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Properties
Property Name | Value |
Product | ccaat-box binding factor hap3 |
Orig transcript id | gnl|cribi|Naga_100008g90.7933.mrna |
Orig protein id | gnl|cribi|Naga_100008g90.7933 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002459.1 | supercontig | CM002459.1:1036062..1037514 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2718 ID=rna2718|Name=rna2718|organism=Nannochloropsis gaditana|type=mRNA|length=342bp ATGAGAGCAGAAGTGGTAAGGAGAAGAGTGCAACCGGGGGTAAATCATAT AGGGAGTCAGAAAAATAATTGGAGTCACCCTCAGGCAGCAGTCACCGATG GGCTGCTCGGACAGGGGGGTTCGTTGTCACTTGACCCCCCGGCGTCTTTT GATTACATGACCGGTGGGACTTTGCATTCTTTTGCGCTGACAGGGGTACA TGACAAAGGCTGTAAACCTAGTAGATATACACGGGAATCGAAACTCACAC ATATGGGGAACCGGCGGCGGACACGGGCATGTTTCGCCAGCTGGGTTCTC TCTTGGCTTGAAGACCCGCCTTTTTCTTATATTTGGAAATGA back to topprotein sequence of rna2718 >rna2718-protein ID=rna2718-protein|Name=rna2718|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKD AKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYV EPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEP QGDSRVESTESSSLPEQQHHSYAARAVSRQPPS back to topmRNA from alignment at CM002459.1:1036062..1037514- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2718 ID=rna2718|Name=rna2718|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp|location=Sequence derived from alignment at CM002459.1:1036062..1037514- (Nannochloropsis gaditana) GCCACAGCATGGTCATGCTCGGGATGACGTTGTCTTCGTGAGGATAAGGG
GAAGGAATAAGGACGGTGAATATCACACGCAGGGCAGCTACTTGATGCGC
AGACTGCCTCCTAGAAGAAACCTCTGGATGCATTGATATCCGCCCCGCTT
ACACTCCAGCACGGCCTTAACTCGGCCCTTGATACCGACAGGTGAGGCAC
GGATATCAGACGGTGCGCATGGATGAGGCGGGAGCCAACGAGGCAGGGGG
TCGTGTTGGTGGCGCCGGCGTGGAGGAGGTCCGGGAACAAGACAGATATT
TGCCCATTGCCAACATCAGTCGGATAATGAAGAAGTCTTTGGTAAGTGTC
GTGACGCATCCTAATAGTGCGCTCCTTCTAGATGTCCCAACATCTGTCGC
CGATAGACCTTGTTTTGTCCCACAAGTCTCCTGTTCCCATCCTCTTCTAC
CATGTTCTCTTTCCTCACTCATGTGCTCCCTCTCTCGCCACTAATCCGGG
CAGCCGGCGAATGCCAAAATAGCCAAGGACGCCAAAGAAACCGTCCAAGA
ATGTGTTTCAGAGTTCATTTCTTTCATCACCTCCGAAGCCAGCGACAAAT
GCCAACAGGAGAAGCGAAAGACGATCAACGGGGACGATCTCCTCTGGGCC
ATGAGCACCCTGGGCTTCGACAAATACGTCGAGCCTCTGAAACATTATTT
GGTCAAGTACCGTGAGTCAGTGAAGGGGGGTGAGAAGGCGGACGGAGGGA
AGAAAGGGAAGTCTGAGGGCACCCAAGTGACAGGAAGTAGCGCGGCGGGT
CCTGTCACGGCGACCGCGCTAGCTGAGCCTCAGGGTGACAGTCGGGTGGA
ATCGACCGAAAGCAGTAGTCTCCCCGAGCAGCAACATCACAGTTATGCAG
CCCGTGCTGTGTCAAGGCAGCCGCCTTCCTGAGTCCGGCGGTGTGTGCTT
GTCAGTTTCATGGGGGGGGGATCGAAGCGCTGTGCCCCAGTGAGAGAGAG
GGAAAAAAAGAGAGAGGAAGAGAGGAAAGAGATATGGAGATGGATAGAGG
AAGGGACAGTGGGGGAAAAGGAAAGGGTGCATGCGCTCACACAATGGGAG
GCACGTGGCAAAACCTGTGTAATGTCATCTGCGTTACCCCGGATTATAAA
TATGGCTCGTGCGTTGGGTAGACAAAGTAAGGCTTCGTCGGGCCCACGAT
TTGTGGAAAGACTGTTAATACGTGTCGAGGATGAGATCATTCATGGTGAA
TGCGACCGCCTGATGGGCTGTGTCGTATCGTTCATGCAGGGTGGCATTCA
GGAACGGAGCATCTTATCGTTGAGGGGAACATCGGCAAGAGTAAAAAGAT
AGGTCGACGTCATGACGGGAACGGTTTGACCAGTGTCACAGCATCACGCG
ATTATTTTCTCGCAGATAAAAAAATCACTCTCAAGAATTTGTATGTCCTT
TCC back to topCoding sequence (CDS) from alignment at CM002459.1:1036062..1037514- >rna2718 ID=rna2718|Name=rna2718|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002459.1:1036062..1037514- (Nannochloropsis gaditana) CCGGCGAATGCCAAAATAGCCAAGGACGCCAAAGAAACCGTCCAAGAATG TGTTTCAGAGTTCATTTCTTTCATCACCTCCGAAGCCAGCGACAAATGCC AACAGGAGAAGCGAAAGACGATCAACGGGGACGATCTCCTCTGGGCCATG AGCACCCTGGGCTTCGACAAATACGTCGAGCCTCTGAAACATTATTTGGT CAAGTACCGTGAGTCAGTGAAGGGGGGTGAGAAGGCGGACGGAGGGAAGA AAGGGAAGTCTGAGGGCACCCAAGTGACAGGAAGTAGCGCGGCGGGTCCT GTCACGGCGACCGCGCTAGCTGAGCCTCAGGGTGACAGTCGGGTGGAATC GACCGAAAGCAGTAGTCTCCCCGAGCAGCAACATCACAGTTATGCAGCCC GTGCTGTGTCAAGGCAGCCGCCTTCCTGAATGGATGAGGCGGGAGCCAAC GAGGCAGGGGGTCGTGTTGGTGGCGCCGGCGTGGAGGAGGTCCGGGAACA AGACAGATATTTGCCCATTGCCAACATCAGTCGGATAATGAAGAAGTCTT TGCCGGCGAATGCCAAAATAGCCAAGGACGCCAAAGAAACCGTCCAAGAA TGTGTTTCAGAGTTCATTTCTTTCATCACCTCCGAAGCCAGCGACAAATG CCAACAGGAGAAGCGAAAGACGATCAACGGGGACGATCTCCTCTGGGCCA TGAGCACCCTGGGCTTCGACAAATACGTCGAGCCTCTGAAACATTATTTG GTCAAGTACCGTGAGTCAGTGAAGGGGGGTGAGAAGGCGGACGGAGGGAA GAAAGGGAAGTCTGAGGGCACCCAAGTGACAGGAAGTAGCGCGGCGGGTC CTGTCACGGCGACCGCGCTAGCTGAGCCTCAGGGTGACAGTCGGGTGGAA TCGACCGAAAGCAGTAGTCTCCCCGAGCAGCAACATCACAGTTATGCAGC CCGTGCTGTGTCAAGGCAGCCGCCTTCCTGAATGGATGAGGCGGGAGCCA ACGAGGCAGGGGGTCGTGTTGGTGGCGCCGGCGTGGAGGAGGTCCGGGAA CAAGACAGATATTTGCCCATTGCCAACATCAGTCGGATAATGAAGAAGTC TTTG back to top
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