rna2757, rna2757 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2757
Unique Name	rna2757
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	643
Alignment location	CM002459.1:1131454..1133536 -

Link to JBrowse

Properties


Property Name	Value
Product	qa- syp4 tlg2p syntaxin 16-type
Orig transcript id	gnl\|cribi\|Naga_100285g2.3543.mrna
Orig protein id	gnl\|cribi\|Naga_100285g2.3543
Gene	SNR4
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1131454..1133536 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SNR4	gene2638	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2757	rna2757-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27922.1	cds2749	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1131454..1133536-
coding sequence from alignment at CM002459.1:1131454..1133536-

mRNA sequence

>rna2757 ID=rna2757|Name=rna2757|organism=Nannochloropsis gaditana|type=mRNA|length=643bp
CCTCCTCTCTCCCTCCCTCCCTCCCTCCCTCATCCAGCCCGGGCCAAGGC
CTTCCTGGACGAAGGCCGGAGTGTGGTCGTCGACAACACGAACATCGAAG
CTTGGGAGCCCCGGGAATACGTGCGGCATGCCATCCATCTAGGGGTTAAA
GTGGAATTCGTGCGCGCTGAAGGTCGGTATGGCAACCTGCACGGGGTGCC
GGCCGAGAAGGTGGAAATGATGCGGGCGCGCCTGGAGAGGCTGACCATGG
ACAGCGTCTTGAACGCCTTGGCGCCCGCGGAGAGGCGAGAGATTGAACAG
GAGAGGGGGAAGGAGGTGTTGCGCGACGCAGGGCGGATCTCGGTGCGGCA
GGGGCAATGGATTTCTTTTGGTGGGGGAGGAGGAAGAGAGAGGGGAGGAG
GGGGAGGGAGGGACGAGACAAGTCAAGAGGAGGCGTTGGAACGGGCATTG
GCTTTGCTGAAATTTGGGAAGTGACGTACGGATAGGGGGAGTAGAGAAGA
AAAGAAGCTGAGGAGGAAAACAGACTCCCTTGACCACGCATGCGTGTGCG
TCAGGCAACCGCATCGTGTTCGCCTCCCAGACAAACGCCTGAACCAGAAA
GCAAATCAAGCATGGTAACTCCCAGGTTTCTTCGTGTGAGCAG

protein sequence of rna2757

>rna2757-protein ID=rna2757-protein|Name=rna2757|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MPQKARPTHRSNDSALSNSMNGRGRAHLLGDPKDLEKGGTDWQAARSQLP
PLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILA
LTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSH
AFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFR
QAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLD
RIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQ
VIKHAPRKR

mRNA from alignment at CM002459.1:1131454..1133536-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2757 ID=rna2757|Name=rna2757|organism=Nannochloropsis gaditana|type=mRNA|length=2083bp|location=Sequence derived from alignment at CM002459.1:1131454..1133536- (Nannochloropsis gaditana)
AACAGGAGCTATGGCGACACGGGATGTGACGAAACGATTTGTGGAGCTAC
GGGTCGAAATAAAGGTATTTTGGGCGTGAATTGCCTAATCTGTTGGTTTC
GTTCTAGCATGGGAAAAACCCTCCCTATTCCCGGTCTTTTCACATGCTTT
TCACGTACCTTCCACATGACTCCTCCACGTGCATCAAGTTCTACGCACAT
GTCCACATTTTGCACCCCTACATCATGCGCTCTCATCATTCGGAGATTCT
GCACGGCATCTGGCGTGGGTGCGGTTGTGTCACGTTTTTTTGATTCCTCC
ATCGTGCTTCCAAGGCCCTATCCTCCCCCCCTCCTCCACAAGCTCTCTCA
TCTCCATGATGTCGAACTTCTCCTTCATGCCTTGTATTTAACATGCCACA
GAAAGCCCGGCCTACGCATCGTTCGAACGACAGTGCCCTTTCTAATTCAA
TGAATGGAAGAGGTCGTGCCCACCTCTTGGGGGATCCGAAAGACCTGGAG
AAAGGCGGAACAGACTGGCAAGCGGCTCGCAGCCAGCTCCCACCGCTGTG
GGTGGACGTGGTTGATCGGGTGGGTGTAGAAGCATGCCAAGTGCGGGGAA
AGTATCCAATGCCCCCGCGTCATCCCTCTGTCCAGGATGCCTTGTCCTTT
TCCCCCTTGCCCGGCTTTTTGACTCTTCGAATCGCCGGCCGCCCCTGGTC
CCCGACCCCGACTCACAGGTGGACGAGGCAATCCGAAACATCCAAGGGCA
AATGAAGGAACTATCCAGGCTACACCGGAAGCGGCTCCTGGTCTCTTTCG
ACGAAAAGGCGGAAGCTGGCAAAGAGCAGGAGATCCTGGCCTTGACCGAA
GCCATTACGGAGCAGTTCCGGGTCGTGGAAAGAAAATTAACCGCTGTGGG
GGGGCAGATGGAGGGTGAAAGCGACGCTGAGGTACCAGCGGGTGGAGGCA
GAGAAAAGGACATTGGGGGGGGCTGCCCCATCGGAACGAGCGTGTCACCC
CTCCTCTCCTCCTTCCCTCCCTCCTCCACGCCCCCTTGCACAGGTCAAAG
TACGTCGCAATCTCCAACGATCCATGGCCTCCAAGACGCAACGGCTCTCA
CACGCGTTCCGGTTTCAGCAAAAAGACTACCTGAAAAAGCTCCGGGCGCA
GAAGGAGGGGGCGATGGGCGGGGGTGAGTTTGCCTTCTTGGACAAGGACG
AAGGCGGGGAACCAGTCCTAGTGCCGGACAATCGTTCAGAGACCGGCTTC
CGACAAGCCCAGGTGACGGTGCTTGAGAGCGCGGAGGCGCTGGTGCAGGA
GCGTGACTCGGAAATAGCGCGTATCGCCGAGGGAATCGAAGCGCTCGCCC
ACGTGATGAAACGGCTCGGGGAGCTCGTCATCGACCAAGGCTCCGTCCTG
GATCGGATCGACTACAACATCGGTACGCAGGATACCCAAAGAATGCCCCT
GTCTATCTCCCTGTCGCACCAGGCCGTTGCATGAAAACAAAGCCAGCCCA
CCTTGTTGCCCTCCTTCCCACCCTCCTTCCCTCCCTCCCTCCCTCCCTCC
CACTTCTCAGACATGGCCGTCGATCGCGTCCAGCAAGGTGTCACCCAACT
GGAAGCAACGGAAAAAATCCAGAAACAAGGAGGAGCAACCTCCTGTATCC
TTACCCTCATCTTTCTGATCTTCGCCCTCCTTGTGGTGCAGGTGATCAAG
CACGCGCCTCGGAAACGGTAGCGAGAGGCAGGGATGGGGGTTGAATGGGA
AAAGGGATGGAGAGGGTTGTATGATACAAGGGCCGGGGAAGGATCAGGAA
CAGCGGACGGTGTATGATAGAGAGGGGCTTTTGATGTGTGCGCGTCTAAG
TGGCCGCTGCCAAGAAGGAAAGGAAAGAGGGGGTGAGACGCCCCTCTCAT
CGGCTTCCAATCACCGAACGAGCCCTCCCTCAAGCCTCCTGCTCACACGA
AGAAACCTGGGAGTTACCATGCTTGATTTGCTTTCTGGTTCAGGCGTTTG
TCTGGGAGGCGAACACGATGCGGTTGCCTGACGCACACGCATGCGTGGTC
AAGGGAGTCTGTTTTCCTCCTCAGCTTCTTTTC

Coding sequence (CDS) from alignment at CM002459.1:1131454..1133536-

>rna2757 ID=rna2757|Name=rna2757|organism=Nannochloropsis gaditana|type=CDS|length=3720bp|location=Sequence derived from alignment at CM002459.1:1131454..1133536- (Nannochloropsis gaditana)
ACATGGCCGTCGATCGCGTCCAGCAAGGTGTCACCCAACTGGAAGCAACG
GAAAAAATCCAGAAACAAGGAGGAGCAACCTCCTGTATCCTTACCCTCAT
CTTTCTGATCTTCGCCCTCCTTGTGGTGCAGGTGATCAAGCACGCGCCTC
GGAAACGGTAGGTCAAAGTACGTCGCAATCTCCAACGATCCATGGCCTCC
AAGACGCAACGGCTCTCACACGCGTTCCGGTTTCAGCAAAAAGACTACCT
GAAAAAGCTCCGGGCGCAGAAGGAGGGGGCGATGGGCGGGGGTGAGTTTG
CCTTCTTGGACAAGGACGAAGGCGGGGAACCAGTCCTAGTGCCGGACAAT
CGTTCAGAGACCGGCTTCCGACAAGCCCAGGTGACGGTGCTTGAGAGCGC
GGAGGCGCTGGTGCAGGAGCGTGACTCGGAAATAGCGCGTATCGCCGAGG
GAATCGAAGCGCTCGCCCACGTGATGAAACGGCTCGGGGAGCTCGTCATC
GACCAAGGCTCCGTCCTGGATCGGATCGACTACAACATCGGTGGACGAGG
CAATCCGAAACATCCAAGGGCAAATGAAGGAACTATCCAGGCTACACCGG
AAGCGGCTCCTGGTCTCTTTCGACGAAAAGGCGGAAGCTGGCAAAGAGCA
GGAGATCCTGGCCTTGACCGAAGCCATTACGGAGCAGTTCCGGGTCGTGG
AAAGAAAATTAACCGCTGTGGGGGGGCAGATGGAGGGTGAAAGCGACGCT
GAGATGCCACAGAAAGCCCGGCCTACGCATCGTTCGAACGACAGTGCCCT
TTCTAATTCAATGAATGGAAGAGGTCGTGCCCACCTCTTGGGGGATCCGA
AAGACCTGGAGAAAGGCGGAACAGACTGGCAAGCGGCTCGCAGCCAGCTC
CCACCGCTGTGGGTGGACGTGGTTGATCGGACATGGCCGTCGATCGCGTC
CAGCAAGGTGTCACCCAACTGGAAGCAACGGAAAAAATCCAGAAACAAGG
AGGAGCAACCTCCTGTATCCTTACCCTCATCTTTCTGATCTTCGCCCTCC
TTGTGGTGCAGGTGATCAAGCACGCGCCTCGGAAACGGTAGGTCAAAGTA
CGTCGCAATCTCCAACGATCCATGGCCTCCAAGACGCAACGGCTCTCACA
CGCGTTCCGGTTTCAGCAAAAAGACTACCTGAAAAAGCTCCGGGCGCAGA
AGGAGGGGGCGATGGGCGGGGGTGAGTTTGCCTTCTTGGACAAGGACGAA
GGCGGGGAACCAGTCCTAGTGCCGGACAATCGTTCAGAGACCGGCTTCCG
ACAAGCCCAGGTGACGGTGCTTGAGAGCGCGGAGGCGCTGGTGCAGGAGC
GTGACTCGGAAATAGCGCGTATCGCCGAGGGAATCGAAGCGCTCGCCCAC
GTGATGAAACGGCTCGGGGAGCTCGTCATCGACCAAGGCTCCGTCCTGGA
TCGGATCGACTACAACATCGGTGGACGAGGCAATCCGAAACATCCAAGGG
CAAATGAAGGAACTATCCAGGCTACACCGGAAGCGGCTCCTGGTCTCTTT
CGACGAAAAGGCGGAAGCTGGCAAAGAGCAGGAGATCCTGGCCTTGACCG
AAGCCATTACGGAGCAGTTCCGGGTCGTGGAAAGAAAATTAACCGCTGTG
GGGGGGCAGATGGAGGGTGAAAGCGACGCTGAGATGCCACAGAAAGCCCG
GCCTACGCATCGTTCGAACGACAGTGCCCTTTCTAATTCAATGAATGGAA
GAGGTCGTGCCCACCTCTTGGGGGATCCGAAAGACCTGGAGAAAGGCGGA
ACAGACTGGCAAGCGGCTCGCAGCCAGCTCCCACCGCTGTGGGTGGACGT
GGTTGATCGGACATGGCCGTCGATCGCGTCCAGCAAGGTGTCACCCAACT
GGAAGCAACGGAAAAAATCCAGAAACAAGGAGGAGCAACCTCCTGTATCC
TTACCCTCATCTTTCTGATCTTCGCCCTCCTTGTGGTGCAGGTGATCAAG
CACGCGCCTCGGAAACGGTAGGTCAAAGTACGTCGCAATCTCCAACGATC
CATGGCCTCCAAGACGCAACGGCTCTCACACGCGTTCCGGTTTCAGCAAA
AAGACTACCTGAAAAAGCTCCGGGCGCAGAAGGAGGGGGCGATGGGCGGG
GGTGAGTTTGCCTTCTTGGACAAGGACGAAGGCGGGGAACCAGTCCTAGT
GCCGGACAATCGTTCAGAGACCGGCTTCCGACAAGCCCAGGTGACGGTGC
TTGAGAGCGCGGAGGCGCTGGTGCAGGAGCGTGACTCGGAAATAGCGCGT
ATCGCCGAGGGAATCGAAGCGCTCGCCCACGTGATGAAACGGCTCGGGGA
GCTCGTCATCGACCAAGGCTCCGTCCTGGATCGGATCGACTACAACATCG
GTGGACGAGGCAATCCGAAACATCCAAGGGCAAATGAAGGAACTATCCAG
GCTACACCGGAAGCGGCTCCTGGTCTCTTTCGACGAAAAGGCGGAAGCTG
GCAAAGAGCAGGAGATCCTGGCCTTGACCGAAGCCATTACGGAGCAGTTC
CGGGTCGTGGAAAGAAAATTAACCGCTGTGGGGGGGCAGATGGAGGGTGA
AAGCGACGCTGAGATGCCACAGAAAGCCCGGCCTACGCATCGTTCGAACG
ACAGTGCCCTTTCTAATTCAATGAATGGAAGAGGTCGTGCCCACCTCTTG
GGGGATCCGAAAGACCTGGAGAAAGGCGGAACAGACTGGCAAGCGGCTCG
CAGCCAGCTCCCACCGCTGTGGGTGGACGTGGTTGATCGGACATGGCCGT
CGATCGCGTCCAGCAAGGTGTCACCCAACTGGAAGCAACGGAAAAAATCC
AGAAACAAGGAGGAGCAACCTCCTGTATCCTTACCCTCATCTTTCTGATC
TTCGCCCTCCTTGTGGTGCAGGTGATCAAGCACGCGCCTCGGAAACGGTA
GGTCAAAGTACGTCGCAATCTCCAACGATCCATGGCCTCCAAGACGCAAC
GGCTCTCACACGCGTTCCGGTTTCAGCAAAAAGACTACCTGAAAAAGCTC
CGGGCGCAGAAGGAGGGGGCGATGGGCGGGGGTGAGTTTGCCTTCTTGGA
CAAGGACGAAGGCGGGGAACCAGTCCTAGTGCCGGACAATCGTTCAGAGA
CCGGCTTCCGACAAGCCCAGGTGACGGTGCTTGAGAGCGCGGAGGCGCTG
GTGCAGGAGCGTGACTCGGAAATAGCGCGTATCGCCGAGGGAATCGAAGC
GCTCGCCCACGTGATGAAACGGCTCGGGGAGCTCGTCATCGACCAAGGCT
CCGTCCTGGATCGGATCGACTACAACATCGGTGGACGAGGCAATCCGAAA
CATCCAAGGGCAAATGAAGGAACTATCCAGGCTACACCGGAAGCGGCTCC
TGGTCTCTTTCGACGAAAAGGCGGAAGCTGGCAAAGAGCAGGAGATCCTG
GCCTTGACCGAAGCCATTACGGAGCAGTTCCGGGTCGTGGAAAGAAAATT
AACCGCTGTGGGGGGGCAGATGGAGGGTGAAAGCGACGCTGAGATGCCAC
AGAAAGCCCGGCCTACGCATCGTTCGAACGACAGTGCCCTTTCTAATTCA
ATGAATGGAAGAGGTCGTGCCCACCTCTTGGGGGATCCGAAAGACCTGGA
GAAAGGCGGAACAGACTGGCAAGCGGCTCGCAGCCAGCTCCCACCGCTGT
GGGTGGACGTGGTTGATCGG

Synonyms

Publications