EWM27896.1, cds2776 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|553184376|ref|XP_005854076.1| (hypothetical protein NGA_0219302, partial [Nannochloropsis gaditana CCMP526] >gi|553186762|ref|XP_005854484.1| hypothetical protein NGA_0219301, partial [Nannochloropsis gaditana CCMP526] >gi|422294572|gb|EKU21872.1| hypothetical protein NGA_0219301, partial [Nannochloropsis gaditana CCMP526] >gi|422294981|gb|EKU22280.1| hypothetical protein NGA_0219302, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 273.478 bits (698), Expect = 3.569e-92 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD
Sbjct: 62 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 194
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|585110232|gb|EWM27896.1| (uncharacterized protein Naga_100197g8 [Nannochloropsis gaditana]) HSP 1 Score: 270.396 bits (690), Expect = 8.097e-92 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD
Sbjct: 1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|1214683579|gb|OWZ01399.1| (Transmembrane protein [Phytophthora megakarya]) HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-19 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0
Query: 31 NKFE-MDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
+KFE ++++AR P R P +T LAA + G+IL+ T +G+ E+ RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y IPSYDD
Sbjct: 23 SKFESFSKENAARAAAPDSDFRRKAFPIRTGLAAASLFALGSILIYVSTLIGL------DEERRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|953497921|emb|CEG40681.1| (upf0414 transmembrane protein c20orf30-like protein [Plasmopara halstedii]) HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-19 Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0
Query: 37 RQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
++ +AR P R P +T LAA + + G+IL+ T +G+ E++RGL+ +ILG + FIPGSYA++QL+GAW GW GY Y IPSYDD
Sbjct: 30 KEDAARAATPDLEIRRKAFPIRTGLAAACLFLLGSILIYVSTLIGL------DEEKRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYHYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|675169069|ref|XP_008893419.1| (hypothetical protein PPTG_01783 [Phytophthora parasitica INRA-310] >gi|567959401|gb|ETK84974.1| hypothetical protein L915_10109 [Phytophthora parasitica] >gi|568017335|gb|ETL91512.1| hypothetical protein L917_09944 [Phytophthora parasitica] >gi|568047756|gb|ETM44828.1| hypothetical protein L914_09987 [Phytophthora parasitica] >gi|568107016|gb|ETN21646.1| hypothetical protein PPTG_01783 [Phytophthora parasitica INRA-310] >gi|570325720|gb|ETO73668.1| hypothetical protein F444_10436 [Phytophthora parasitica P1976] >gi|570949555|gb|ETP14812.1| hypothetical protein F441_10274 [Phytophthora parasitica CJ01A1] >gi|570982990|gb|ETP42916.1| hypothetical protein F442_10247 [Phytophthora parasitica P10297] >gi|970633530|gb|KUF79156.1| Transmembrane protein [Phytophthora nicotianae]) HSP 1 Score: 87.0409 bits (214), Expect = 1.497e-19 Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 35 MDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
+ ++ +AR P R P +T LAA + G+IL+ T +G+ E++RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y IPSYDD
Sbjct: 28 LSKEDAARAAAPELDSRRKTFPVRTGLAAASLFTLGSILIYVSTLIGL------DEEKRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|566022089|gb|ETI45000.1| (hypothetical protein F443_10336 [Phytophthora parasitica P1569] >gi|567988117|gb|ETL38399.1| hypothetical protein L916_10016 [Phytophthora parasitica]) HSP 1 Score: 87.0409 bits (214), Expect = 1.616e-19 Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 35 MDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
+ ++ +AR P R P +T LAA + G+IL+ T +G+ E++RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y IPSYDD
Sbjct: 28 LSKEDAARAAAPELDSRRKTFPVRTGLAAASLFTLGSILIYVSTLIGL------DEEKRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|695433675|ref|XP_009531236.1| (hypothetical protein PHYSODRAFT_513985 [Phytophthora sojae] >gi|348673988|gb|EGZ13807.1| hypothetical protein PHYSODRAFT_513985 [Phytophthora sojae]) HSP 1 Score: 85.8853 bits (211), Expect = 4.991e-19 Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 0
Query: 37 RQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
++S+AR P R P +T LAA + G+IL+ T +G+ E+ RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y IPSYDD
Sbjct: 30 KESAARAAAPDLDFRRKTFPIRTGLAAASLFALGSILIYVSTLIGL------DEERRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|301108415|ref|XP_002903289.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097661|gb|EEY55713.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 84.7297 bits (208), Expect = 1.150e-18 Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 0
Query: 27 SPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
P F F ++ +AR P R P +T LAA + G+IL+ T +G+ KEK RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y IPSYDD
Sbjct: 22 DPKFASFS--KEDAARAAAPDLELRRKKFPIRTGLAAASLFALGSILIYVSTLIGL-----DKEK-RGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|301087985|ref|XP_002894744.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262094847|gb|EEY52899.1| transmembrane protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 83.9593 bits (206), Expect = 2.456e-18 Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 0
Query: 27 SPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTG--LGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
P F F ++ +AR P R P +T LAA + G+IL+ +G+ KEK RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y IPSYDD
Sbjct: 22 DPKFASFS--KEDAARAAAPDLELRRKKFPIRTGLAAASLFALGSILIYVSNLIGL-----DKEK-RGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|325184083|emb|CCA18542.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 74.3294 bits (181), Expect = 5.969e-15 Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 0
Query: 52 RGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
+G P +T LAA + G++L+ T +G+ EK RGL++++LG + FIPGSYA+FQL+G++ GW GY Y + SYDD
Sbjct: 8 KGAFPIRTGLAAAALFTIGSVLIYVSTLIGL------DEKRRGLSILMLGLIAFIPGSYATFQLYGSFRGWKGYQYDQVASYDD 85 The following BLAST results are available for this feature:
BLAST of EWM27896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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