EWM27814.1, cds2859 (CDS) Nannochloropsis gaditana

Overview
NameEWM27814.1
Unique Namecds2859
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:110040..110053 +
Alignment locationCM002460.1:110098..110245 +
Alignment locationCM002460.1:110316..110363 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27814.1
Producte3 ubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_103734g1.1371.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:110040..110053 +
CM002460.1supercontigCM002460.1:110098..110245 +
CM002460.1supercontigCM002460.1:110316..110363 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|585110120|gb|EWM27814.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 141.354 bits (355), Expect = 1.143e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query:    1 MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRERGEEREEDAIRR 69
            MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRERGEEREEDAIRR
Sbjct:    1 MPSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRERGEEREEDAIRR 69          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|219119758|ref|XP_002180632.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408105|gb|EEC48040.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.4261 bits (215), Expect = 8.964e-19
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
            P+S INPDHL++FRFVGR++GKA+SD +LLDAHFTRS YKH+LG   TH DME 
Sbjct:  105 PNSSINPDHLSYFRFVGRIVGKAVSDGYLLDAHFTRSLYKHMLGLKPTHHDMEA 158          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1072231746|gb|OEU16478.1| (HUWE1 protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.1149 bits (209), Expect = 6.361e-18
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
            PSS +NPDHL++FRFVGR++GKA++D +LLD+HFTRS YKH+LG   TH DME 
Sbjct:  107 PSSSVNPDHLSYFRFVGRIVGKAVADGYLLDSHFTRSLYKHMLGIEPTHHDMEA 160          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1210527798|dbj|GAX13555.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris])

HSP 1 Score: 85.5001 bits (210), Expect = 6.800e-18
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
            P+S INPDHL++FRFVGR++GKA+ D  LLDAHFTRS YKH+LG   TH DME 
Sbjct: 3854 PNSSINPDHLSYFRFVGRIVGKAVVDGFLLDAHFTRSLYKHMLGVEPTHEDMEA 3907          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1210512703|dbj|GAX28293.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris])

HSP 1 Score: 85.5001 bits (210), Expect = 6.800e-18
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
            P+S INPDHL++FRFVGR++GKA+ D  LLDAHFTRS YKH+LG   TH DME 
Sbjct: 3854 PNSSINPDHLSYFRFVGRIVGKAVVDGFLLDAHFTRSLYKHMLGVEPTHEDMEA 3907          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|729698892|emb|CEJ03921.1| (Putative E3 ubiquitin-protein ligase HUWE1 [Rhizopus microsporus])

HSP 1 Score: 82.4185 bits (202), Expect = 3.356e-17
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    3 SSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
            +S +NPDHL++F+FVGRV+GKA+ D  LLDA+FTRSFYKHILG  V +RD+E 
Sbjct:   24 ASAVNPDHLSYFKFVGRVIGKAIYDGRLLDAYFTRSFYKHILGRPVDYRDVEA 76          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1121842897|ref|XP_019467245.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1, partial [Meleagris gallopavo])

HSP 1 Score: 77.7962 bits (190), Expect = 4.769e-17
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRE 57
            PSS  NP+HL++F+FVGR++ KA+ D+ LL+ +FTRSFYKHILG +V + DME  +
Sbjct:   29 PSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 84          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|723572861|ref|XP_010306314.1| (PREDICTED: E3 ubiquitin-protein ligase HUWE1, partial [Balearica regulorum gibbericeps])

HSP 1 Score: 78.5666 bits (192), Expect = 6.255e-17
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRE 57
            PSS  NP+HL++F+FVGR++ KA+ D+ LL+ +FTRSFYKHILG +V + DME  +
Sbjct:    4 PSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 59          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|944217136|gb|KQK82873.1| (E3 ubiquitin-protein ligase HUWE1 [Amazona aestiva])

HSP 1 Score: 77.7962 bits (190), Expect = 7.578e-17
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    2 PSSPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEGRE 57
            PSS  NP+HL++F+FVGR++ KA+ D+ LL+ +FTRSFYKHILG +V + DME  +
Sbjct:   29 PSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 84          
BLAST of EWM27814.1 vs. NCBI_GenBank
Match: gi|1026272410|gb|OAD05450.1| (hypothetical protein MUCCIDRAFT_10111, partial [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 82.0333 bits (201), Expect = 1.176e-16
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    4 SPINPDHLAHFRFVGRVLGKALSDDHLLDAHFTRSFYKHILGAAVTHRDMEG 55
            S +NPDHL+ F+FVGRV+GKA+ D  LLDA+FTRSFYKHILG  V +RD+E 
Sbjct:  717 SAVNPDHLSFFKFVGRVIGKAIYDGRLLDAYFTRSFYKHILGRTVDYRDVEA 768          
The following BLAST results are available for this feature:
BLAST of EWM27814.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110120|gb|EWM27814.1|1.143e-42100.00e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
gi|219119758|ref|XP_002180632.1|8.964e-1970.37predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072231746|gb|OEU16478.1|6.361e-1866.67HUWE1 protein [Fragilariopsis cylindrus CCMP1102][more]
gi|1210527798|dbj|GAX13555.1|6.800e-1868.52E3 ubiquitin-protein ligase HUWE1 [Fistulifera sol... [more]
gi|1210512703|dbj|GAX28293.1|6.800e-1868.52E3 ubiquitin-protein ligase HUWE1 [Fistulifera sol... [more]
gi|729698892|emb|CEJ03921.1|3.356e-1766.04Putative E3 ubiquitin-protein ligase HUWE1 [Rhizop... [more]
gi|1121842897|ref|XP_019467245.1|4.769e-1757.14PREDICTED: E3 ubiquitin-protein ligase HUWE1, part... [more]
gi|723572861|ref|XP_010306314.1|6.255e-1757.14PREDICTED: E3 ubiquitin-protein ligase HUWE1, part... [more]
gi|944217136|gb|KQK82873.1|7.578e-1757.14E3 ubiquitin-protein ligase HUWE1 [Amazona aestiva... [more]
gi|1026272410|gb|OAD05450.1|1.176e-1667.31hypothetical protein MUCCIDRAFT_10111, partial [Mu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2867rna2867Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications