rna2718, rna2718 (mRNA) Nannochloropsis gaditana

Overview
Namerna2718
Unique Namerna2718
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length342
Alignment locationCM002459.1:1036062..1037514 -

Link to JBrowse

Properties
Property NameValue
Productccaat-box binding factor hap3
Orig transcript idgnl|cribi|Naga_100008g90.7933.mrna
Orig protein idgnl|cribi|Naga_100008g90.7933
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1036062..1037514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g90gene2599Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2718rna2718-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28041.1cds2710Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2718 ID=rna2718|Name=rna2718|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGAGAGCAGAAGTGGTAAGGAGAAGAGTGCAACCGGGGGTAAATCATAT
AGGGAGTCAGAAAAATAATTGGAGTCACCCTCAGGCAGCAGTCACCGATG
GGCTGCTCGGACAGGGGGGTTCGTTGTCACTTGACCCCCCGGCGTCTTTT
GATTACATGACCGGTGGGACTTTGCATTCTTTTGCGCTGACAGGGGTACA
TGACAAAGGCTGTAAACCTAGTAGATATACACGGGAATCGAAACTCACAC
ATATGGGGAACCGGCGGCGGACACGGGCATGTTTCGCCAGCTGGGTTCTC
TCTTGGCTTGAAGACCCGCCTTTTTCTTATATTTGGAAATGA
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protein sequence of rna2718

>rna2718-protein ID=rna2718-protein|Name=rna2718|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MDEAGANEAGGRVGGAGVEEVREQDRYLPIANISRIMKKSLPANAKIAKD
AKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYV
EPLKHYLVKYRESVKGGEKADGGKKGKSEGTQVTGSSAAGPVTATALAEP
QGDSRVESTESSSLPEQQHHSYAARAVSRQPPS
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mRNA from alignment at CM002459.1:1036062..1037514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2718 ID=rna2718|Name=rna2718|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp|location=Sequence derived from alignment at CM002459.1:1036062..1037514- (Nannochloropsis gaditana)
GCCACAGCATGGTCATGCTCGGGATGACGTTGTCTTCGTGAGGATAAGGG
GAAGGAATAAGGACGGTGAATATCACACGCAGGGCAGCTACTTGATGCGC
AGACTGCCTCCTAGAAGAAACCTCTGGATGCATTGATATCCGCCCCGCTT
ACACTCCAGCACGGCCTTAACTCGGCCCTTGATACCGACAGGTGAGGCAC
GGATATCAGACGGTGCGCATGGATGAGGCGGGAGCCAACGAGGCAGGGGG
TCGTGTTGGTGGCGCCGGCGTGGAGGAGGTCCGGGAACAAGACAGATATT
TGCCCATTGCCAACATCAGTCGGATAATGAAGAAGTCTTTGGTAAGTGTC
GTGACGCATCCTAATAGTGCGCTCCTTCTAGATGTCCCAACATCTGTCGC
CGATAGACCTTGTTTTGTCCCACAAGTCTCCTGTTCCCATCCTCTTCTAC
CATGTTCTCTTTCCTCACTCATGTGCTCCCTCTCTCGCCACTAATCCGGG
CAGCCGGCGAATGCCAAAATAGCCAAGGACGCCAAAGAAACCGTCCAAGA
ATGTGTTTCAGAGTTCATTTCTTTCATCACCTCCGAAGCCAGCGACAAAT
GCCAACAGGAGAAGCGAAAGACGATCAACGGGGACGATCTCCTCTGGGCC
ATGAGCACCCTGGGCTTCGACAAATACGTCGAGCCTCTGAAACATTATTT
GGTCAAGTACCGTGAGTCAGTGAAGGGGGGTGAGAAGGCGGACGGAGGGA
AGAAAGGGAAGTCTGAGGGCACCCAAGTGACAGGAAGTAGCGCGGCGGGT
CCTGTCACGGCGACCGCGCTAGCTGAGCCTCAGGGTGACAGTCGGGTGGA
ATCGACCGAAAGCAGTAGTCTCCCCGAGCAGCAACATCACAGTTATGCAG
CCCGTGCTGTGTCAAGGCAGCCGCCTTCCTGAGTCCGGCGGTGTGTGCTT
GTCAGTTTCATGGGGGGGGGATCGAAGCGCTGTGCCCCAGTGAGAGAGAG
GGAAAAAAAGAGAGAGGAAGAGAGGAAAGAGATATGGAGATGGATAGAGG
AAGGGACAGTGGGGGAAAAGGAAAGGGTGCATGCGCTCACACAATGGGAG
GCACGTGGCAAAACCTGTGTAATGTCATCTGCGTTACCCCGGATTATAAA
TATGGCTCGTGCGTTGGGTAGACAAAGTAAGGCTTCGTCGGGCCCACGAT
TTGTGGAAAGACTGTTAATACGTGTCGAGGATGAGATCATTCATGGTGAA
TGCGACCGCCTGATGGGCTGTGTCGTATCGTTCATGCAGGGTGGCATTCA
GGAACGGAGCATCTTATCGTTGAGGGGAACATCGGCAAGAGTAAAAAGAT
AGGTCGACGTCATGACGGGAACGGTTTGACCAGTGTCACAGCATCACGCG
ATTATTTTCTCGCAGATAAAAAAATCACTCTCAAGAATTTGTATGTCCTT
TCC
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Coding sequence (CDS) from alignment at CM002459.1:1036062..1037514-

>rna2718 ID=rna2718|Name=rna2718|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002459.1:1036062..1037514- (Nannochloropsis gaditana)
CCGGCGAATGCCAAAATAGCCAAGGACGCCAAAGAAACCGTCCAAGAATG
TGTTTCAGAGTTCATTTCTTTCATCACCTCCGAAGCCAGCGACAAATGCC
AACAGGAGAAGCGAAAGACGATCAACGGGGACGATCTCCTCTGGGCCATG
AGCACCCTGGGCTTCGACAAATACGTCGAGCCTCTGAAACATTATTTGGT
CAAGTACCGTGAGTCAGTGAAGGGGGGTGAGAAGGCGGACGGAGGGAAGA
AAGGGAAGTCTGAGGGCACCCAAGTGACAGGAAGTAGCGCGGCGGGTCCT
GTCACGGCGACCGCGCTAGCTGAGCCTCAGGGTGACAGTCGGGTGGAATC
GACCGAAAGCAGTAGTCTCCCCGAGCAGCAACATCACAGTTATGCAGCCC
GTGCTGTGTCAAGGCAGCCGCCTTCCTGAATGGATGAGGCGGGAGCCAAC
GAGGCAGGGGGTCGTGTTGGTGGCGCCGGCGTGGAGGAGGTCCGGGAACA
AGACAGATATTTGCCCATTGCCAACATCAGTCGGATAATGAAGAAGTCTT
TGCCGGCGAATGCCAAAATAGCCAAGGACGCCAAAGAAACCGTCCAAGAA
TGTGTTTCAGAGTTCATTTCTTTCATCACCTCCGAAGCCAGCGACAAATG
CCAACAGGAGAAGCGAAAGACGATCAACGGGGACGATCTCCTCTGGGCCA
TGAGCACCCTGGGCTTCGACAAATACGTCGAGCCTCTGAAACATTATTTG
GTCAAGTACCGTGAGTCAGTGAAGGGGGGTGAGAAGGCGGACGGAGGGAA
GAAAGGGAAGTCTGAGGGCACCCAAGTGACAGGAAGTAGCGCGGCGGGTC
CTGTCACGGCGACCGCGCTAGCTGAGCCTCAGGGTGACAGTCGGGTGGAA
TCGACCGAAAGCAGTAGTCTCCCCGAGCAGCAACATCACAGTTATGCAGC
CCGTGCTGTGTCAAGGCAGCCGCCTTCCTGAATGGATGAGGCGGGAGCCA
ACGAGGCAGGGGGTCGTGTTGGTGGCGCCGGCGTGGAGGAGGTCCGGGAA
CAAGACAGATATTTGCCCATTGCCAACATCAGTCGGATAATGAAGAAGTC
TTTG
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Synonyms
Publications