EWM27896.1, cds2776 (CDS) Nannochloropsis gaditana

Overview
NameEWM27896.1
Unique Namecds2776
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1202079..1202382 +
Alignment locationCM002459.1:1202659..1202756 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27896.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100197g8.5172.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1202079..1202382 +
CM002459.1supercontigCM002459.1:1202659..1202756 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008590DUF872_TM
Homology
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|553184376|ref|XP_005854076.1| (hypothetical protein NGA_0219302, partial [Nannochloropsis gaditana CCMP526] >gi|553186762|ref|XP_005854484.1| hypothetical protein NGA_0219301, partial [Nannochloropsis gaditana CCMP526] >gi|422294572|gb|EKU21872.1| hypothetical protein NGA_0219301, partial [Nannochloropsis gaditana CCMP526] >gi|422294981|gb|EKU22280.1| hypothetical protein NGA_0219302, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.478 bits (698), Expect = 3.569e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD
Sbjct:   62 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 194          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|585110232|gb|EWM27896.1| (uncharacterized protein Naga_100197g8 [Nannochloropsis gaditana])

HSP 1 Score: 270.396 bits (690), Expect = 8.097e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD
Sbjct:    1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|1214683579|gb|OWZ01399.1| (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-19
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   31 NKFE-MDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            +KFE   ++++AR   P     R   P +T LAA  +   G+IL+   T +G+       E+ RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y  IPSYDD
Sbjct:   23 SKFESFSKENAARAAAPDSDFRRKAFPIRTGLAAASLFALGSILIYVSTLIGL------DEERRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|953497921|emb|CEG40681.1| (upf0414 transmembrane protein c20orf30-like protein [Plasmopara halstedii])

HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-19
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0
Query:   37 RQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            ++ +AR   P     R   P +T LAA  + + G+IL+   T +G+       E++RGL+ +ILG + FIPGSYA++QL+GAW GW GY Y  IPSYDD
Sbjct:   30 KEDAARAATPDLEIRRKAFPIRTGLAAACLFLLGSILIYVSTLIGL------DEEKRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYHYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|675169069|ref|XP_008893419.1| (hypothetical protein PPTG_01783 [Phytophthora parasitica INRA-310] >gi|567959401|gb|ETK84974.1| hypothetical protein L915_10109 [Phytophthora parasitica] >gi|568017335|gb|ETL91512.1| hypothetical protein L917_09944 [Phytophthora parasitica] >gi|568047756|gb|ETM44828.1| hypothetical protein L914_09987 [Phytophthora parasitica] >gi|568107016|gb|ETN21646.1| hypothetical protein PPTG_01783 [Phytophthora parasitica INRA-310] >gi|570325720|gb|ETO73668.1| hypothetical protein F444_10436 [Phytophthora parasitica P1976] >gi|570949555|gb|ETP14812.1| hypothetical protein F441_10274 [Phytophthora parasitica CJ01A1] >gi|570982990|gb|ETP42916.1| hypothetical protein F442_10247 [Phytophthora parasitica P10297] >gi|970633530|gb|KUF79156.1| Transmembrane protein [Phytophthora nicotianae])

HSP 1 Score: 87.0409 bits (214), Expect = 1.497e-19
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   35 MDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            + ++ +AR   P     R   P +T LAA  +   G+IL+   T +G+       E++RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y  IPSYDD
Sbjct:   28 LSKEDAARAAAPELDSRRKTFPVRTGLAAASLFTLGSILIYVSTLIGL------DEEKRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|566022089|gb|ETI45000.1| (hypothetical protein F443_10336 [Phytophthora parasitica P1569] >gi|567988117|gb|ETL38399.1| hypothetical protein L916_10016 [Phytophthora parasitica])

HSP 1 Score: 87.0409 bits (214), Expect = 1.616e-19
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   35 MDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            + ++ +AR   P     R   P +T LAA  +   G+IL+   T +G+       E++RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y  IPSYDD
Sbjct:   28 LSKEDAARAAAPELDSRRKTFPVRTGLAAASLFTLGSILIYVSTLIGL------DEEKRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|695433675|ref|XP_009531236.1| (hypothetical protein PHYSODRAFT_513985 [Phytophthora sojae] >gi|348673988|gb|EGZ13807.1| hypothetical protein PHYSODRAFT_513985 [Phytophthora sojae])

HSP 1 Score: 85.8853 bits (211), Expect = 4.991e-19
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 0
Query:   37 RQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            ++S+AR   P     R   P +T LAA  +   G+IL+   T +G+       E+ RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y  IPSYDD
Sbjct:   30 KESAARAAAPDLDFRRKTFPIRTGLAAASLFALGSILIYVSTLIGL------DEERRGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|301108415|ref|XP_002903289.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097661|gb|EEY55713.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 84.7297 bits (208), Expect = 1.150e-18
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 0
Query:   27 SPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
             P F  F   ++ +AR   P     R   P +T LAA  +   G+IL+   T +G+      KEK RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y  IPSYDD
Sbjct:   22 DPKFASFS--KEDAARAAAPDLELRRKKFPIRTGLAAASLFALGSILIYVSTLIGL-----DKEK-RGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|301087985|ref|XP_002894744.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262094847|gb|EEY52899.1| transmembrane protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 83.9593 bits (206), Expect = 2.456e-18
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 0
Query:   27 SPLFNKFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTG--LGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
             P F  F   ++ +AR   P     R   P +T LAA  +   G+IL+     +G+      KEK RGL+ +ILG + FIPGSYA++QL+GAW GW GY+Y  IPSYDD
Sbjct:   22 DPKFASFS--KEDAARAAAPDLELRRKKFPIRTGLAAASLFALGSILIYVSNLIGL-----DKEK-RGLSFLILGLIAFIPGSYATYQLYGAWKGWKGYNYDQIPSYDD 122          
BLAST of EWM27896.1 vs. NCBI_GenBank
Match: gi|325184083|emb|CCA18542.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 74.3294 bits (181), Expect = 5.969e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   52 RGPPPPKTTLAAVLMLVTGTILL--CTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
            +G  P +T LAA  +   G++L+   T +G+       EK RGL++++LG + FIPGSYA+FQL+G++ GW GY Y  + SYDD
Sbjct:    8 KGAFPIRTGLAAAALFTIGSVLIYVSTLIGL------DEKRRGLSILMLGLIAFIPGSYATFQLYGSFRGWKGYQYDQVASYDD 85          
The following BLAST results are available for this feature:
BLAST of EWM27896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553184376|ref|XP_005854076.1|3.569e-92100.00hypothetical protein NGA_0219302, partial [Nannoch... [more]
gi|585110232|gb|EWM27896.1|8.097e-92100.00uncharacterized protein Naga_100197g8 [Nannochloro... [more]
gi|1214683579|gb|OWZ01399.1|1.129e-1944.34Transmembrane protein [Phytophthora megakarya][more]
gi|953497921|emb|CEG40681.1|1.449e-1944.44upf0414 transmembrane protein c20orf30-like protei... [more]
gi|675169069|ref|XP_008893419.1|1.497e-1943.56hypothetical protein PPTG_01783 [Phytophthora para... [more]
gi|566022089|gb|ETI45000.1|1.616e-1943.56hypothetical protein F443_10336 [Phytophthora para... [more]
gi|695433675|ref|XP_009531236.1|4.991e-1945.45hypothetical protein PHYSODRAFT_513985 [Phytophtho... [more]
gi|301108415|ref|XP_002903289.1|1.150e-1844.95conserved hypothetical protein [Phytophthora infes... [more]
gi|301087985|ref|XP_002894744.1|2.456e-1844.04transmembrane protein, putative [Phytophthora infe... [more]
gi|325184083|emb|CCA18542.1|5.969e-1544.05conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2784rna2784Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications