EWM28013.1, cds2689 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|585110354|gb|EWM28013.1| (mg-protoporphyrin ix methyl transferase [Nannochloropsis gaditana]) HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query: 1 MRTTLVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAVYARHRKWKDGDLSRGIVIRGLYVLQGGCGLLACDGVMEEEESRPQNPKRST 325
MRTTLVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAVYARHRKWKDGDLSRGIVIRGLYVLQGGCGLLACDGVMEEEESRPQNPKRST
Sbjct: 1 MRTTLVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAVYARHRKWKDGDLSRGIVIRGLYVLQGGCGLLACDGVMEEEESRPQNPKRST 325
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|298708289|emb|CBJ48352.1| (Magnesium-protoporphyrin IX methyltransferase, putative chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 328.561 bits (841), Expect = 2.990e-109 Identity = 152/224 (67.86%), Postives = 179/224 (79.91%), Query Frame = 0
Query: 51 DKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAV 274
DK EV EYFN GF+RWN+IYSE VN VQ DIR GH QT+DK+L W++ DG CDAGCGVGSL+IP+A LGAKVA+SDIS++M E +RA+A LG+ R SF+TSDLE L G YDTV C+DVMIHYPT+KM MVSKL S++K R+I+SFAP TWYY +LKKIGELFPGPSKTTRAYLHTEE VRKAL A GF ++RTEMT+TNFY+SR+LEAV
Sbjct: 68 DKEEVTEYFNNNGFERWNKIYSESDEVNDVQRDIRTGHGQTIDKVLRWVEEDGSAKSVFCDAGCGVGSLSIPLARLGAKVASSDISAAMTGEAEERAKAELGRDAKR--ISFTTSDLENLTGSYDTVLCIDVMIHYPTEKMSDMVSKLCSMSKNRVILSFAPDTWYYSLLKKIGELFPGPSKTTRAYLHTEEAVRKALAAEGFAIKRTEMTSTNFYYSRMLEAV 289
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|1210520389|dbj|GAX20820.1| (magnesium-protoporphyrin O-methyltransferase [Fistulifera solaris]) HSP 1 Score: 327.02 bits (837), Expect = 5.192e-109 Identity = 163/262 (62.21%), Postives = 194/262 (74.05%), Query Frame = 0
Query: 14 LSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADG-VKGESICDAGCGVGSLAIPMAELGAK-VAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEA 273
S ++ FVP +++ T + + T+ DDKTEVREYFNTEGF RWN+IYS+ VNKVQ DIR GH QT+ KIL WLQADG V+ ++ CD GCGVGSLAIP+A++GAK V+ASDIS SMANE ++RA+A LG A F TSDLE++ G+YDTVTCVDV IHYP +KM M+ L SL+K R++ISFAPKTWYY LKKIGELFPGPSKTTRAYLH E +R AL GF V+R EMTATNFYFSRLLEA
Sbjct: 7 FSLFYSVAAFVPTQRSAFGVTHLASTTQ--------DDKTEVREYFNTEGFNRWNKIYSDSDDVNKVQLDIRNGHDQTIQKILNWLQADGTVQQQTFCDCGCGVGSLAIPLAQMGAKKVSASDISDSMANEAKRRAQA-LGIQNAE----FYTSDLESVTGQYDTVTCVDVAIHYPDEKMVEMIEHLCSLSKDRVMISFAPKTWYYVFLKKIGELFPGPSKTTRAYLHEESIIRDALTKCGFAVQREEMTATNFYFSRLLEA 255
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|551555119|ref|XP_005764756.1| (protoporphyrin IX methyltransferase [Emiliania huxleyi CCMP1516] >gi|485614545|gb|EOD12327.1| protoporphyrin IX methyltransferase [Emiliania huxleyi CCMP1516]) HSP 1 Score: 326.635 bits (836), Expect = 6.646e-109 Identity = 166/273 (60.81%), Postives = 197/273 (72.16%), Query Frame = 0
Query: 5 LVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGES---ICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAV 274
++ +AA++ L P P R +AA++ + V DDK+EV EYFN EGF RWNRIYSEDG VN VQ DIR GH QTVDKIL W+ +DG + S CDAGCGVGSLAIP+A+ GA V ASDI+ +MA+E +RA A LG + R SFSTSDLE+L G+YDTV+C+DVMIHYP +KM GMV LG +AK+R+I+SFAP TWYY LK+ GELFPGPSKTTRAYLHTEE V KAL AGF RTEMT TNFYFSRL+EAV
Sbjct: 1 MLQLAASSILGLTVPHAPHAP--------PRCLAASR-AASPVCVDDKSEVEEYFNNEGFNRWNRIYSEDGEVNAVQLDIRTGHGQTVDKILKWVDSDGRESLSDGTWCDAGCGVGSLAIPLAQRGATVVASDIAGAMASEAERRA-ADLGLSE---RASFSTSDLESLSGEYDTVSCIDVMIHYPPEKMAGMVGHLGGIAKERLILSFAPDTWYYRALKRFGELFPGPSKTTRAYLHTEEAVLKALSEAGFAPSRTEMTGTNFYFSRLIEAV 260
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|551622755|ref|XP_005791706.1| (protoporphyrin IX methyltransferase [Emiliania huxleyi CCMP1516] >gi|485645664|gb|EOD39277.1| protoporphyrin IX methyltransferase [Emiliania huxleyi CCMP1516]) HSP 1 Score: 325.865 bits (834), Expect = 1.592e-108 Identity = 166/273 (60.81%), Postives = 196/273 (71.79%), Query Frame = 0
Query: 5 LVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGES---ICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAV 274
++ +AA+ L P P R +AA++ + V DDK+EV EYFN EGF RWNRIYSEDG VN VQ DIR GH QTVDKIL W+ +DG + S CDAGCGVGSLAIP+A+ GA V ASDI+ +MA+E +RA A LG + R SFSTSDLE+L G+YDTV+C+DVMIHYP +KM GMV LG +AK+R+I+SFAP TWYY LK+ GELFPGPSKTTRAYLHTEE V KAL AGF RTEMT TNFYFSRL+EAV
Sbjct: 1 MLQLAASTILGLTVPHAPHAPPR--------CLAASR-AASPVCVDDKSEVEEYFNNEGFNRWNRIYSEDGEVNAVQLDIRTGHGQTVDKILKWVDSDGRESLSDGTWCDAGCGVGSLAIPLAQRGATVVASDIAGAMASEAERRA-ADLGLSE---RASFSTSDLESLSGEYDTVSCIDVMIHYPPEKMAGMVGHLGGIAKERLILSFAPDTWYYRALKRFGELFPGPSKTTRAYLHTEEAVLKALSEAGFAPSRTEMTGTNFYFSRLIEAV 260
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|1210529660|dbj|GAX11754.1| (magnesium-protoporphyrin O-methyltransferase [Fistulifera solaris]) HSP 1 Score: 327.02 bits (837), Expect = 2.421e-108 Identity = 162/262 (61.83%), Postives = 195/262 (74.43%), Query Frame = 0
Query: 14 LSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADG-VKGESICDAGCGVGSLAIPMAELGAK-VAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEA 273
S ++ FVP++++ T + + T+ DDKTEVREYFNTEGF RWN+IYS+ VNKVQ DIR GH QT+ KIL WLQADG V+ ++ CD GCGVGSLAIP+A++GAK V+ASDIS +MANE ++RA+A LG A F TSDLE++ G+YDTVTCVDV IHYP +KM M+ L SL+K R++ISFAPKTWYY LKKIGELFPGPSKTTRAYLH E +R AL GF V+R EMTATNFYFSRLLEA
Sbjct: 57 FSLFYSVAAFVPSQRSAFGVTHLASTTQ--------DDKTEVREYFNTEGFNRWNKIYSDSDDVNKVQLDIRNGHDQTIQKILNWLQADGTVQQQTFCDCGCGVGSLAIPLAQMGAKKVSASDISDAMANEAKRRAQA-LGIRNAE----FYTSDLESVTGQYDTVTCVDVAIHYPDEKMVEMIEHLCSLSKDRVMISFAPKTWYYVFLKKIGELFPGPSKTTRAYLHEESIIRDALTKCGFAVQREEMTATNFYFSRLLEA 305
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|219115329|ref|XP_002178460.1| (magnesium-protoporphyrin IX methyltransferase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410195|gb|EEC50125.1| magnesium-protoporphyrin IX methyltransferase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 318.931 bits (816), Expect = 7.234e-106 Identity = 164/263 (62.36%), Postives = 190/263 (72.24%), Query Frame = 0
Query: 12 ATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADG-VKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEA 273
A LS A AFVP V + + S A DDKTEVREYFNTEGF RWN+IYS+ VN VQ DIR GH QT+ KIL W+ ADG + G+S+CD GCGVGSLAIP+A++GAKV+ASDIS +M+ E +RA + KA F TSDLE++ GKY TVTCVDV IHYP DK + MV+ L SLA+ R++ISFAPKTWYY LKKIGELFPGPSKTTRAYLH E VR+AL+ AGF V R EMTATNFYFSRLLEA
Sbjct: 10 ALLSSASAFVPSVHSVSSAGSALFSSA-----------DDKTEVREYFNTEGFSRWNKIYSDTDDVNSVQMDIRNGHDQTIQKILKWIAADGDIDGKSVCDCGCGVGSLAIPLAQMGAKVSASDISDAMSTEAARRAGELGVKA------DFYTSDLESVSGKYHTVTCVDVAIHYPDDKFKEMVTHLCSLAEDRVLISFAPKTWYYVFLKKIGELFPGPSKTTRAYLHEESIVREALQQAGFEVARDEMTATNFYFSRLLEA 255
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|922865272|gb|KOO32364.1| (mg-protoporphyrin ix methyltransferase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 318.161 bits (814), Expect = 2.207e-105 Identity = 154/230 (66.96%), Postives = 174/230 (75.65%), Query Frame = 0
Query: 46 SVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGV--KGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEA 273
+V DDK EV EYFN EGF RW+RIYS+DG VN VQ DIR GH QTVDK+LGW+ ADG +GE+ DAGCGVGSL++P+A+ GAKV ASDIS++M E +RA KA R SFSTSDLE ++GKYDTVTC+DVMIHYP DKM MV L A KR+IISFAP TWYY LK GELFPGPSKTTRAYLH+EE V AL AAGF + RTEMT T FYFSRLLEA
Sbjct: 38 AVAVDDKAEVEEYFNNEGFNRWSRIYSDDGEVNTVQLDIREGHAQTVDKVLGWVDADGSAKRGETFADAGCGVGSLSLPLAQRGAKVTASDISAAMVEEAAKRAT----KAGLSDRASFSTSDLENIEGKYDTVTCIDVMIHYPQDKMAQMVQGLAQKADKRLIISFAPDTWYYRALKSFGELFPGPSKTTRAYLHSEEAVVDALNAAGFELARTEMTGTKFYFSRLLEA 263
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|1072234056|gb|OEU18786.1| (Mg-protoporphyrin IX methyltransferase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 315.849 bits (808), Expect = 1.445e-104 Identity = 153/225 (68.00%), Postives = 174/225 (77.33%), Query Frame = 0
Query: 50 DDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADG-VKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEA 273
DDKTEVREYFNTEGF RWN+IYSE VN VQ DIR GH QT+ KIL W+ DG + G+S+CD GCGVGSLAIP+A++GAK++ASDIS SMA+E +RAE LG A+ F TSDLE++ G YDTVTCVDV IHYP+D+M MV L SL+ R+I SFAPKTWYY LKK GELFPGPSKTTRAYLH E+ VR AL AGF V R EMT TNFYFSRLLEA
Sbjct: 46 DDKTEVREYFNTEGFNRWNKIYSESDEVNTVQLDIRTGHGQTIQKILNWISDDGNISGKSVCDCGCGVGSLAIPLAQMGAKISASDISDSMADEASRRAEE-LGIKDAK----FYTSDLESVTGTYDTVTCVDVAIHYPSDQMAEMVGHLCSLSSDRVIFSFAPKTWYYSALKKFGELFPGPSKTTRAYLHEEQVVRDALTKAGFQVAREEMTGTNFYFSRLLEA 265
BLAST of EWM28013.1 vs. NCBI_GenBank
Match: gi|223995835|ref|XP_002287591.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976707|gb|EED95034.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 314.309 bits (804), Expect = 6.450e-104 Identity = 164/274 (59.85%), Postives = 197/274 (71.90%), Query Frame = 0
Query: 3 TTLVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGT--DDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADG-VKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEA 273
TT++A+ A + AF P S TR+ AA TS+ + DDKTEVREYFN EGF RWN+IYSE VN VQ DIR GH QT+ KIL W++ DG +KG+++CD GCGVGSLAIP+A++GA+++ASDIS +MA E +G A+ F TSDLE++ GKY+TVTCVDV IHYPT+KM MV L SLA +R++ISFAPKTWYYD+LKK GELFPGPSKTTRAYLH E VR+ALK AGF V R EMT TNFYFSRLLEA
Sbjct: 6 TTVLALVATIAVVPTSAFAPV-------SSNTRV-AAPSSTTTSLASAVDDKTEVREYFNNEGFNRWNKIYSESDEVNSVQLDIRNGHDQTIQKILNWIKDDGDIKGKTVCDCGCGVGSLAIPLAQMGAEISASDISDAMATE-AAARAKAMGIENAK----FYTSDLESVTGKYNTVTCVDVAIHYPTEKMAEMVGHLCSLADERVLISFAPKTWYYDLLKKFGELFPGPSKTTRAYLHEESVVREALKKAGFEVAREEMTGTNFYFSRLLEA 266 The following BLAST results are available for this feature:
BLAST of EWM28013.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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