EWM28041.1, cds2710 (CDS) Nannochloropsis gaditana

Overview
NameEWM28041.1
Unique Namecds2710
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1037174..1037296 -
Alignment locationCM002459.1:1036583..1037011 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28041.1
Productccaat-box binding factor hap3
Orig transcript idgnl|cribi|Naga_100008g90.7933.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1037174..1037296 -
CM002459.1supercontigCM002459.1:1036583..1037011 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Homology
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|585110382|gb|EWM28041.1| (ccaat-box binding factor hap3 [Nannochloropsis gaditana])

HSP 1 Score: 375.941 bits (964), Expect = 5.406e-132
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQQHHSYAARAVSRQPPS 183
            MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQQHHSYAARAVSRQPPS
Sbjct:    1 MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQQHHSYAARAVSRQPPS 183          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|219111567|ref|XP_002177535.1| (histone-like transcription factor [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412070|gb|EEC51998.1| histone-like transcription factor [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 190.66 bits (483), Expect = 2.233e-59
Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 0
Query:   15 GAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKG 116
            G   EE+REQDRYLPIANI+RIMK +LP NAKIAKD+KETVQECVSEFISFITSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLK YL KYRE+VKG
Sbjct:   13 GEEYEEIREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVKG 114          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|856116617|tpg|DAA64773.1| (TPA_inf: CCAAT-box binding factor HAP3-like protein [Physcomitrella patens])

HSP 1 Score: 191.43 bits (485), Expect = 4.013e-59
Identity = 101/148 (68.24%), Postives = 110/148 (74.32%), Query Frame = 0
Query:    2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRE-----SVKGGEKADGGKKGK---SEGTQVTGSSAAGP 141
            DE G N  GG    +    VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF+ YVEPLK YL KYRE     + K GE + G K+G    S G Q+       P
Sbjct:   16 DEYGGNHGGGDRDNS---SVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYREIEGALTNKAGESSSGKKEGSNIVSPGVQMVQQGGYNP 160          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|158032026|gb|ABW09466.1| (CCAAT-box binding factor HAP3-like protein, partial [Selaginella moellendorffii])

HSP 1 Score: 190.274 bits (482), Expect = 4.850e-59
Identity = 101/166 (60.84%), Postives = 117/166 (70.48%), Query Frame = 0
Query:    2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQ 167
            D   +++AGG  G      VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++Y+EPLK YL KYRE+     + D G   K EG +    +   PV ++             T  S LP+Q
Sbjct:    2 DSPHSDDAGGHGGERDNSNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYRET-----EGDKGSGVKGEGKKDQSMAVPSPVQSSMY-----------TSMSYLPQQ 151          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|302784496|ref|XP_002974020.1| (CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|302803438|ref|XP_002983472.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300148715|gb|EFJ15373.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300158352|gb|EFJ24975.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii])

HSP 1 Score: 191.045 bits (484), Expect = 5.066e-59
Identity = 101/166 (60.84%), Postives = 117/166 (70.48%), Query Frame = 0
Query:    2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQ 167
            D   +++AGG  G      VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++Y+EPLK YL KYRE+     + D G   K EG +    +   PV ++             T  S LP+Q
Sbjct:   11 DSPHSDDAGGHGGERDNSNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYRET-----EGDKGSGVKGEGKKDQSMAVPSPVQSSMY-----------TSMSYLPQQ 160          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|303284921|ref|XP_003061751.1| (histone-like transcription factor [Micromonas pusilla CCMP1545] >gi|226457081|gb|EEH54381.1| histone-like transcription factor [Micromonas pusilla CCMP1545])

HSP 1 Score: 189.889 bits (481), Expect = 5.274e-59
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 0
Query:   19 EEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKG 126
            E VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++YVEPLK YL KYRE+   GEKA+  K G
Sbjct:   21 ENVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYVEPLKVYLHKYRET--EGEKAEKSKAG 126          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|397627725|gb|EJK68593.1| (hypothetical protein THAOC_10212 [Thalassiosira oceanica])

HSP 1 Score: 191.815 bits (486), Expect = 5.467e-59
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 0
Query:   15 GAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGK 127
            G G EEVREQDRYLPIANI+RIMK  LP  AKIAKD+KE VQECVSEFISF+TSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLK YL KYRE+V+G +   G   G+
Sbjct:   61 GDGYEEVREQDRYLPIANIARIMKNELPEQAKIAKDSKEAVQECVSEFISFVTSEASDKCMQEKRKTINGDDLLWAMSTLGFDKYVEPLKIYLAKYREAVRGDKPDKGTNVGR 173          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|302784494|ref|XP_002974019.1| (CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|302803436|ref|XP_002983471.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300148714|gb|EFJ15372.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii] >gi|300158351|gb|EFJ24974.1| CCAAT-box binding factor HAP3 [Selaginella moellendorffii])

HSP 1 Score: 190.66 bits (483), Expect = 6.139e-59
Identity = 101/166 (60.84%), Postives = 117/166 (70.48%), Query Frame = 0
Query:    2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEPQGDSRVESTESSSLPEQ 167
            D   +++AGG  G      VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF++Y+EPLK YL KYRE+     + D G   K EG +    +   PV ++             T  S LP+Q
Sbjct:   11 DSPHSDDAGGHGGERDNSNVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYRET-----EGDKGSGVKGEGKKDQSMAVPSPVQSSMY-----------TSMSYLPQQ 160          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|856116619|tpg|DAA64774.1| (TPA_inf: CCAAT-box binding factor HAP3-like protein [Physcomitrella patens])

HSP 1 Score: 190.66 bits (483), Expect = 7.986e-59
Identity = 102/164 (62.20%), Postives = 116/164 (70.73%), Query Frame = 0
Query:    2 DEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRE-----SVKGGEKADGGKKGK---SEGTQVTGSSAAGPVTATALAEPQGDSRVE 157
            D+ G N   G    +    VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMSTLGF+ YVEPLK YL KYRE     + K GE + G K+G    S G Q+       P     +  P G+ +V+
Sbjct:   16 DDYGGNHGSGERDNS---SVREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRETEGALTNKAGESSSGKKEGSGMVSPGVQMVQQGGYNPYMQAQMMNP-GNYQVQ 175          
BLAST of EWM28041.1 vs. NCBI_GenBank
Match: gi|1072236081|gb|OEU20809.1| (histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 190.274 bits (482), Expect = 1.092e-58
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 0
Query:   15 GAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKG 116
            G   EE+REQDRYLPIANI+RIMK +LP NAKIAKD+KETVQECVSEFISFITSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLK YL KYRE+V+G
Sbjct:   19 GDDYEEIREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVRG 120          
The following BLAST results are available for this feature:
BLAST of EWM28041.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110382|gb|EWM28041.1|5.406e-132100.00ccaat-box binding factor hap3 [Nannochloropsis gad... [more]
gi|219111567|ref|XP_002177535.1|2.233e-5987.25histone-like transcription factor [Phaeodactylum t... [more]
gi|856116617|tpg|DAA64773.1|4.013e-5968.24TPA_inf: CCAAT-box binding factor HAP3-like protei... [more]
gi|158032026|gb|ABW09466.1|4.850e-5960.84CCAAT-box binding factor HAP3-like protein, partia... [more]
gi|302784496|ref|XP_002974020.1|5.066e-5960.84CCAAT-box binding factor HAP3 [Selaginella moellen... [more]
gi|303284921|ref|XP_003061751.1|5.274e-5985.19histone-like transcription factor [Micromonas pusi... [more]
gi|397627725|gb|EJK68593.1|5.467e-5978.76hypothetical protein THAOC_10212 [Thalassiosira oc... [more]
gi|302784494|ref|XP_002974019.1|6.139e-5960.84CCAAT-box binding factor HAP3 [Selaginella moellen... [more]
gi|856116619|tpg|DAA64774.1|7.986e-5962.20TPA_inf: CCAAT-box binding factor HAP3-like protei... [more]
gi|1072236081|gb|OEU20809.1|1.092e-5886.27histone-fold-containing protein [Fragilariopsis cy... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2718rna2718Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications