EWM27922.1, cds2749 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|585110262|gb|EWM27922.1| (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana]) HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query: 1 MPQKARPTHRSNDSALSNSMNGRGRAHLLGDPKDLEKGGTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHAPRKR 309
MPQKARPTHRSNDSALSNSMNGRGRAHLLGDPKDLEKGGTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHAPRKR
Sbjct: 1 MPQKARPTHRSNDSALSNSMNGRGRAHLLGDPKDLEKGGTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHAPRKR 309
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|553189104|ref|XP_005854931.1| (syntaxin-like protein [Nannochloropsis gaditana CCMP526] >gi|422294119|gb|EKU21419.1| syntaxin-like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 303.138 bits (775), Expect = 2.273e-93 Identity = 160/199 (80.40%), Postives = 166/199 (83.42%), Query Frame = 0
Query: 71 MKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKT------------QRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNID 257
MKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEV ++ + S ++YLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESA+ALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNID
Sbjct: 1 MKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVPAGGGREKDIGGSCPIGTSVSPLLSSFPPSSTPPCTGQNYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESADALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNID 199
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|298713072|emb|CBJ48847.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 204.912 bits (520), Expect = 9.846e-61 Identity = 121/267 (45.32%), Postives = 169/267 (63.30%), Query Frame = 0
Query: 39 GTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHA 305
GT W + R QLPPLWVD VD V+E +R IQ +++ELS LH KRL+V+FDE +EA +E+++ T +T FR ER+L + G+ G + AE VR N+QR+ A K Q LS FR QKDYL++L+AQK+G G F FL ++E R + GF + Q+ VLE E LV +RD EI I + IE L+ + K L LVIDQG++LDRID+N++ V+ ++GV+QL+ E+ QK CI L+ LI +L + V KH+
Sbjct: 46 GTSWASTRHQLPPLWVDKVDGVEEDVRLIQLKLRELSALHTKRLMVTFDE-SEAERERDVEDATREVTALFRRAERQLKHLMGESAGLTPAEATVRNNIQRATARKLQSLSGGFRTSQKDYLRRLQAQKKG---DGAFDFLAEEERASKH--AKGRLDPGFNEQQMAVLEDTEVLVGQRDGEINNIVKSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQVVEHTREGVSQLQRAEEHQKSALPLKCIGILVVLIIIMLGLLVWKHS 306
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|585113190|gb|EWM30526.1| (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana]) HSP 1 Score: 200.675 bits (509), Expect = 4.773e-59 Identity = 131/307 (42.67%), Postives = 173/307 (56.35%), Query Frame = 0
Query: 5 ARPTHRSNDSALSNSMNGRGRAHLLGDPKDLEKGGTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVK-VRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRS------ETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKH 304
A+ R++ S LS G LL D + T W AAR QLPP WVD+VDRVD I+ +MKEL LHRKRLLV FD+ +EA +E++I +T+ IT R E L +GG K V RN+Q+SMA + Q LS FR QK Y+ +L+AQK GA F FL G L + R+ E GF Q+ VLE E ERD EI IA IE L+ + + L LVIDQG+VLDRID+N++ V+ ++GV QL E+ QK AT CI+ L+ IF ++++ +IKH
Sbjct: 17 AKIIGRNSLSPLSGYTMDSG---LLEDAS--QDSNTGWAAARMQLPPAWVDLVDRVDTLTAQIEAKMKELEALHRKRLLVGFDD-SEAARERDIDFITQEITGMLREAESALKQLGGGGADGGGGTEKLVTRNVQKSMAKRIQALSIEFRASQKHYMAQLKAQKSGA--APLFDFL---AAGHDTLETERRAREENGMEGGFTPEQLAVLEEQEVTTAERDREIQHIARSIEELSQIFRELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLCSIFVMVLILIIKH 312
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|1173928476|gb|OQR82056.1| (syntaxin [Thraustotheca clavata]) HSP 1 Score: 190.66 bits (483), Expect = 2.634e-55 Identity = 110/260 (42.31%), Postives = 160/260 (61.54%), Query Frame = 0
Query: 45 ARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKH 304
A+ Q P WVD V V+ I I+ M++L ++H KRL+V FD +E+ E+EI ++T IT +FR ER L A +G S+A+ K R+N+QR++A++ Q LS FR QK+YL +++ Q++G EF FL EP + + GF QAQ+ +E AE L+ ERD E+ +IA I+ LA + K L LVIDQG++LDRIDYN++ V+R Q GV +LE E IQK CI L+ LI A+ ++ ++KH
Sbjct: 53 AKMQGAPAWVDAVTDVNIHIARIKHLMEKLGKIHTKRLMVRFD-GSESEHEREIESITGEITSEFRSAERILKAKMNGKDGISEADAKTRQNVQRALATQLQTLSADFRKSQKEYLDRVKNQRQGP---AEFEFL-----SEPKKTKTSGLDGGFMQAQLAEVELAEDLINERDREVQQIATSIQELATIFKELAVLVIDQGTILDRIDYNMEQVVERTQAGVVELEKAETIQKSARPMKCIGILLALITAMTIILILKH 303
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|1214694308|gb|OWZ08393.1| (Syntaxin [Phytophthora megakarya]) HSP 1 Score: 189.119 bits (479), Expect = 1.324e-54 Identity = 110/267 (41.20%), Postives = 168/267 (62.92%), Query Frame = 0
Query: 41 DWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVG-GQMEGE-SDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHA 305
+ +A + P WVDVV+ ++ + I+ M++L++LH RL+V FD +E+ EQEI +T+ ITE+FR E+ L + GE S A+ K R+N+QR++A++ Q LS FR QK YL +++ QKEG + EF FL +++ + ++TGF QAQ+T +E AE ++ ERD EI RIA I LA + K L LVIDQG++LDRIDYN++ V++ ++G+ +LE E+ QK CI L+ LIF + V+ V+KH+
Sbjct: 42 ELEATSVAIAPGWVDVVNGTNQHVARIKEMMEKLNKLHTSRLMVRFD-GSESRYEQEIDHMTQEITEEFRSAEKGLRRMAQSDRNGEFSAADAKTRQNVQRALATQLQTLSVDFRKSQKTYLARVKNQKEGPV---EFDFLAENDAKQK---RRGGADTGFTQAQITEVEIAEDVINERDHEIQRIATSITELATIFKELAVLVIDQGTILDRIDYNMEQVVEQTEKGIEELEKAEETQKNSRPMKCIGLLLVLIFIMTVLLVLKHS 301
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|301120818|ref|XP_002908136.1| (syntaxin-like protein [Phytophthora infestans T30-4] >gi|262103167|gb|EEY61219.1| syntaxin-like protein [Phytophthora infestans T30-4]) HSP 1 Score: 187.963 bits (476), Expect = 2.904e-54 Identity = 109/267 (40.82%), Postives = 170/267 (63.67%), Query Frame = 0
Query: 41 DWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVG-GQMEGE-SDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHA 305
D ++ + P WVDVV+ ++ + I+ M++L++LH RL+V FD + E+ E+EI LT+ IT++FR E+ L + +GE S A+ K R+N+QR++A++ Q LS FR QK YL +++ QKEG + EF FL +++ + ++TGF QAQ+T +E AE ++ ERD EI RIA I LA + K L LVIDQG++LDRIDYN++ V++ ++G+ +LE E+ QK CI L+ LIFA+ ++ V+KH+
Sbjct: 42 DQESTSVAIAPGWVDVVNGTNQHVARIKEMMEKLNKLHTSRLMVRFDGQ-ESKYEREIDQLTQDITDEFRSAEKGLRRMAQSDRDGEFSAADAKTRQNVQRALATQLQTLSGDFRKSQKTYLARVKNQKEGPV---EFDFLAENDAKQK---RRGGADTGFTQAQITEVEIAEDVINERDQEIQRIATSITELATIFKELAVLVIDQGTILDRIDYNMEQVVEQTEKGIEELEKAEETQKNSRPMKCIGLLLVLIFAMTLLLVLKHS 301
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|695413136|ref|XP_009525939.1| (hypothetical protein PHYSODRAFT_300143 [Phytophthora sojae] >gi|348677064|gb|EGZ16881.1| hypothetical protein PHYSODRAFT_300143 [Phytophthora sojae]) HSP 1 Score: 187.578 bits (475), Expect = 3.924e-54 Identity = 109/265 (41.13%), Postives = 167/265 (63.02%), Query Frame = 0
Query: 43 QAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVG-GQMEGE-SDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHA 305
+A + P WVDVV+ ++ + I+ M++L++LH RL+V FD +E+ EQEI +T+ IT++FR E+ L + GE S A+ K R+N+QR++A++ Q LS FR QK YL +++ QKEG + EF FL ++E + ++TGF QAQ+T +E AE ++ ERD EI RIA I LA + K L LVIDQG++LDRIDYN++ V++ ++G+ +LE E+ QK CI L+ +IF + V+ V+KH+
Sbjct: 44 EATSVAIAPGWVDVVNGTNQHVARIKEMMEKLNKLHTSRLMVRFD-GSESKYEQEIDHVTQEITDEFRSAEKGLRRMAQSDRNGEFSAADAKTRQNVQRALATQLQTLSGDFRKSQKTYLARVKNQKEGPV---EFDFLAENEARQK---RRGGADTGFTQAQITEVEIAEDVINERDQEIQRIATSITELATIFKELAVLVIDQGTILDRIDYNMEQVVEQTEKGIEELEKAEETQKNSRPMKCIGLLLVMIFIMTVLLVLKHS 301
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|675195335|ref|XP_008906552.1| (hypothetical protein PPTG_12093 [Phytophthora parasitica INRA-310] >gi|566023008|gb|ETI45919.1| hypothetical protein F443_09629 [Phytophthora parasitica P1569] >gi|567960323|gb|ETK85885.1| hypothetical protein L915_09425 [Phytophthora parasitica] >gi|567989044|gb|ETL39312.1| hypothetical protein L916_09328 [Phytophthora parasitica] >gi|568018247|gb|ETL92422.1| hypothetical protein L917_09259 [Phytophthora parasitica] >gi|568048699|gb|ETM45733.1| hypothetical protein L914_09287 [Phytophthora parasitica] >gi|568093468|gb|ETN08264.1| hypothetical protein PPTG_12093 [Phytophthora parasitica INRA-310] >gi|570326660|gb|ETO74608.1| hypothetical protein F444_09693 [Phytophthora parasitica P1976] >gi|570950566|gb|ETP15823.1| hypothetical protein F441_09557 [Phytophthora parasitica CJ01A1] >gi|570984122|gb|ETP43798.1| hypothetical protein F442_09534 [Phytophthora parasitica P10297] >gi|970637632|gb|KUF81571.1| Syntaxin-41 [Phytophthora nicotianae]) HSP 1 Score: 187.578 bits (475), Expect = 4.661e-54 Identity = 109/267 (40.82%), Postives = 168/267 (62.92%), Query Frame = 0
Query: 41 DWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVG-GQMEGE-SDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHA 305
D +A + P WVDVV+ ++ + I+ M++L++LH RL+V FD + E+ E+EI LT+ IT++FR E+ L + GE S A+ K R+N+QR++A++ Q LS FR QK YL +++ QKEG + EF FL +++ + ++TGF QAQ+T +E AE ++ ERD EI RIA I LA + K L LVIDQG++LDRIDYN++ V++ ++G+ +LE E+ QK CI L+ +IF + V+ V+KH+
Sbjct: 42 DQEATSVAIAPGWVDVVNGTNQHVARIKEMMEKLNKLHTSRLMVRFDGQ-ESKYEREIDQLTQDITDEFRSAEKGLRRMAQSDRNGEFSAADAKTRQNVQRALATQLQTLSGDFRKSQKTYLARVKNQKEGPV---EFDFLAENDAKQK---RRGGADTGFTQAQITEVEIAEDVINERDQEIQRIATSITELATIFKELAVLVIDQGTILDRIDYNMEQVVEQTEKGIEELEKAEETQKNSRPMKCIGLLLVMIFVMTVLLVLKHS 301
BLAST of EWM27922.1 vs. NCBI_GenBank
Match: gi|1173944877|gb|OQR93563.1| (syntaxin-like protein [Achlya hypogyna]) HSP 1 Score: 185.652 bits (470), Expect = 2.605e-53 Identity = 108/261 (41.38%), Postives = 159/261 (60.92%), Query Frame = 0
Query: 44 AARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKH 304
A ++ P WVD V V+ I I+ M++L ++H KRL+V FD +E+ E+EI ++T IT +FR ER L A +G S+A+ K R+N+QR++A++ Q LS FR QK+YL +++ Q++G EF FL + + D GF QAQ+ +E AE L+ ERD E+ +IA I+ LA + K L LVIDQG++LDRIDYN++ V+R Q GV +LE E IQK CI L+ LI A+ ++ ++KH
Sbjct: 55 AKKAAQTPGWVDAVTDVNIHIARIKLLMEKLGKMHTKRLMVRFD-NSESDHEREIESITADITNEFRNAERILKAKMNGKDGVSEADAKARQNVQRALATQLQTLSADFRKSQKEYLDRVKNQRQGP---AEFEFLSETKKTSKTSGLDG----GFMQAQMAEVELAEDLINERDREVQQIATSIQELATIFKELAVLVIDQGTILDRIDYNMEQVVERTQAGVVELEKAETIQKSARPMKCIGILLALITAMTIILMLKH 307 The following BLAST results are available for this feature:
BLAST of EWM27922.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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