EWM27865.1, cds2811 (CDS) Nannochloropsis gaditana

Overview
NameEWM27865.1
Unique Namecds2811
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1324168..1325232 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27865.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100282g2.5220.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1324168..1325232 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27865.1 vs. NCBI_GenBank
Match: gi|585110193|gb|EWM27864.1| (hypothetical protein Naga_100282g2 [Nannochloropsis gaditana])

HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0 
Query:    1 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE 354
            MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE
Sbjct:   72 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE 425
[Close]
BLAST of EWM27865.1 vs. NCBI_GenBank
Match: gi|585110194|gb|EWM27865.1| (hypothetical protein Naga_100282g2 [Nannochloropsis gaditana])

HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0 
Query:    1 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE 354
            MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE
Sbjct:    1 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE 354
[Close]
BLAST of EWM27865.1 vs. NCBI_GenBank
Match: gi|553192042|ref|XP_005855504.1| (hypothetical protein NGA_0675300 [Nannochloropsis gaditana CCMP526] >gi|422293562|gb|EKU20862.1| hypothetical protein NGA_0675300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 352/354 (99.44%), Postives = 352/354 (99.44%), Query Frame = 0 
Query:    1 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE 354
            MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGG NSQHSQILPAQPQKSAEMTVA GSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE
Sbjct:   72 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGGNSQHSQILPAQPQKSAEMTVATGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHRKTGE 425
[Close]
BLAST of EWM27865.1 vs. NCBI_GenBank
Match: gi|553195443|ref|XP_005856147.1| (hypothetical protein NGA_0248700, partial [Nannochloropsis gaditana CCMP526] >gi|422292914|gb|EKU20215.1| hypothetical protein NGA_0248700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 692.96 bits (1787), Expect = 0.000e+0
Identity = 345/347 (99.42%), Postives = 345/347 (99.42%), Query Frame = 0 
Query:    1 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTG 347
            MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGG NSQHSQILPAQPQKSAEMTVA GSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTG
Sbjct:   72 MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVGYGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTELLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQSEGDKENRGTLQGDGGGGNSQHSQILPAQPQKSAEMTVATGSTSMVALLEGAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKDHGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTASVPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTG 418
The following BLAST results are available for this feature:
BLAST of EWM27865.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585110193|gb|EWM27864.1|0.000e+0100.00hypothetical protein Naga_100282g2 [Nannochloropsi... [more]
gi|585110194|gb|EWM27865.1|0.000e+0100.00hypothetical protein Naga_100282g2 [Nannochloropsi... [more]
gi|553192042|ref|XP_005855504.1|0.000e+099.44hypothetical protein NGA_0675300 [Nannochloropsis ... [more]
gi|553195443|ref|XP_005856147.1|0.000e+099.42hypothetical protein NGA_0248700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2819rna2819Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications