rna2867-protein ID=rna2867-protein|Name=rna2867|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTH
RDMEGRERGEEREEDAIRR
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mRNA from alignment at CM002460.1:110040..110363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2867 ID=rna2867|Name=rna2867|organism=Nannochloropsis gaditana|type=mRNA|length=324bp|location=Sequence derived from alignment at CM002460.1:110040..110363+ (Nannochloropsis gaditana)
ATGCCCTCTTCACCGTCGCCTCGGACGGGGCCACCTACCAACCCAACCCC
ACCTCCAGCATCAATCCGGACCATTTGGCGCATTTCCGCTTTGTAGGTCG
CGTCTTGGGGAAGGCTTTGAGCGACGACCACCTCCTGGACGCGCACTTCA
CCCGGTCATTCTACAAGCACATTCTGGGGGCAGCGGTCACGCACCGCGAC
ATGGAGGtgcgtggaagggggggctggaGTCGGCATGGGCCCAGACTGGG
ATCACGCTGGCAGagggtggatggaggggcgagaaagaggagaggaaagg
gaggaggatgcgatACGGAGATAG
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Coding sequence (CDS) from alignment at CM002460.1:110040..110363+

>rna2867 ID=rna2867|Name=rna2867|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002460.1:110040..110363+ (Nannochloropsis gaditana)
ATGCCCTCTTCACCCATCAATCCGGACCATTTGGCGCATTTCCGCTTTGT
AGGTCGCGTCTTGGGGAAGGCTTTGAGCGACGACCACCTCCTGGACGCGC
ACTTCACCCGGTCATTCTACAAGCACATTCTGGGGGCAGCGGTCACGCAC
CGCGACATGGAGgggcgagaaagaggagaggaaagggaggaggatgcgat
ACGGAGATAGATGCCCTCTTCACCCATCAATCCGGACCATTTGGCGCATT
TCCGCTTTGTAGGTCGCGTCTTGGGGAAGGCTTTGAGCGACGACCACCTC
CTGGACGCGCACTTCACCCGGTCATTCTACAAGCACATTCTGGGGGCAGC
GGTCACGCACCGCGACATGGAGgggcgagaaagaggagaggaaagggagg
aggatgcgatACGGAGATAGATGCCCTCTTCACCCATCAATCCGGACCAT
TTGGCGCATTTCCGCTTTGTAGGTCGCGTCTTGGGGAAGGCTTTGAGCGA
CGACCACCTCCTGGACGCGCACTTCACCCGGTCATTCTACAAGCACATTC
TGGGGGCAGCGGTCACGCACCGCGACATGGAGgggcgagaaagaggagag
gaaagggaggaggatgcgatACGGAGATAG
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Synonyms
Publications