EWM27906.1, cds2766 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|585110244|gb|EWM27906.1| (chloride channel 7 [Nannochloropsis gaditana]) HSP 1 Score: 261.536 bits (667), Expect = 1.314e-88 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREEIRGAGVEEGDEEEEVEDGGTMIRVL 125
MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREEIRGAGVEEGDEEEEVEDGGTMIRVL
Sbjct: 1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREEIRGAGVEEGDEEEEVEDGGTMIRVL 125
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|219125424|ref|XP_002182982.1| (channel voltage activated chloride channel [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405776|gb|EEC45718.1| channel voltage activated chloride channel, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 87.0409 bits (214), Expect = 1.799e-17 Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
NTAPY +NETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP+ L
Sbjct: 621 NTAPYTVNETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPEAL 671
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|1210527566|dbj|GAX13691.1| (chloride channel 7 [Fistulifera solaris]) HSP 1 Score: 86.2705 bits (212), Expect = 3.226e-17 Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0
Query: 2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP L
Sbjct: 795 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPRAL 845
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|1072238145|gb|OEU22872.1| (voltage activated chloride channel CLC7 type [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 85.8853 bits (211), Expect = 4.861e-17 Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0
Query: 2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP++L
Sbjct: 726 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPESL 776
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|1210530449|dbj|GAX11033.1| (chloride channel 7 [Fistulifera solaris]) HSP 1 Score: 83.9593 bits (206), Expect = 2.037e-16 Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0
Query: 2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP L
Sbjct: 793 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPRAL 843
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|224013975|ref|XP_002296651.1| (chloride channel protein 7, partial [Thalassiosira pseudonana CCMP1335] >gi|220968701|gb|EED87046.1| chloride channel protein 7, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 81.6481 bits (200), Expect = 1.440e-15 Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0
Query: 2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDL 47
NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DL
Sbjct: 636 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRVDL 681
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|698821495|ref|XP_009843776.1| (hypothetical protein H257_16880 [Aphanomyces astaci] >gi|574101233|gb|ETV66800.1| hypothetical protein H257_16880 [Aphanomyces astaci]) HSP 1 Score: 78.1814 bits (191), Expect = 2.607e-14 Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 0
Query: 1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTR 73
MN P+ I + + R +RLFR++GLRHL V+N HNQV GI++R DL P++L +HLS++ + Y+TR
Sbjct: 787 MNPTPHTIQDQTPVPRAFRLFRSLGLRHLVVLNRHNQVKGIVSRKDLTPEHLKASLDHLSESEKLVIQGYFTR 859
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|695443439|ref|XP_009533702.1| (hypothetical protein PHYSODRAFT_520430 [Phytophthora sojae] >gi|348671136|gb|EGZ10957.1| hypothetical protein PHYSODRAFT_520430 [Phytophthora sojae]) HSP 1 Score: 74.3294 bits (181), Expect = 5.630e-13 Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRAS 78
MN P+ + E + R +RLFR++GLRHL V+N N+V G+ITR DL P +L E LS+ + Y+ RDR S
Sbjct: 873 MNPTPHTVQEQTPVPRAFRLFRSLGLRHLIVLNRRNEVRGVITRKDLTPAHLKFCLESLSETEKQRIQGYFHRDRSGS 950
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|301107468|ref|XP_002902816.1| (Chloride Channel (ClC) Family [Phytophthora infestans T30-4] >gi|262097934|gb|EEY55986.1| Chloride Channel (ClC) Family [Phytophthora infestans T30-4]) HSP 1 Score: 73.9442 bits (180), Expect = 6.764e-13 Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRAS 78
MN P+ + E + R +RLFR++GLRHL V+N N+V G+ITR DL P +L E LS+ + Y+ RDR S
Sbjct: 863 MNPTPHTVQEQTPVPRAFRLFRSLGLRHLIVLNRRNEVRGVITRKDLTPAHLKFCLESLSETEKQRIQGYFHRDRSGS 940
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|970662193|gb|KUF99602.1| (hypothetical protein AM588_10009871 [Phytophthora nicotianae]) HSP 1 Score: 73.9442 bits (180), Expect = 7.976e-13 Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRAS 78
MN P+ + E + R +RLFR++GLRHL V+N N+V G+ITR DL P +L E LS+ + Y+ RDR S
Sbjct: 863 MNPTPHTVQEQTPVPRAFRLFRSLGLRHLIVLNRRNEVRGVITRKDLTPAHLKFCLESLSETEKQRIQGYFHRDRAGS 940 The following BLAST results are available for this feature:
BLAST of EWM27906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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