EWM27906.1, cds2766 (CDS) Nannochloropsis gaditana

Overview
NameEWM27906.1
Unique Namecds2766
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1170144..1170254 +
Alignment locationCM002459.1:1170516..1170782 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27906.1
Productchloride channel 7
Orig transcript idgnl|cribi|Naga_100338g1.10101.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1170144..1170254 +
CM002459.1supercontigCM002459.1:1170516..1170782 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
Homology
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|585110244|gb|EWM27906.1| (chloride channel 7 [Nannochloropsis gaditana])

HSP 1 Score: 261.536 bits (667), Expect = 1.314e-88
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREEIRGAGVEEGDEEEEVEDGGTMIRVL 125
            MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREEIRGAGVEEGDEEEEVEDGGTMIRVL
Sbjct:    1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRASAFTVKPPSNRSQWREDWAAREEIRGAGVEEGDEEEEVEDGGTMIRVL 125          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|219125424|ref|XP_002182982.1| (channel voltage activated chloride channel [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405776|gb|EEC45718.1| channel voltage activated chloride channel, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.0409 bits (214), Expect = 1.799e-17
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
            NTAPY +NETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP+ L
Sbjct:  621 NTAPYTVNETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPEAL 671          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|1210527566|dbj|GAX13691.1| (chloride channel 7 [Fistulifera solaris])

HSP 1 Score: 86.2705 bits (212), Expect = 3.226e-17
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
            NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP  L
Sbjct:  795 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPRAL 845          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|1072238145|gb|OEU22872.1| (voltage activated chloride channel CLC7 type [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.8853 bits (211), Expect = 4.861e-17
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
            NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP++L
Sbjct:  726 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPESL 776          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|1210530449|dbj|GAX11033.1| (chloride channel 7 [Fistulifera solaris])

HSP 1 Score: 83.9593 bits (206), Expect = 2.037e-16
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
            NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DLLP  L
Sbjct:  793 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPRAL 843          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|224013975|ref|XP_002296651.1| (chloride channel protein 7, partial [Thalassiosira pseudonana CCMP1335] >gi|220968701|gb|EED87046.1| chloride channel protein 7, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 81.6481 bits (200), Expect = 1.440e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0
Query:    2 NTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDL 47
            NTAPY INETAS+ RTYRLFRT+GLR LCVVN +NQV GIITR DL
Sbjct:  636 NTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRVDL 681          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|698821495|ref|XP_009843776.1| (hypothetical protein H257_16880 [Aphanomyces astaci] >gi|574101233|gb|ETV66800.1| hypothetical protein H257_16880 [Aphanomyces astaci])

HSP 1 Score: 78.1814 bits (191), Expect = 2.607e-14
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 0
Query:    1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTR 73
            MN  P+ I +   + R +RLFR++GLRHL V+N HNQV GI++R DL P++L    +HLS++     + Y+TR
Sbjct:  787 MNPTPHTIQDQTPVPRAFRLFRSLGLRHLVVLNRHNQVKGIVSRKDLTPEHLKASLDHLSESEKLVIQGYFTR 859          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|695443439|ref|XP_009533702.1| (hypothetical protein PHYSODRAFT_520430 [Phytophthora sojae] >gi|348671136|gb|EGZ10957.1| hypothetical protein PHYSODRAFT_520430 [Phytophthora sojae])

HSP 1 Score: 74.3294 bits (181), Expect = 5.630e-13
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRAS 78
            MN  P+ + E   + R +RLFR++GLRHL V+N  N+V G+ITR DL P +L    E LS+      + Y+ RDR  S
Sbjct:  873 MNPTPHTVQEQTPVPRAFRLFRSLGLRHLIVLNRRNEVRGVITRKDLTPAHLKFCLESLSETEKQRIQGYFHRDRSGS 950          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|301107468|ref|XP_002902816.1| (Chloride Channel (ClC) Family [Phytophthora infestans T30-4] >gi|262097934|gb|EEY55986.1| Chloride Channel (ClC) Family [Phytophthora infestans T30-4])

HSP 1 Score: 73.9442 bits (180), Expect = 6.764e-13
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRAS 78
            MN  P+ + E   + R +RLFR++GLRHL V+N  N+V G+ITR DL P +L    E LS+      + Y+ RDR  S
Sbjct:  863 MNPTPHTVQEQTPVPRAFRLFRSLGLRHLIVLNRRNEVRGVITRKDLTPAHLKFCLESLSETEKQRIQGYFHRDRSGS 940          
BLAST of EWM27906.1 vs. NCBI_GenBank
Match: gi|970662193|gb|KUF99602.1| (hypothetical protein AM588_10009871 [Phytophthora nicotianae])

HSP 1 Score: 73.9442 bits (180), Expect = 7.976e-13
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    1 MNTAPYCINETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNLHIKYEHLSKAATAGERSYYTRDRRAS 78
            MN  P+ + E   + R +RLFR++GLRHL V+N  N+V G+ITR DL P +L    E LS+      + Y+ RDR  S
Sbjct:  863 MNPTPHTVQEQTPVPRAFRLFRSLGLRHLIVLNRRNEVRGVITRKDLTPAHLKFCLESLSETEKQRIQGYFHRDRAGS 940          
The following BLAST results are available for this feature:
BLAST of EWM27906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110244|gb|EWM27906.1|1.314e-88100.00chloride channel 7 [Nannochloropsis gaditana][more]
gi|219125424|ref|XP_002182982.1|1.799e-1776.47channel voltage activated chloride channel [Phaeod... [more]
gi|1210527566|dbj|GAX13691.1|3.226e-1778.43chloride channel 7 [Fistulifera solaris][more]
gi|1072238145|gb|OEU22872.1|4.861e-1778.43voltage activated chloride channel CLC7 type [Frag... [more]
gi|1210530449|dbj|GAX11033.1|2.037e-1678.43chloride channel 7 [Fistulifera solaris][more]
gi|224013975|ref|XP_002296651.1|1.440e-1580.43chloride channel protein 7, partial [Thalassiosira... [more]
gi|698821495|ref|XP_009843776.1|2.607e-1445.21hypothetical protein H257_16880 [Aphanomyces astac... [more]
gi|695443439|ref|XP_009533702.1|5.630e-1343.59hypothetical protein PHYSODRAFT_520430 [Phytophtho... [more]
gi|301107468|ref|XP_002902816.1|6.764e-1343.59Chloride Channel (ClC) Family [Phytophthora infest... [more]
gi|970662193|gb|KUF99602.1|7.976e-1343.59hypothetical protein AM588_10009871 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2774rna2774Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications