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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100282g2.5220.mrna |
| Orig protein id | gnl|cribi|Naga_100282g2.5220 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:1323392..1325883 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2819 ID=rna2819|Name=rna2819|organism=Nannochloropsis gaditana|type=mRNA|length=1952bp
TGCAAAGACTTTACTGGAGCAAAATGTATGCCACCAACACGGAGAAGCGC
AGGGTGAAGGCTATCAACAAGCACTATCGCAAGCTCTCTGTCCGTAAAGA
CTTCGGAATGCATGGTAGCTTTTCAGGCCATATTACGGATTGCTGGGTGG
CGCATTCCGGGCAGGAATATGCGCATGTGCTGTACGTGGACGGGGATGAG
GAGGACATTCCCTTACAGGAGGTGAGAAATTTTTTAATGGCACCGTTGCC
CCCCACGCCACCGACCTCCCCACGGTCTTCATCGGCCCCGAGCAGCGAAA
GCAGTGGAAGGGAGGAGAAGGAATGCGAAGCACTTAAGGAACTAGCCATT
GGAGCACGCTCCTCTATCACCTTGTGTCGTGTGGGGTATGGTAGAACAGA
AGGGATAGAAGCGGAAACAATCACCACGACAGCTTCCTCCGCCCCTGCAT
CTTGTGCGATCCCTCCTTCTGGGGAAATGTTCTGTCAAGAGAATGCCAGC
CCGGATGTTGACGAGGCAAAGGAAGCATCGACTGAGCTTTTGGAGGAAGA
CGGAGCGTGTGAAGCAGAGGGGGGAATCGAGAAGAGGAAGGATCACGAAA
TGAAAGAGGCAGGCAAGGAAAAGGAACAGGCGCTATGCGACAGGGAACGG
GAGAAGGCATGCCAGTCGCCTGTCCGGCGGCATCAGAGCGAAGGTGATAA
GGAGAACAGGGGGACGTTACAGGGTGATGGAGGAGGGGTCAACTCCCAGC
ATTCCCAGATCCTTCCGGCGCAGCCCCAAAAATCAGCAGAAATGACAGTG
GCAGCAGGATCAACGTCGATGGTGGCACTTCTTGAAGGGGCTGTAATAGC
AGAAGTGACCACTTTAGGAGGAAACGCTGCAGCATCAGCGACAGAAACAG
CCACAGATGAGCCTTCATCCCATCCCTTTACGGCATCCTCTGTTTCTTCC
CTTGCGCCCTCTCTACCTGCCTGCGCCTCTAAAGATCATGGAGGCGACTG
CTCGACGGGCAAACACGGTCATCACACTGACAGCACAAGGACTTCGACAG
CCAATGCGCTCCATCCACGTCCATTCAATTTCTCTGATCCCCTCCCTCGC
AGTCCTCCGTCCGCGCTGCCGTCATCCACAGCTTCTGTACCACTCCCAGC
AAATGAAATGGTAGGGACAGGGAATTCCATCGGTGCCGCTCGACCGGGAA
AGGAGCTTACAGATTACAAGCCTCTTGTCGGCCGCTTCGTGCAGAAAGCC
GTGGAGGGGGGAGGGAAGGTCACGGGTAAGCATCGCAAGACCGGTGAATA
GAGAAAAGAGTTCTGAAAGGGCAATGCCAAAGCGATAAACTCACCGTCCT
CATGGATGTAGAATGGGGATGTCGTAGCTATGGAACAGCTGGAGTCATAA
GCTTACAAGATCGGACCGGTCTTTGTGCTCTGCCTACTCATAAATAATTC
TGTTCTCATGTTCCTCCCCTTTCCTCTCCCATTTCTCCCGCTGGCCCTTT
GTTGCAGGTATGGTGGTGGAGGTGAGGGCAAAAGGATCCAAGGAATCGCG
GCGAGTGTGGGCACGTGTCACGTACACTGACAAGACGGAACAGGACCTTG
ATGTGTAAGTGGGGTGGGTGGTGAAAGTGACAGGGACTAGGACATAGTCG
ACGCCTCGGGATCCATTCGACTGACATTCAGAGCGCCCCATATACCCGCC
TTCTCGACAGTGACGATTTGATACCGCTTTTGAAGCCCAGAAGGGGGAAA
AAACAAGAGTAAAGCCGCAGTTCGTGAGGAAAAGAAACATCAAAATAAAG
GCTTCGATAACAGGTCAATTTCACGCTTTTTGTTGCTGCGCATTGTTGTT
AATTCTTTCCTCAAGAATTCTTTCATCTTTGCCACGCACCACTTCCACCT
TTTCCTCCTTCATATCCGTCTTTTTGACAGCCGTGCCTCCCACTCTGCGT
GA back to topprotein sequence of rna2819 >rna2819-protein ID=rna2819-protein|Name=rna2819|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MAPLPPTPPTSPRSSSAPSSESSGREEKECEALKELAIGARSSITLCRVG
YGRTEGIEAETITTTASSAPASCAIPPSGEMFCQENASPDVDEAKEASTE
LLEEDGACEAEGGIEKRKDHEMKEAGKEKEQALCDREREKACQSPVRRHQ
SEGDKENRGTLQGDGGGVNSQHSQILPAQPQKSAEMTVAAGSTSMVALLE
GAVIAEVTTLGGNAAASATETATDEPSSHPFTASSVSSLAPSLPACASKD
HGGDCSTGKHGHHTDSTRTSTANALHPRPFNFSDPLPRSPPSALPSSTAS
VPLPANEMVGTGNSIGAARPGKELTDYKPLVGRFVQKAVEGGGKVTGKHR
KTGE back to topmRNA from alignment at CM002459.1:1323392..1325883+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2819 ID=rna2819|Name=rna2819|organism=Nannochloropsis gaditana|type=mRNA|length=2492bp|location=Sequence derived from alignment at CM002459.1:1323392..1325883+ (Nannochloropsis gaditana)
GTTGATAGCTCTTTAATGTTTTGGGGGGATCCCTCACGTTCGGGCCATGT
GAAAGTCATATAAGCTCAAACACGATGTCCATCCCATATTTTCATGTGCT
CCCACTCCGATGTGTATTTATTCTTTGTAAACATCTGTCATCGTTCCATG
CTCCCCTTCTGTCTGATCATGTTTGCCAATTAAAACGCGTCGGAAACTTC
AGGCTATCAACAAGCACTATCGCAAGCTCTCTGTCCGTAAAGACTTCGGA
ATGCATGGTAGCTTTTCAGGTGCGTTTGAGCAAATGATGCATACGAAGGG
ATATAGTAGTGCTTATCTCGCAAACTTCGCCGCAAAGAGGAACTTTGATC
TCTGAGCGCAATTAGCCTGTGAGTACAGGGAAGGTTATCATATGCCACCC
TCATCTCCGCACTTGACATTCCATTAGGCCATATTACGGATTGCTGGGTG
GCGCATTCCGGGCAGGAATATGCGCATGTGCTGTACGTGgacggggatga
ggaggacattCCCTTACAGGAGGTAGGACCGTGTCGAACTTCTGTATGCC
TccagcgggggagggatgaggggcgCGTCGAGACATTGACGTAAAAACTA
GAGGGAGCGAAAGTGAAGATGTGAGATGTTGATAGGATAGCTGGGCAGAA
AAGTAATGGGAGATCTAGACAGTTTCATAATGGCTATCTTAATAGCGtta
aggaagggagaaggttgTTACTGTGAGTTTAATTGTTATTTTTTGGTCTC
TGAACCCGCAGGTGAGAAATTTTTTAATGGCACCGTTGCCCCCCACGCCA
CCGACCTCCCCACGGTCTTCATCGGCCCCGAGCAGCGAAAgcagtggaag
ggaggagaaggaatgcGAAGCACTTAAGGAACTAGCCATTGGAGCACGCT
CCTCTATCACCTTGTGTCGTGTGGGGTATGGTAGAACAGAAGGGATAGAA
GCGGAAACAATCACCACgacagcttcctccgcccctgcaTCTTGTGCGAT
CCCTCCTTCTGGGGAAATGTTCTGTCAAGAGAATGCCAGCCCGGATGTTG
ACGAGGCAAAGGAAGCATCGACTGAGCttttggaggaagacggagcgTGT
GAAGCAGAGGGGGGAatcgagaagaggaaggatcACGAAATGAAagaggc
aggcaaggaaaaggaacagGCGCTATGCGACAGGGAACGGGAGAAGGCAT
GCCAGTCGCCTGTCCGGCGGCATCAGAGCGAAGGTGATAAGGAGAACAGG
GGGACGTTACagggtgatggaggaggggtcaaCTCCCAGCATTCCCAGAT
CCTTCCGGCGCAGCCCCAAAAATCAGCAGAAATGACAGTGGCAGCAGGAT
CAACGTCGATGGTGGCACTTCTTGAAGGGGCTGTAATAGCAGAAGTGACC
ACTTTAGGAGGAAACGCTGCAGCATCAGCGACAGAAACAGCCACAGATGA
GCCTTCATCCCATCCCTTTACGGCATCCTCTGTTTCTTCCCTTGCGCCCT
CTCTACCTGCCTGCGCCTCTAAAGATCATGGAGGCGACTGCTCGACGGGC
AAACACGGTCATCACACTGACAGCACAAGGACTTCGACAGCCAATGCGCT
CCATCCACGTCCATTCAATTTCTCtgatcccctccctcgcagtCCTCCGT
CCGCGCTGCCGTCATCCACAGCTTCTGTACCACTCCCAGCAAATGAAATG
GTAGGGACAGGGAATTCCATCGGTGCCGCTCGACCGGGAAAGGAGCTTAC
AGATTACAAGCCTCTTGTCGGCCGCTTCGTGCAGAAagccgtggaggggg
gagggaaggtcacGGGTAAGCATCGCAAGACCGGTGAATAGAGAAAAGAG
TTCTGAAAGGGCAATGCCAAAGCGATAAACTCACCGTCCTCATGGATGTA
GAATGGGGATGTCGTAGCTATGGAACAGCTGGAGTCATAAGCTTACAAGA
TCGGACCGGTCTTTGTGCTCTGCCTACTCATAAATAATTCTGTTCTCAtg
ttcctcccctttcctctcccatttcTCCCGCTGGCCCTTTGTTGCAGGta
tggtggtggaggtgagggCAAAAGGATCCAAGGAATCGCGGCGAGTGTGG
GCACGTGTCACGTACACTGACAAGACGGAACAGGACCTTGATGTGTAAGT
GGGGTGGGTGGTGAAAGTGACAGGGACTAGGACATAGTCGACGCCTCGGG
ATCCATTCGACTGACATTCAGAGCGCCCCATATACCCGCCTTCTCGACAG
TGACGATTTGATACCGCTTTTGAAGCccagaagggggaaaaaacaagAGT
AAAGCCGCAGTTCGTGAGGAAAAGAAACATCAAAATAAAGGCTTCGATAA
CAGGTCAATTTCACGCTTTTTGTTGCTGCGCATTGTTGTTAATTCTTTCC
TCAAGAATTCTTTCATCTTTGCCACGCACCACttccaccttttcctcctt
catatCCGTCTTTTTGACAGCCGTGCCTCCCACTCTGCGTGA back to topCoding sequence (CDS) from alignment at CM002459.1:1323392..1325883+ >rna2819 ID=rna2819|Name=rna2819|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002459.1:1323392..1325883+ (Nannochloropsis gaditana)
ATGGCACCGTTGCCCCCCACGCCACCGACCTCCCCACGGTCTTCATCGGC
CCCGAGCAGCGAAAgcagtggaagggaggagaaggaatgcGAAGCACTTA
AGGAACTAGCCATTGGAGCACGCTCCTCTATCACCTTGTGTCGTGTGGGG
TATGGTAGAACAGAAGGGATAGAAGCGGAAACAATCACCACgacagcttc
ctccgcccctgcaTCTTGTGCGATCCCTCCTTCTGGGGAAATGTTCTGTC
AAGAGAATGCCAGCCCGGATGTTGACGAGGCAAAGGAAGCATCGACTGAG
CttttggaggaagacggagcgTGTGAAGCAGAGGGGGGAatcgagaagag
gaaggatcACGAAATGAAagaggcaggcaaggaaaaggaacagGCGCTAT
GCGACAGGGAACGGGAGAAGGCATGCCAGTCGCCTGTCCGGCGGCATCAG
AGCGAAGGTGATAAGGAGAACAGGGGGACGTTACagggtgatggaggagg
ggtcaaCTCCCAGCATTCCCAGATCCTTCCGGCGCAGCCCCAAAAATCAG
CAGAAATGACAGTGGCAGCAGGATCAACGTCGATGGTGGCACTTCTTGAA
GGGGCTGTAATAGCAGAAGTGACCACTTTAGGAGGAAACGCTGCAGCATC
AGCGACAGAAACAGCCACAGATGAGCCTTCATCCCATCCCTTTACGGCAT
CCTCTGTTTCTTCCCTTGCGCCCTCTCTACCTGCCTGCGCCTCTAAAGAT
CATGGAGGCGACTGCTCGACGGGCAAACACGGTCATCACACTGACAGCAC
AAGGACTTCGACAGCCAATGCGCTCCATCCACGTCCATTCAATTTCTCtg
atcccctccctcgcagtCCTCCGTCCGCGCTGCCGTCATCCACAGCTTCT
GTACCACTCCCAGCAAATGAAATGGTAGGGACAGGGAATTCCATCGGTGC
CGCTCGACCGGGAAAGGAGCTTACAGATTACAAGCCTCTTGTCGGCCGCT
TCGTGCAGAAagccgtggaggggggagggaaggtcacGGGTAAGCATCGC
AAGACCGGTGAATAG back to top
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