EWM28041.1, cds2710 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|585110382|gb|EWM28041.1| (ccaat-box binding factor hap3 [Nannochloropsis gaditana]) HSP 1 Score: 375.941 bits (964), Expect = 5.406e-132 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 Query: 1 MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQQHHSYAARAVSRQPPS 183 MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQQHHSYAARAVSRQPPS Sbjct: 1 MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQQHHSYAARAVSRQPPS 183
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|219111567|ref|XP_002177535.1| (histone-like transcription factor [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412070|gb|EEC51998.1| histone-like transcription factor [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 190.66 bits (483), Expect = 2.233e-59 Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 0 Query: 15 GAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKG 116 G EE+REQDRYLPIANI+RIMK +LP NAKIAKD+KETVQECVSEFISFITSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLK YL KYRE+VKG Sbjct: 13 GEEYEEIREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVKG 114
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|856116617|tpg|DAA64773.1| (TPA_inf: CCAAT-box binding factor HAP3-like protein [Physcomitrella patens]) HSP 1 Score: 191.43 bits (485), Expect = 4.013e-59 Identity = 101/148 (68.24%), Postives = 110/148 (74.32%), Query Frame = 0 Query: 2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRE-----SVKGGEKADGGKKGK---SEGTQVTGSSAAGP 141 DE G N GG + VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF+ YVEPLK YL KYRE + K GE + G K+G S G Q+ P Sbjct: 16 DEYGGNHGGGDRDNS---SVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYREIEGALTNKAGESSSGKKEGSNIVSPGVQMVQQGGYNP 160
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|158032026|gb|ABW09466.1| (CCAAT-box binding factor HAP3-like protein, partial [Selaginella moellendorffii]) HSP 1 Score: 190.274 bits (482), Expect = 4.850e-59 Identity = 101/166 (60.84%), Postives = 117/166 (70.48%), Query Frame = 0 Query: 2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQ 167 D +++AGG G VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++Y+EPLK YL KYRE+ + D G K EG + + PV ++ T S LP+Q Sbjct: 2 DSPHSDDAGGHGGERDNSNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYRET-----EGDKGSGVKGEGKKDQSMAVPSPVQSSMY-----------TSMSYLPQQ 151
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|302784496|ref|XP_002974020.1| (CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|302803438|ref|XP_002983472.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300148715|gb|EFJ15373.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300158352|gb|EFJ24975.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii]) HSP 1 Score: 191.045 bits (484), Expect = 5.066e-59 Identity = 101/166 (60.84%), Postives = 117/166 (70.48%), Query Frame = 0 Query: 2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQ 167 D +++AGG G VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++Y+EPLK YL KYRE+ + D G K EG + + PV ++ T S LP+Q Sbjct: 11 DSPHSDDAGGHGGERDNSNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYRET-----EGDKGSGVKGEGKKDQSMAVPSPVQSSMY-----------TSMSYLPQQ 160
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|303284921|ref|XP_003061751.1| (histone-like transcription factor [Micromonas pusilla CCMP1545] >gi|226457081|gb|EEH54381.1| histone-like transcription factor [Micromonas pusilla CCMP1545]) HSP 1 Score: 189.889 bits (481), Expect = 5.274e-59 Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 0 Query: 19 EEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKG 126 E VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++YVEPLK YL KYRE+ GEKA+ K G Sbjct: 21 ENVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYVEPLKVYLHKYRET--EGEKAEKSKAG 126
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|397627725|gb|EJK68593.1| (hypothetical protein THAOC_10212 [Thalassiosira oceanica]) HSP 1 Score: 191.815 bits (486), Expect = 5.467e-59 Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 0 Query: 15 GAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGK 127 G G EEVREQDRYLPIANI+RIMK LP AKIAKD+KE VQECVSEFISF+TSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLK YL KYRE+V+G + G G+ Sbjct: 61 GDGYEEVREQDRYLPIANIARIMKNELPEQAKIAKDSKEAVQECVSEFISFVTSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKIYLAKYREAVRGDKPDKGTNVGR 173
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|302784494|ref|XP_002974019.1| (CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|302803436|ref|XP_002983471.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300148714|gb|EFJ15372.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300158351|gb|EFJ24974.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii]) HSP 1 Score: 190.66 bits (483), Expect = 6.139e-59 Identity = 101/166 (60.84%), Postives = 117/166 (70.48%), Query Frame = 0 Query: 2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQ 167 D +++AGG G VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++Y+EPLK YL KYRE+ + D G K EG + + PV ++ T S LP+Q Sbjct: 11 DSPHSDDAGGHGGERDNSNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYRET-----EGDKGSGVKGEGKKDQSMAVPSPVQSSMY-----------TSMSYLPQQ 160
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|856116619|tpg|DAA64774.1| (TPA_inf: CCAAT-box binding factor HAP3-like protein [Physcomitrella patens]) HSP 1 Score: 190.66 bits (483), Expect = 7.986e-59 Identity = 102/164 (62.20%), Postives = 116/164 (70.73%), Query Frame = 0 Query: 2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRE-----SVKGGEKADGGKKGK---SEGTQVTGSSAAGPVTATALAEPQGDSRVE 157 D+ G N G + VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF+ YVEPLK YL KYRE + K GE + G K+G S G Q+ P + P G+ +V+ Sbjct: 16 DDYGGNHGSGERDNS---SVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRETEGALTNKAGESSSGKKEGSGMVSPGVQMVQQGGYNPYMQAQMMNP-GNYQVQ 175
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|1072236081|gb|OEU20809.1| (histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 190.274 bits (482), Expect = 1.092e-58 Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 0 Query: 15 GAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKG 116 G EE+REQDRYLPIANI+RIMK +LP NAKIAKD+KETVQECVSEFISFITSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLK YL KYRE+V+G Sbjct: 19 GDDYEEIREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVRG 120 The following BLAST results are available for this feature:
BLAST of EWM28041.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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