|
|
Properties
| Property Name | Value |
|---|
| Product | uncharacterized protein |
| Orig transcript id | gnl|cribi|Naga_100197g8.5172.mrna |
| Orig protein id | gnl|cribi|Naga_100197g8.5172 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:1201481..1203252 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2784 ID=rna2784|Name=rna2784|organism=Nannochloropsis gaditana|type=mRNA|length=2067bp
TTGAAATTGTGCGAACTCGATTCCCGGCCTACTGGAAAGCAACAGCCAAT
TCCTGAACGACATTTCACCTTCCACCGCCTGCATTCTTATTTCCTTGCAC
AGGTCGACGATTTCCAGTGGCTCTGCTTTCCCTGGTGTGCGTGCACGCAT
TTTTTTATCGGCCATCCGCATTCCATTCCATACAACCTCCTCCCTTCCGA
AGGGACCACGTCTGCGCAACTGAGGCACCCCCCCAAAAAGAAATACGCCG
CCTTTAAGTCCTTTACACGCGCGCAATCCCCCCCTTCTATCTCCGCTACT
CTGTCTTGAGCAGCGTGGCCTCTCATCGACGTGGACTCGCCTTTTATAGA
AAGAATGGATGTGGCATTTCTTACCCCGGGATGGGCACCGTCATCCGATT
CAATCGTCTCTCCACTCCCACCCTCCTCCACCGCGTCCCCGCCCAGCTGC
AGTCTCACGCACAGGCTTCCACGCCTTCTTCGCCCCGGGGACACTGCAAG
GGCCCACCGTTTCGTCACGGCCTCCTCCCGGACCCAATATCATGGCCGAT
CTTGGTCTTCACCTTCGATCTTGTCATTTTCCGGTGTATCCGCCGCGGAC
TGTCCTTCCAGAAAATGCGGGGCAATGAAAAGTAACCTTCTCCATCGCTG
TGCAGTGCCCAACCAGAAAGAAGGGACAAGCAGCCCCCAGGAACATACCC
GGAACCAGCTGGAACCCGTCGATGCCTCCTCCCCCTCCTCCCCCTCCTCC
TCCTCCCCTTCCTCCCCTTCCTTCCCCTCCGACGCTTTTGCACCTTCTCC
AGCTTCGTTAAAGCCTGAAAGACAAGAGTGGGCAGTTCCGGACAGCCCCG
AACCTCCTTTCTCCGTTTCCCCCAGCGTTCCCACCCCATCCCGACTCGTC
AACAGCCCGTCCGCTTCCCCTCCCCTCCCCACCGAACCCGCTCCTTCCTT
CCTCATCACCCCTGCCCTCGCCTACCTCCTCCTGAATGTGGTCACCCTCC
TATGGGGAAGCCAGCACGCGGTGATCAAAAGTGCCCTGGCGTCCTCCCCC
GACTATCCTGGTGTCTTCAATCTCCTCCGCTTCGGGCTGGCCTCCCTCTG
TTTCTGGCCGTGGACGCCATCTTTCCTCCCTCCCTCCCTCGGCACCTGCT
CGGAGAATGGGGAAGAGGGCGTGGACGCGGCGGAGAAGGAACGCCAGGGC
CTGTGGCGGGCGGGCGCCGAGCTTGGGATCTGGATGTTTCTGGGCTTTTC
CTTACAGGCCGTCGGTTTGCAACTCACGTCCGCGTCTAGGAGTGGCTTCC
TCCTCTACCTGAACGTGAAGCTGGTTCCCCTCTTCGCCTGGCTGCTGCTG
GGTCGACGCCCGAGTTTGGACGTGGTCGTTTTTGCTCTGCTGGCGTTTGC
GGGCACGGCGCTCCTGTCCGTCGACGGGGGAAGGATGCCGAACGTTGGGG
ATGCGTGGTCCCTGGCAGCTGCAGCCGCCTCGGCTATGTTCATTTTACGA
CTGGAGGGAGCGGCGAAAGCCTACTCGTTGACCCGGGCCAAGGAATTGAA
CAGCGCAACCTTGTGGGTGACGACGGGCTTGTGTGCGGTATGGGCTGGTC
TGGAGGCCTTAATGGGATACGGGGGAGAAGGAGGGGACGGGGGGGGGCTG
GGGGTGGTGTTTACCGATTTATTGCGGGACGAGTGGCCTCAGATTGTGTT
TTTAGGGGTGGTGGCGTCCGCGCTCTGCAACTGGATACAGACATTGGGGC
AACGGGAAGTGCCTGCGGAGAAAGCTGCGCTCATCTACGCGCTGGACCCC
GTGTACGGCGCTGTGTTTGCCCGTCTGTTGTTGGGGGAGAGCGAGGCATT
GGGTACGATGGGGTATACAGGGGCGGCCCTCGTCACTAGTGCGGCAGTTT
TGGCTACATTTTATGGGAAACGTGGAGTGGAAGGTAGTGCGCACGATGAA
AGCGGGATGAATGGTATAGAATTGTCTGCCAAGAAGCATGAGGACGTAGA
AGACCAGAAAGAGAAGGGGGAAGTACCGCAATCAAGACAGAAGTAAAGAT
ATTGTCACGACTACTGC back to topprotein sequence of rna2784 >rna2784-protein ID=rna2784-protein|Name=rna2784|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRP
GRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGS
LLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD back to topmRNA from alignment at CM002459.1:1201481..1203252+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2784 ID=rna2784|Name=rna2784|organism=Nannochloropsis gaditana|type=mRNA|length=1772bp|location=Sequence derived from alignment at CM002459.1:1201481..1203252+ (Nannochloropsis gaditana)
GGAATCGAGTTCGCACAATTTCAattcttccttcttgttgATCTTGAAGG
AATTCTGCCTTCACAACAATAACTCATGTCGTCCGCAGTCCCTTTTTAGC
CCTCTTTTTGTTTACACTTCCCTATCGGAAAGCTCTGCTTTGTGCATCTA
TGGTTTTGATGGTCTTTTTGCGTCGACTCGCTACATGAACAGACGAGAGG
TCACGTCCTCGGTAACCTTCCAAGAAGGTGGAAGATAAAATGCCCCCAAA
AACAGTCCAAGGAATGGTAAAAGCTATCTAAAAGTTGATGAACATATAAA
CACCCCACATTCATTGGATTGGTGGAATTAAAGGCTGTGATCATCATGAA
TGCGCTTGTGCTATCAATCTTTCCCCAAGCACGTTACCATTGCTACCTCA
TGTCCCGTCCTTTAGCGTCACAATCTTTCCCAAATATCCAACACAGGGAC
GGCGTCAGTCATCGACAAAACCTCTCCGTCCGGGGAGACTGCTCagccct
cctcacctccacctccgcttcctcAGTCGCCTGATCAAAAGGCCCCGCAG
TTAGAAGAAGGTCAAAGGCTGGACTCGGGCACTCTCAATCTCACCAGCAT
GTACTCCTCGTCAACCCCATCGgtgcctccaccatcctccaccccccacc
CGTCGCAACAAGGACCACAAGgattctcccctcttttcaaTAAATTCGAA
ATGGACAGGCAAAGTTCTGCAAGGACTGTCAATCCTCGACGCAGGCCAGG
ACGtgggcctccgcctcccaaGACCACCCTGGCGGCTGTGCTTATGCTGG
TGACAGGCACGATATTATTGTGCACGGGACTAGGGATCCGGTGGCATACC
GAcccgaaggaaaaggagcgaggTCTGGCCATGATCATCTTGGGGAGCTT
GCGTAagtggcggggcggggaatAGAGAGAGGGGCACAGGGAGAAATCTG
ATAGTATAGGGCTCGCGGGTTGTGCCATGCATATTGGAAAGGTCTTTTGG
GGGCATGATGACgggcggaaatggaggaatAAGAGGACAGGGCTGACGGT
GGGGTTTGCGTTCCAGAGTATCAAGGCTTCTCTATGTGCGCCCTGCTCCG
ATTTAGGAGCAAGTCCATGCCTTCTGACTCTTCTTTCAGCATCTTTCTGA
AGTTACTCTTTTATCTTCCCCACTACAGTCTTTATTCCGGGTAGCTACGC
ATCATTTCAATTGTTTGGAGCGTGGGCGGGCTGGCCCGGGTATTCATACG
CATATATTCCTTCTTATGACGACTGAGGGGAGCGATTTGTAGGGAACAAA
GCAGGTGCAAAGGATAAGCAGATGAGTCGGTGGAATTTAAACGAAAGGCT
TgcacgaaaaagaaaatgatgATTGTGGGATACTCGTCGAACGGGCTGCC
GGTAAACCGGCTTCCGTTTTACGCTCGAAGTTATCGAAGGTCTAATTCGG
CATCGGATCCAGGATTTAACAAGAGAAGATGATGGAGGTGATTTGAAAAC
AAAGAGATTAAGAGGGTAAATGACTGGATGGTATGAAAAAGAGACTTTGT
GTCAAAGGGTCAAGAGGAGAGGTGGTGTTTCGACGCCCTCGCGGGGACTT
ACGGCAGAAGAATTGCGCTGTTATATGGTATGTTTTTAATGACTGGGGTT
TTAACATTGTTTCAAGGCTGGGTGTCTTCTTCCAATCACCATATAACTTA
TTGCCTTGATATTGCTTTGTACGTCTGAGTGGACcatccatcgcctcctc
ttcttctgtcGCGTGCCATGCT back to topCoding sequence (CDS) from alignment at CM002459.1:1201481..1203252+ >rna2784 ID=rna2784|Name=rna2784|organism=Nannochloropsis gaditana|type=CDS|length=804bp|location=Sequence derived from alignment at CM002459.1:1201481..1203252+ (Nannochloropsis gaditana)
ATGTACTCCTCGTCAACCCCATCGgtgcctccaccatcctccacccccca
ccCGTCGCAACAAGGACCACAAGgattctcccctcttttcaaTAAATTCG
AAATGGACAGGCAAAGTTCTGCAAGGACTGTCAATCCTCGACGCAGGCCA
GGACGtgggcctccgcctcccaaGACCACCCTGGCGGCTGTGCTTATGCT
GGTGACAGGCACGATATTATTGTGCACGGGACTAGGGATCCGGTGGCATA
CCGAcccgaaggaaaaggagcgaggTCTGGCCATGATCATCTTGGGGAGC
TTGCTCTTTATTCCGGGTAGCTACGCATCATTTCAATTGTTTGGAGCGTG
GGCGGGCTGGCCCGGGTATTCATACGCATATATTCCTTCTTATGACGACT
GAATGTACTCCTCGTCAACCCCATCGgtgcctccaccatcctccaccccc
caccCGTCGCAACAAGGACCACAAGgattctcccctcttttcaaTAAATT
CGAAATGGACAGGCAAAGTTCTGCAAGGACTGTCAATCCTCGACGCAGGC
CAGGACGtgggcctccgcctcccaaGACCACCCTGGCGGCTGTGCTTATG
CTGGTGACAGGCACGATATTATTGTGCACGGGACTAGGGATCCGGTGGCA
TACCGAcccgaaggaaaaggagcgaggTCTGGCCATGATCATCTTGGGGA
GCTTGCTCTTTATTCCGGGTAGCTACGCATCATTTCAATTGTTTGGAGCG
TGGGCGGGCTGGCCCGGGTATTCATACGCATATATTCCTTCTTATGACGA
CTGA back to top
|