rna2774, rna2774 (mRNA) Nannochloropsis gaditana

Overview
Namerna2774
Unique Namerna2774
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length988
Alignment locationCM002459.1:1170105..1170954 +

Link to JBrowse

Properties
Property NameValue
Productchloride channel 7
Orig transcript idgnl|cribi|Naga_100338g1.10101.mrna
Orig protein idgnl|cribi|Naga_100338g1.10101
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1170105..1170954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100338g1gene2655Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2774rna2774-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27906.1cds2766Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2774 ID=rna2774|Name=rna2774|organism=Nannochloropsis gaditana|type=mRNA|length=988bp
CACCACAGGGCGGACTATGGATGACGGGGACCCGCTCTCGCATCCTGCCA
TTCAGCTGCAAGTGTCTCCCCCCCCGTCTGCCGCTAAGGGGAGAAGCAGC
AGCAACAGCAGCAACAGTAGCAGTGGCAGTGGCAGTAGTTTCAGCAGCCA
TGCCAGCACAGTCAGCGTTTGGCGACGTCAACAACAACAACAACCGAGAC
AGCAGCAGCAGCAGCAGCAGCGTGTGACACCGTCTCCTGAGTCGGGTCTC
GGGGCGGTGGATCGAACAGTGGGGGGCGGAGAAGCAGATACGACAACAGC
CCCCACGGCGATCAAGACACAGCACAGTAGCGATGGCGGACAGGAAACAG
AGGCGGAGGAGGCACCCTTCTTAGCCAACGGGTCGACTTCAACGGCCAGA
AAGAAACGCACGCCGCGGGGTCCACCCTTCCAGGTCCAGCACCAAGAGCC
CCTCCTCCTTCCCCACCTAGACACAACGCAAGGCGCCGCCGGCGCTGCCT
TCCAGCAAGAGATGGGGAAGCTGAGCAAATACATTGATCCAGACCGGCAT
GTGGAGCGGGGTCCCTACCACGGGAAATCGTACCCAGACTCCTTGACGTA
CGAGCCGGAGGACAGCGAGGTGTGGCGCACGCATGAGCTACAAAGGGTCC
ATAGAGAGCAGAGTCAATTCTGGACGACGGGCAAAAAACGCGCGGTCAAG
CGCTGGCTCCTTACGGCACTGACCGGCGTCCTGATTGGCCTCCTCGGTGT
GGCGATGACGTACACCACGCAACGGCTCGTCCGTTTCAAGCTCGGAACCG
TTACACGCCTCTTGCAGGAGGAAGTGGCCGGGACCCGTCTTCCCGGCGCC
TCCTTCTTCTCCTACCTCGGTCTGAACCTCCTGTACGTCCTCATCGCCAA
TGCTGCGGTCTGGGCGGAACCTGTTGCGGCCGGGAGCGGCATTCCCGAGA
TCAAAGCCTTCCTGAACGGCGTCAGCCTCCCGAGGTAA
back to top

protein sequence of rna2774

>rna2774-protein ID=rna2774-protein|Name=rna2774|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPD
NLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREE
IRGAGVEEGDEEEEVEDGGTMIRVL
back to top

mRNA from alignment at CM002459.1:1170105..1170954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2774 ID=rna2774|Name=rna2774|organism=Nannochloropsis gaditana|type=mRNA|length=850bp|location=Sequence derived from alignment at CM002459.1:1170105..1170954+ (Nannochloropsis gaditana)
tcccaggaCCGGCAATGTGTGATCGATTTGCGGCCCGTCATGAACACTGC
GCCCTACTGCATCAATGAGACTGCCTCCCTGGTGAGGACCTACCGACTCT
TCCGCACCATGGGGCTACGACACCTCTGTGTCGTCAATAGTCACAACCAG
GTACCCCTGGGAGACCCTAGAGACTGACGGGCGGGTCCCATTATTCGCGT
GCATTGGCCAGCCCCTTTTGTGTTATACATGGTGCACTTGTATTTTAGTG
TCTCTTTTTGTCAGAAACACTACTCAGATTtactttgggggggggagaga
cgaAACACCCCTCTACGAGCTCATGCTTTAGAAGACATATCCCTCTTCAA
TCTTCATCCCGCCACCTGaattctccttttcttttcattAATCATCTCTC
CTTAATTGCAGGTTACCGGAATCATCACCCGTTACGACCTGCTGCCTGAC
AACCTTCATATCAAGTATGAACATCTTTCGAAAGCTGCTACTGCAGGGGA
ACGCTCTTACTATACGCGTGATCGCCGCGCGTCAGCCTTCACCGTCAAGC
CACCTAGCAATCGTAGTCAATGGAGAGAAGATTGGGCTGCGAGGGAAGAG
ATCAGAGGTGctggagtggaggaaggggatgaggaggaggaagttgaaGA
CGGGGGAACCATGATACGCGTGTTGTAAGAAAGATGCATCACTCGGTATC
TTTTTGACAGTATCCTTGATCAAATACAACGATTTATGGGAAATATAGAA
ATCAATGGAGAGTATTGTAGAAAAAAACACTCTGAAATGCCTTCAGTGGA
GGCGCGACCGTCTAGACTCTAACCCTAAAGCAGTAATTTGTCTGTGACAA
back to top

Coding sequence (CDS) from alignment at CM002459.1:1170105..1170954+

>rna2774 ID=rna2774|Name=rna2774|organism=Nannochloropsis gaditana|type=CDS|length=756bp|location=Sequence derived from alignment at CM002459.1:1170105..1170954+ (Nannochloropsis gaditana)
ATGAACACTGCGCCCTACTGCATCAATGAGACTGCCTCCCTGGTGAGGAC
CTACCGACTCTTCCGCACCATGGGGCTACGACACCTCTGTGTCGTCAATA
GTCACAACCAGGTTACCGGAATCATCACCCGTTACGACCTGCTGCCTGAC
AACCTTCATATCAAGTATGAACATCTTTCGAAAGCTGCTACTGCAGGGGA
ACGCTCTTACTATACGCGTGATCGCCGCGCGTCAGCCTTCACCGTCAAGC
CACCTAGCAATCGTAGTCAATGGAGAGAAGATTGGGCTGCGAGGGAAGAG
ATCAGAGGTGctggagtggaggaaggggatgaggaggaggaagttgaaGA
CGGGGGAACCATGATACGCGTGTTGTAAATGAACACTGCGCCCTACTGCA
TCAATGAGACTGCCTCCCTGGTGAGGACCTACCGACTCTTCCGCACCATG
GGGCTACGACACCTCTGTGTCGTCAATAGTCACAACCAGGTTACCGGAAT
CATCACCCGTTACGACCTGCTGCCTGACAACCTTCATATCAAGTATGAAC
ATCTTTCGAAAGCTGCTACTGCAGGGGAACGCTCTTACTATACGCGTGAT
CGCCGCGCGTCAGCCTTCACCGTCAAGCCACCTAGCAATCGTAGTCAATG
GAGAGAAGATTGGGCTGCGAGGGAAGAGATCAGAGGTGctggagtggagg
aaggggatgaggaggaggaagttgaaGACGGGGGAACCATGATACGCGTG
TTGTAA
back to top
Synonyms
Publications